BAC Information

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BAC

Clone NameB6Ng01-305P07
Chromosome1 (Build37)
Map Location 49,997,677 - 50,113,241
singlet/doubletdoublet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305P07.bB6Ng01-305P07.g
ACCGA099116GA099117
length1,1531,180
definitionB6Ng01-305P07.b B6Ng01-305P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,112,075 - 50,113,241)(49,997,677 - 49,998,867)
sequence
gaattcacccatgtaagtctcttgacctctacctgcctgctggagaaaca
caataccaaacacaacagtaagaatttaaatagaaaataaaatataatca
gtttgtccaggtctacacaagcagatattggcataaacaaaatacagtaa
aataaaaacaaatgcttttaatcccagccctcaagaagcagaggcaggag
gatctttccaacttccatggtagcctggtacacacagccaactctagact
gtccagggctggctagtaagtccagcacttcagaaattaatgacgctatc
tgtatattttgccagaagaagataaaacatgttaaaaaacataattagaa
taaaaaccaacacacaatttcaaaaactggattatttaatatcaaatgta
tttagagttgagtgttatgtttaagtctaggtaaagaactatttcacatc
tctgaagtcgtacaactctcttaggagacttttggctccttgagactcac
tagttggtgtggttcattcacctctctgtcaagccttctctctcagggct
gacagcagagcagaaccctttgctctctttgtagctcacctcagttctct
caagtgtgctgtccaagcctctccaatctccttttatactcctaaggacc
gccccctccctagataagcctcctatctctgataattgaatcattttttc
acaccacaaacacttacaatccttaaagagacataatactgaagaaagca
atgtttacaactgtaacatatgccagaagaaaagactgtggttaattcag
tgtaatacccaataatcagactaaaagttttattttaaaatgacttcagg
ttatccctcttaacatgattaaatcagttggatttgtctttttgtttgct
tgtttgttttgtttttattgggtttttttttttttttgagatatctgtcc
ttgaaatctctgtagagctgagattgcctccaattgagagatctgcctac
ctctgcttcctaactgcttagatgaaaggtgttggcacttaatgactcag
taaaccatttctaacttctctcagtagatcataaaacaaataaagaaaac
aaaatcagcaatcagccattatggtcacatgacaggattctattgactgt
aac

gaattccagggggaggagggccctgaacatttcagtgtcatatctcttca
atgttacagttcttcagtgatacagatcttatagaaatcagctctcttag
accttaaccaacaaaatagcttgtggttatatacttttttcaggatgaaa
caagatatatatatatgaacctcagagagtgagaaggggttcttcttcag
gtgaagtttcaaggacttcgttaagtttaaatttctggggtgatctcatt
tgcatggagagggattcgagaggtcaggtagacaagaatccctcctaaga
aaaagtagtcctccactgtgcactgaggtcatgaaagctatccatgcccg
atagactacaaccttagtagctacaggtagatatgccatagatgtggaca
aagttggttttggaagaagaatgtaagcatatgagatgaggactgttgca
aaacttaaaatgctcccccaaaaaggtgtaccaaagttgcctatgtatca
acacatatgtcagactgacatagttgcagataatcatatataaaatatgc
tttacataatgctagagtaaataaaatatacccaataaaaataatacata
agttaaaatgctttaagttttcttgttgatgagttcagaacttgaaaaac
acctgaaaaatgttcaaagatatttaacatggcacagcaattgtgtaaaa
atgttttttaaactatatttttcattgatatgagttgcaaccaatacaac
caaataaatgaattttaaatacctttttgagatgcatacagtcagatacc
aagcactatattgtgaatgatttcatttttggtcattcctggaagaaaca
aaacaacccagctacagcatcaagagaaaaatatttaccctaagacttaa
gtatgtattgagaatacatggcaaatgaaattaatagactgagtggtgaa
gcttttctattgtgcagtgagcagtgtaaaataaaggcttatatatttgc
ctatggtatttatcatattagcccaaatttctattcatcaaccttacatt
taccagaaaagttagcaaaataattcatttcaccgatattacgagcatct
taaccataacttaaactgctgaaacaactggtatcaacctagtaaatgca
aaaaaaagagtaccttatactagtattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50112075_50113241
seq2: B6Ng01-305P07.b_42_1194 (reverse)

seq1  GTTACAGTC-ATAGAATCCTGTCAATTGTGACCATTTATTGGCTTTGATT  49
      ||||||||| ||||||||||||||  ||||||||  || ||||  |||  
seq2  GTTACAGTCAATAGAATCCTGTCA--TGTGACCA--TAATGGC--TGA--  42

seq1  TTTGCTTGATTTTTGTTTTCTTTATTTTTGTTTTTATGATCTACTGAGAG  99
       |||| ||| |||||||||||||||||    |||||||||||||||||||
seq2  -TTGC-TGA-TTTTGTTTTCTTTATTT---GTTTTATGATCTACTGAGAG  86

seq1  AAGTTTAGAAATGGTTTACTGAGTCATTAGGTGCCAACACCTTTCATCTA  149
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAG-TTAGAAATGGTTTACTGAGTCATTAAGTGCCAACACCTTTCATCTA  135

seq1  AGCAGTTAGGAAGCAGAGGTAGGCAGATCTCTCAATTGGAGGCAATCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAGGAAGCAGAGGTAGGCAGATCTCTCAATTGGAGGCAATCTCA  185

seq1  GCTCTACAGAGATTTCAAGGACAGATATCTCAAAAAAAAAAAAAACCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  GCTCTACAGAGATTTCAAGGACAGATATCTCAAAAAAAAAAAAAAACCCA  235

seq1  ATAAAAACAAAACAAACAAGCAAACAAAAAGACAAATCCAACTGATTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAAAACAAACAAGCAAACAAAAAGACAAATCCAACTGATTTAA  285

seq1  TCATGTTAAGAGGGATAACCTGAAGTCATTTTAAAATAAAACTTTTAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAAGAGGGATAACCTGAAGTCATTTTAAAATAAAACTTTTAGTC  335

seq1  TGATTATTGGGTATTACACTGAATTAACCACAGTCTTTTCTTCTGGCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTGGGTATTACACTGAATTAACCACAGTCTTTTCTTCTGGCATA  385

seq1  TGTTACAGTTGTAAACATTGCTTTCTTCAGTATTATGTCTCTTTAAGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGTTGTAAACATTGCTTTCTTCAGTATTATGTCTCTTTAAGGAT  435

seq1  TGTAAGTGTTTGTGGTGTGAAAAAATGATTCAATTATCAGAGATAGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTGTTTGTGGTGTGAAAAAATGATTCAATTATCAGAGATAGGAGG  485

seq1  CTTATCTAGGGAGGGGGCGGTCCTTAGGAGTATAAAAGGAGATTGGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAGGGAGGGGGCGGTCCTTAGGAGTATAAAAGGAGATTGGAGAG  535

seq1  GCTTGGACAGCACACTTGAGAGAACTGAGGTGAGCTACAAAGAGAGCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACAGCACACTTGAGAGAACTGAGGTGAGCTACAAAGAGAGCAAA  585

seq1  GGGTTCTGCTCTGCTGTCAGCCCTGAGAGAGAAGGCTTGACAGAGAGGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGCTCTGCTGTCAGCCCTGAGAGAGAAGGCTTGACAGAGAGGTG  635

seq1  AATGAACCACACCAACTAGTGAGTCTCAAGGAGCCAAAAGTCTCCTAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCACACCAACTAGTGAGTCTCAAGGAGCCAAAAGTCTCCTAAGA  685

seq1  GAGTTGTACGACTTCAGAGATGTGAAATAGTTCTTTACCTAGACTTAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTACGACTTCAGAGATGTGAAATAGTTCTTTACCTAGACTTAAAC  735

seq1  ATAACACTCAACTCTAAATACATTTGATATTAAATAATCCAGTTTTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTCAACTCTAAATACATTTGATATTAAATAATCCAGTTTTTGAA  785

seq1  ATTGTGTGTTGGTTTTTATTCTAATTATGTTTTTTAACATGTTTTATCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGTTGGTTTTTATTCTAATTATGTTTTTTAACATGTTTTATCTT  835

seq1  CTTCTGGCAAAATATACAGATAGCGTCATTAATTTCTGAAGTGCTGGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCAAAATATACAGATAGCGTCATTAATTTCTGAAGTGCTGGACT  885

seq1  TACTAGCCAGCCCTGGACAGTCTAGAGTTGGCTGTGTGTACCAGGCTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCCAGCCCTGGACAGTCTAGAGTTGGCTGTGTGTACCAGGCTACC  935

seq1  ATGGAAGTTGGAAAGATCCTCCTGCCTCTGCTTCTTGAGGGCTGGGATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTTGGAAAGATCCTCCTGCCTCTGCTTCTTGAGGGCTGGGATTA  985

seq1  AAAGCATTTGTTTTTATTTTACTGTATTTTGTTTATGCCAATATCTGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGTTTTTATTTTACTGTATTTTGTTTATGCCAATATCTGCTT  1035

seq1  GTGTAGACCTGGACAAACTGATTATATTTTATTTTCTATTTAAATTCTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCTGGACAAACTGATTATATTTTATTTTCTATTTAAATTCTTA  1085

seq1  CTGTTGTGTTTGGTATTGTGTTTCTCCAGCAGGCAGGTAGAGGTCAAGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGTTTGGTATTGTGTTTCTCCAGCAGGCAGGTAGAGGTCAAGAG  1135

seq1  ACTTACATGGGTGAATTC  1167
      ||||||||||||||||||
seq2  ACTTACATGGGTGAATTC  1153


seq1: chr1_49997677_49998867
seq2: B6Ng01-305P07.g_70_1249

seq1  GAATTCCAGGGGGAGGAGGGCCCTGAACATTTCAGTGTCATATCTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGGAGGAGGGCCCTGAACATTTCAGTGTCATATCTCTTCA  50

seq1  ATGTTACAGTTCTTCAGTGATACAGATCTTATAGAAATCAGCTCTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAGTTCTTCAGTGATACAGATCTTATAGAAATCAGCTCTCTTAG  100

seq1  ACCTTAACCAACAAAATAGCTTGTGGTTATATACTTTTTTCAGGATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACCAACAAAATAGCTTGTGGTTATATACTTTTTTCAGGATGAAA  150

seq1  CAAGATATATATATATGAACCTCAGAGAGTGAGAAGGGGTTCTTCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATATATATATGAACCTCAGAGAGTGAGAAGGGGTTCTTCTTCAG  200

seq1  GTGAAGTTTCAAGGACTTCGTTAAGTTTAAATTTCTGGGGTGATCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTTCAAGGACTTCGTTAAGTTTAAATTTCTGGGGTGATCTCATT  250

seq1  TGCATGGAGAGGGATTCGAGAGGTCAGGTAGACAAGAATCCCTCCTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAGAGGGATTCGAGAGGTCAGGTAGACAAGAATCCCTCCTAAGA  300

seq1  AAAAGTAGTCCTCCACTGTGCACTGAGGTCATGAAAGCTATCCATGCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTCCTCCACTGTGCACTGAGGTCATGAAAGCTATCCATGCCCG  350

seq1  ATAGACTACAACCTTAGTAGCTACAGGTAGATATGCCATAGATGTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTACAACCTTAGTAGCTACAGGTAGATATGCCATAGATGTGGACA  400

seq1  AAGTTGGTTTTGGAAGAAGAATGTAAGCATATGAGATGAGGACTGTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTTTTGGAAGAAGAATGTAAGCATATGAGATGAGGACTGTTGCA  450

seq1  AAACTTAAAATGCTCCCCCAAAAAGGTGTACCAAAGTTGCCTATGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAAATGCTCCCCCAAAAAGGTGTACCAAAGTTGCCTATGTATCA  500

seq1  ACACATATGTCAGACTGACATAGTTGCAGATAATCATATATAAAATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGTCAGACTGACATAGTTGCAGATAATCATATATAAAATATGC  550

seq1  TTTACATAATGCTAGAGTAAATAAAATATACCCAATAAAAATAATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAATGCTAGAGTAAATAAAATATACCCAATAAAAATAATACATA  600

seq1  AGTTAAAATGCTTTAAGTTTTCTTGTTGATGAGTTCAGAACTTGAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAATGCTTTAAGTTTTCTTGTTGATGAGTTCAGAACTTGAAAAAC  650

seq1  ACCTGAAAAATGTTCAAAGATATTTAACATGGCACAGCAATTGTGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAAATGTTCAAAGATATTTAACATGGCACAGCAATTGTGTAAAA  700

seq1  ATGTTTTTTAAACTATATTTTTCATTGATATGAGTTGCAACCAATACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTTAAACTATATTTTTCATTGATATGAGTTGCAACCAATACAAC  750

seq1  CAAATAAATGAATTTTAAATACCTTTTTGAGATGCATACAGTCAGATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATGAATTTTAAATACCTTTTTGAGATGCATACAGTCAGATACC  800

seq1  AAGCACTATATTGTGAATGATTTCATTTTTGGTCATTCCTGGAAGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTATATTGTGAATGATTTCATTTTTGGTCATTCCTGGAAGAAACA  850

seq1  AAACAACCCAGCTACAGCATCAAGAGAAAAATATTTACCCTAAGACTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCAGCTACAGCATCAAGAGAAAAATATTTACCCTAAGACTTAA  900

seq1  GTATGTATTGAGAATACATGGCAAATGAAATTAATAGACTGAGTGGTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTGAGAATACATGGCAAATGAAATTAATAGACTGAGTGGTGAA  950

seq1  GCTTTTCTA-TGTGCAGTGAGCAGTGTTAAATAAAGGCTTATATATTTG-  998
      ||||||||| ||||||||||||||||| ||||||||||||||||||||| 
seq2  GCTTTTCTATTGTGCAGTGAGCAGTGTAAAATAAAGGCTTATATATTTGC  1000

seq1  CTAT-GTATTTATCAATATTAG-CCAAATTTCTA-TCATCAA-CTTACAT  1044
      |||| ||||||||| ||||||| ||||||||||| ||||||| |||||||
seq2  CTATGGTATTTATC-ATATTAGCCCAAATTTCTATTCATCAACCTTACAT  1049

seq1  TTACCAGAAAAGGTAGGAAAAT-ATTCATTTCACCGAATATATAAACAAA  1093
      |||||||||||| ||| ||||| ||||||||||||||   ||  | |   
seq2  TTACCAGAAAAGTTAGCAAAATAATTCATTTCACCGATATTACGAGC---  1096

seq1  ACAATCTGTAACACATTAACATAAAACTGCTGAAACCAACTGAGTAATCA  1143
         |||| |||| || |||| | |||||||||||| |||||| || ||||
seq2  ---ATCT-TAAC-CA-TAAC-TTAAACTGCTGAAA-CAACTG-GT-ATCA  1136

seq1  AACTAGTAAAATGAAAAAAAAAAAGAGTAAC-TATACTAAGTAATTTTG  1191
      | ||||| |||||   ||||||||||||| | |||||| ||| ||||||
seq2  ACCTAGT-AAATG--CAAAAAAAAGAGTACCTTATACT-AGT-ATTTTG  1180


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