BAC Information

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BAC

Clone NameB6Ng01-305K12
Chromosome1 (Build37)
Map Location 60,601,963 - 60,602,979
singlet/doubletsinglet
Overlap geneRaph1
Upstream geneGm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, LOC100043027
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K12.bB6Ng01-305K12.g
ACCGA098894GA098895
length1,0211,237
definitionB6Ng01-305K12.b B6Ng01-305K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtccagccagtattacacagtgatacctaaccctaaaaataa
gttttaaaatttgctgagtattcaaataatatatgctaatcatctccttt
ctatttaaagacttcattttttaaaacttacgtgtctctctcaatttcca
ggtctcctaacattttaaaacaaattcttgttaaatctgaaatttcaaac
aagtaagtaaatcacctatttgtatgtcctgaatctgggaatggtcatta
tagggcaaaagatcagctaaagaaaacgagtctgttaagaatcctctagt
ttgagccacctagaactaaacaaggggtctgaaaaccacaagcgatttct
cttctaatgctaccattagctacacagaactctgattaagcactggcatg
gttttcttaatcttcagagaaggggaaagtctgagacagataaactgata
ccagaagaatcccctccacccactttaagtgttcttctgtaaaggtttat
tatttaaacatcaacttcactctaccttcctatcaatttgtcactctacc
ctccccaatccttgtgtgtacatggaagaagggattacagtattctaatc
tgaaaagaaagaaaaaaaggtttattatttaaatattaacttcactctac
cttcctattatttgccagtcttccctgatctttgttccagaagaggtatt
gaaagaaagtaaatgtgggacctgtgattcatgtaatttatgtcaaatag
cccaaagagttgtttgtgagctttgaaacctggggctgagaacatagcag
aacaggccaggacattcctgaggctgctttgccataaagataaaagagag
ataaagagaatgacatgcaggactggcctggtgcctccctatctcccgcc
ctttctgacctaagttaaattaacaggctgctgatgtttaaaatgaacca
atcatgtgaaacgtgcaaattccttcccccaagcccagcccttttctata
aaaaaaaaaacccctaacttc
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagca
gtgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccagtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacggctattagggcctggaaggcgctctctcgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtattttttggag
agttcagagcaagctgcgcctctgatagaacagctaatctatgagcaagc
cacaaaggagtgccgagcggccaatagccccaagaaagaacaaaaggctt
actagactggctcagggtctgtcgagagcttggggacctctcaaccaatg
cagcttagtggccgccatccttcaatctcagaaccgctccatgagcagaa
attgatcagaggacattgtttttaattgccgaaagccctgggcattttta
aagaaagattgcaaagctccaattaaacagaaggacctctcaccttcttg
cttcaaggtggtggccaagttatctataaagacctgaaccagggttccgc
ccttgtgaaagtataatatggccaagtgacctttccccacatggtaaatg
gtcaatacccatactcgatagagtgtgtccaagtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60601963_60602979
seq2: B6Ng01-305K12.b_44_1064

seq1  GAATTCCAGTCCAGCCAGTATTACACAGTGATACCTAACCCTAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCAGCCAGTATTACACAGTGATACCTAACCCTAAAAATAA  50

seq1  GTTTTAAAATTTGCTGAGTATTCAAATAATATATGCTAATCATCTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATTTGCTGAGTATTCAAATAATATATGCTAATCATCTCCTTT  100

seq1  CTATTTAAAGACTTCATTTTTTAAAACTTACGTGTCTCTCTCAATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAAGACTTCATTTTTTAAAACTTACGTGTCTCTCTCAATTTCCA  150

seq1  GGTCTCCTAACATTTTAAAACAAATTCTTGTTAAATCTGAAATTTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTAACATTTTAAAACAAATTCTTGTTAAATCTGAAATTTCAAAC  200

seq1  AAGTAAGTAAATCACCTATTTGTATGTCCTGAATCTGGGAATGGTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTAAATCACCTATTTGTATGTCCTGAATCTGGGAATGGTCATTA  250

seq1  TAGGGCAAAAGATCAGCTAAAGAAAACGAGTCTGTTAAGAATCCTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAAAGATCAGCTAAAGAAAACGAGTCTGTTAAGAATCCTCTAGT  300

seq1  TTGAGCCACCTAGAACTAAACAAGGGGTCTGAAAACCACAAGCGATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCACCTAGAACTAAACAAGGGGTCTGAAAACCACAAGCGATTTCT  350

seq1  CTTCTAATGCTACCATTAGCTACACAGAACTCTGATTAAGCACTGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATGCTACCATTAGCTACACAGAACTCTGATTAAGCACTGGCATG  400

seq1  GTTTTCTTAATCTTCAGAGAAGGGGAAAGTCTGAGACAGATAAACTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTAATCTTCAGAGAAGGGGAAAGTCTGAGACAGATAAACTGATA  450

seq1  CCAGAAGAATCCCCTCCACCCACTTTAAGTGTTCTTCTGTAAAGGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAATCCCCTCCACCCACTTTAAGTGTTCTTCTGTAAAGGTTTAT  500

seq1  TATTTAAACATCAACTTCACTCTACCTTCCTATCAATTTGTCACTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACATCAACTTCACTCTACCTTCCTATCAATTTGTCACTCTACC  550

seq1  CTCCCCAATCCTTGTGTGTACATGGAAGAAGGGATTACAGTATTCTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAATCCTTGTGTGTACATGGAAGAAGGGATTACAGTATTCTAATC  600

seq1  TGAAAAGAAAGAAAAAAAGGTTTATTATTTAAATATTAACTTCACTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAAGAAAAAAAGGTTTATTATTTAAATATTAACTTCACTCTAC  650

seq1  CTTCCTATTATTTGCCAGTCTTCCCTGATCTTTGTTCCAGAAGAGGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATTATTTGCCAGTCTTCCCTGATCTTTGTTCCAGAAGAGGTATT  700

seq1  GAAAGAAAGTAAATGTGGGACCTGTGATTCATGTAATTTATGTCAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGTAAATGTGGGACCTGTGATTCATGTAATTTATGTCAAATAG  750

seq1  CCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAG  800

seq1  AACAGGCCAGGACATTCCTGAGGCTGCTTTGCCATAAAGAT-AAAGAGAG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACAGGCCAGGACATTCCTGAGGCTGCTTTGCCATAAAGATAAAAGAGAG  850

seq1  ATAAAGAGAATGACATGCAGGACTGGCCTGGTGCCTCCCTATCTCCCGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGAATGACATGCAGGACTGGCCTGGTGCCTCCCTATCTCCCGCC  900

seq1  C-TTCTGACCTAAGTTAAATTAACAGGCTGCTGATGTTT-AAATGAACCA  947
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCTGACCTAAGTTAAATTAACAGGCTGCTGATGTTTAAAATGAACCA  950

seq1  ATCATGTGAAACCGTGC-AATTCC-TCCCCCAGCCCCAGCCCCTTTTCTA  995
      ||||||||||| ||||| |||||| |||||||  ||||| ||||||||||
seq2  ATCATGTGAAA-CGTGCAAATTCCTTCCCCCAAGCCCAG-CCCTTTTCTA  998

seq1  T-AAAAAAAAAACCCCTAACTTC  1017
      | |||||||||||||||||||||
seq2  TAAAAAAAAAAACCCCTAACTTC  1021