BAC Information

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BAC

Clone NameB6Ng01-306A18
Chromosome1 (Build37)
Map Location 81,159,744 - 81,320,414
singlet/doubletdoublet
Overlap gene9430031J16Rik
Upstream geneA830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream geneEG621020, LOC433328, EG665145, Irs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306A18.bB6Ng01-306A18.g
ACCGA099184GA099185
length1,1261,068
definitionB6Ng01-306A18.b B6Ng01-306A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,159,744 - 81,160,870)(81,319,341 - 81,320,414)
sequence
gaattcttaacatagaactttttaataaagtttaaaaaatgagttacata
caatttctacctgaagaatggtggtacatatagaatattatctttgggtt
aattatattagtaatatgtggcacattttgtgaaatacaagaaccagtta
ttaagaacttgctctttacagaactactgcatttcttcacctgtttatca
tcatgtatccacagtctaggtgtgcaggagtgaagtaaccctgtacactc
aataaaggaatggaagacataaggtttcttgctaatagagaaaccaacgt
agaagaataatttaataaaaaaatcagatatccagcagtggctgaatcag
catggagagattaaaaagagtggccgttgttttgacaaggtgactcagga
gcattcagtattggtgttctaggcaaagacatgtgggatactccacagtg
tgcctttactacattgcttgctctgggaagaaaacttttacgtgttaggc
tgtataggatatcattagctttgtactgtgcttaccccttgtatgattag
gattcctatgatagatagcttagtgtgcttgcagaaaacgggttccctct
ttcaaataataccagcttgttcagttcctactgtacttggaaaaagataa
tctccatcatttgtttggtcttagcctgtctaatccattaccactttctg
agtgcttagctgaaagtgattcagggacataggattgggtccctacctta
cttagcagtcatgtaggctggttgtattgaaagaaagtatcgtattgggt
gtggagttcttacattcttctgtagccctgagcccaccatttagtatatt
catgatccatcacattttatgttggacactatctgttaaccctgtctttg
ctgacttcttctttcttatggatttccaaattaacaccgtaagaagttaa
gcattccgcaatcttctcagaaattttgggaaattcagaaaagactaaca
catttatgaaaaatgcctttctgcattttacttgcaatgagcttgttttg
aaagatatagctctttcttgcacgtggtgtgccaagcctgtcctactaca
gttgacgaagcctatcttattccata
gaattccttattaaaaggtgatgactgcttctgacattaaggatgtaggc
tactttcaacctagctcttctaagctaatgttcgcaaaaagcttcttcag
tcatgacaagtagatactgtttgggtctgaaaataattgaattttttttt
atggagaaaatgaatctgccattctaggcccagttgggaactacctctca
aaggactcctaaggaccacgattatagtagcctctagaaagaagaaccaa
aaattctcctctctactaacctctagaattgtggcccagtatgaaatcaa
aagtgggatatatcacagtgaactctgggcattatttcaagagtgtgcct
gtgcttttgtcatttgttgatcctctagatcagagcttacattggtattc
ctgtttcctgtctcagtacctttcagctggatgcaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaggcggtgataggaggaacagaacat
agaaaacaataactatacaaattttgttcatgaactcagctaactgctta
gcaatgtcatggagctgtttgtcaatagtattgtatctacccaatctaca
ttactgtggagacatagacaatatgagagcacggactttcacactctctt
tgccttcagggagtcaaagagctcttgctcatataaaatcagagctctag
gcttggaagatggttcaacacatgagggagtttgcagatacaatgatctg
gggccaatctccagtacccatagaaataccgaggtgagactgatactgtt
tatataacctccacgctgtggcagggggagacaggaggattgctaagagt
tgggaattgctcagagcagcttattttccaggtttagtgaggagactgtg
tctcaggtggagaatgacaggcaagtaatctacttcagatactgactttg
tgtaatacacgcagcgtacaacatctatataacacatgtacatacactac
atgtgtgaacacacaacaacacacacctgagtcttacactttttggaccc
gaccagtctggttcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81159744_81160870
seq2: B6Ng01-306A18.b_45_1170

seq1  GAATTCTTAACATAGAACTTTTTAATAAAGTTTAAAAAATGAGTTACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACATAGAACTTTTTAATAAAGTTTAAAAAATGAGTTACATA  50

seq1  CAATTTCTACCTGAAGAATGGTGGTACATATAGAATATTATCTTTGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTACCTGAAGAATGGTGGTACATATAGAATATTATCTTTGGGTT  100

seq1  AATTATATTAGTAATATGTGGCACATTTTGTGAAATACAAGAACCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTAGTAATATGTGGCACATTTTGTGAAATACAAGAACCAGTTA  150

seq1  TTAAGAACTTGCTCTTTACAGAACTACTGCATTTCTTCACCTGTTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACTTGCTCTTTACAGAACTACTGCATTTCTTCACCTGTTTATCA  200

seq1  TCATGTATCCACAGTCTAGGTGTGCAGGAGTGAAGTAACCCTGTACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATCCACAGTCTAGGTGTGCAGGAGTGAAGTAACCCTGTACACTC  250

seq1  AATAAAGGAATGGAAGACATAAGGTTTCTTGCTAATAGAGAAACCAACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAATGGAAGACATAAGGTTTCTTGCTAATAGAGAAACCAACGT  300

seq1  AGAAGAATAATTTAATAAAAAAATCAGATATCCAGCAGTGGCTGAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATAATTTAATAAAAAAATCAGATATCCAGCAGTGGCTGAATCAG  350

seq1  CATGGAGAGATTAAAAAGAGTGGCCGTTGTTTTGACAAGGTGACTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAGATTAAAAAGAGTGGCCGTTGTTTTGACAAGGTGACTCAGGA  400

seq1  GCATTCAGTATTGGTGTTCTAGGCAAAGACATGTGGGATACTCCACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTATTGGTGTTCTAGGCAAAGACATGTGGGATACTCCACAGTG  450

seq1  TGCCTTTACTACATTGCTTGCTCTGGGAAGAAAACTTTTACGTGTTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTACTACATTGCTTGCTCTGGGAAGAAAACTTTTACGTGTTAGGC  500

seq1  TGTATAGGATATCATTAGCTTTGTACTGTGCTTACCCCTTGTATGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGGATATCATTAGCTTTGTACTGTGCTTACCCCTTGTATGATTAG  550

seq1  GATTCCTATGATAGATAGCTTAGTGTGCTTGCAGAAAACGGGTTCCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTATGATAGATAGCTTAGTGTGCTTGCAGAAAACGGGTTCCCTCT  600

seq1  TTCAAATAATACCAGCTTGTTCAGTTCCTACTGTACTTGGAAAAAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAATACCAGCTTGTTCAGTTCCTACTGTACTTGGAAAAAGATAA  650

seq1  TCTCCATCATTTGTTTGGTCTTAGCCTGTCTAATCCATTACCACTTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCATTTGTTTGGTCTTAGCCTGTCTAATCCATTACCACTTTCTG  700

seq1  AGTGCTTAGCTGAAGGTGATTCAGGGACATAGGATTGGGTCCCTACCTTA  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTGCTTAGCTGAAAGTGATTCAGGGACATAGGATTGGGTCCCTACCTTA  750

seq1  CTTAGCAGTCATGTAGGCTGGTTGTATTGAAAGAAAGTATCGTATTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGTCATGTAGGCTGGTTGTATTGAAAGAAAGTATCGTATTGGGT  800

seq1  GTGGAGTTCTTACATTCTTCTGTAGCCCTGAGCCCACCATTTAGTATTAT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGGAGTTCTTACATTCTTCTGTAGCCCTGAGCCCACCATTTAGTA-TAT  849

seq1  TCATGATCCATCACATTTTATGTTGGACACTATCTGTTAACCCTGTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCCATCACATTTTATGTTGGACACTATCTGTTAACCCTGTCTTT  899

seq1  GCTGACTTCTTCTTTCTTTATGGATTTCCAAA-TAACACCGTAAGAGGTT  949
      |||||||||||||||| ||||||||||||||| ||||||||||||| |||
seq2  GCTGACTTCTTCTTTC-TTATGGATTTCCAAATTAACACCGTAAGAAGTT  948

seq1  AAGCATT-CGCAATC-TCTCAGAAA-TTTGGAAAATTCAGGAAAAGAC-A  995
      ||||||| ||||||| ||||||||| ||||| ||||||| |||||||| |
seq2  AAGCATTCCGCAATCTTCTCAGAAATTTTGGGAAATTCA-GAAAAGACTA  997

seq1  ACACATTTATGAAAAATG-CTTTCTGCATTTTTAACCTGCAATGAGCTGT  1044
      |||||||||||||||||| |||||||||||||  || |||||||||||  
seq2  ACACATTTATGAAAAATGCCTTTCTGCATTTT--ACTTGCAATGAGCTTG  1045

seq1  TTTGGAAAGAATTAATAGCTCTTTC-TGCACGT-GTGTTGCAGAGCTGT-  1091
      ||| ||||||    ||||||||||| ||||||| ||||  ||   |||| 
seq2  TTTTGAAAGA---TATAGCTCTTTCTTGCACGTGGTGTGCCAAGCCTGTC  1092

seq1  CTACTACAGTTGACTGATAGCTATCTTATCCCCATA  1127
      |||||||||||||| ||   |||||||||  |||||
seq2  CTACTACAGTTGAC-GAAGCCTATCTTAT-TCCATA  1126

seq1: chr1_81319341_81320414
seq2: B6Ng01-306A18.g_62_1129 (reverse)

seq1  TGATGAAACAGGAGTGGTGCGGGTCCCAAAAAGTTGGAAAGAACTCAGGT  50
      ||||||| || || |||| ||||| |||||||||  | ||| ||||||||
seq2  TGATGAACCA-GACTGGT-CGGGT-CCAAAAAGT--GTAAG-ACTCAGGT  44

seq1  GTGTGT--GTGTGTGTTCACACATGTGGTGTATGTACATGTG-TATATAG  97
      ||||||   ||||||||||||||||| ||||||||||||||| |||||||
seq2  GTGTGTTGTTGTGTGTTCACACATGTAGTGTATGTACATGTGTTATATAG  94

seq1  ATG-TGTACGCCTGCGTGTA-TACACAAAGTCCAGTATCTGAAGTAGAAT  145
      ||| |||||| ||||||||| |||||||||| ||||||||||||||| ||
seq2  ATGTTGTACG-CTGCGTGTATTACACAAAGT-CAGTATCTGAAGTAG-AT  141

seq1  TACTTGCCTGTCATTCTCCACCTTGAGACACAGTCTCCTCACTAAACCTG  195
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACTTGCCTGTCATTCTCCACC-TGAGACACAGTCTCCTCACTAAACCTG  190

seq1  G-AAATAAGCTGCTCCTGAGCAATTCCCAACTCTTAGCAATCCTCCTGTC  244
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGCTGCT-CTGAGCAATTCCCAACTCTTAGCAATCCTCCTGTC  239

seq1  T-CCCCTGCCACAGCGTGGAGGTTATATAAACAGTATCAGTCTCACCTCG  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCCACAGCGTGGAGGTTATATAAACAGTATCAGTCTCACCTCG  289

seq1  GTATTTCTATGGGTACTGGAGATTGGCCCCAGATCATTGTATCTGCAAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTATGGGTACTGGAGATTGGCCCCAGATCATTGTATCTGCAAAC  339

seq1  TCCCTCATGTGTTGAACCATCTTCCAAGCCTAGAGCTCTGATTTTATATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATGTGTTGAACCATCTTCCAAGCCTAGAGCTCTGATTTTATATG  389

seq1  AGCAAGAGCTCTTTGACTCCCTGAAGGCAAAGAGAGTGTGAAAGTCCGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCTCTTTGACTCCCTGAAGGCAAAGAGAGTGTGAAAGTCCGTG  439

seq1  CTCTCATATTGTCTATGTCTCCACAGTAATGTAGATTGGGTAGATACAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATATTGTCTATGTCTCCACAGTAATGTAGATTGGGTAGATACAAT  489

seq1  ACTATTGACAAACAGCTCCATGACATTGCTAAGCAGTTAGCTGAGTTCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGACAAACAGCTCCATGACATTGCTAAGCAGTTAGCTGAGTTCAT  539

seq1  GAACAAAATTTGTATAGTTATTGTTTTCTATGTTCTGTTCCTCCTATCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATTTGTATAGTTATTGTTTTCTATGTTCTGTTCCTCCTATCAC  589

seq1  CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCA  643
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGC--CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCA  637

seq1  TCCAGCTGAAAGGTACTGAGACAGGAAACAGGAATACCAATGTAAGCTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGAAAGGTACTGAGACAGGAAACAGGAATACCAATGTAAGCTCT  687

seq1  GATCTAGAGGATCAACAAATGACAAAAGCACAGGCACACTCTTGAAATAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAGGATCAACAAATGACAAAAGCACAGGCACACTCTTGAAATAA  737

seq1  TGCCCAGAGTTCACTGTGATATATCCCACTTTTGATTTCATACTGGGCCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGTTCACTGTGATATATCCCACTTTTGATTTCATACTGGGCCA  787

seq1  CAATTCTAGAGGTTAGTAGAGAGGAGAATTTTTGGTTCTTCTTTCTAGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAGAGGTTAGTAGAGAGGAGAATTTTTGGTTCTTCTTTCTAGAG  837

seq1  GCTACTATAATCGTGGTCCTTAGGAGTCCTTTGAGAGGTAGTTCCCAACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATAATCGTGGTCCTTAGGAGTCCTTTGAGAGGTAGTTCCCAACT  887

seq1  GGGCCTAGAATGGCAGATTCATTTTCTCCATAAAAAAAAATTCAATTATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAGAATGGCAGATTCATTTTCTCCATAAAAAAAAATTCAATTATT  937

seq1  TTCAGACCCAAACAGTATCTACTTGTCATGACTGAAGAAGCTTTTTGCGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCCAAACAGTATCTACTTGTCATGACTGAAGAAGCTTTTTGCGA  987

seq1  ACATTAGCTTAGAAGAGCTAGGTTGAAAGTAGCCTACATCCTTAATGTCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTTAGAAGAGCTAGGTTGAAAGTAGCCTACATCCTTAATGTCA  1037

seq1  GAAGCAGTCATCACCTTTTAATAAGGAATTC  1074
      |||||||||||||||||||||||||||||||
seq2  GAAGCAGTCATCACCTTTTAATAAGGAATTC  1068