BAC Information

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BAC

Clone NameB6Ng01-306B13
Chromosome1 (Build37)
Map Location 100,371,942 - 100,373,031
singlet/doubletsinglet
Overlap geneSlco6d1
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, LOC100041868
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306B13.bB6Ng01-306B13.g
ACCGA099222GA099223
length1,1041,128
definitionB6Ng01-306B13.b B6Ng01-306B13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgacaaatggagattctccacagatacttaaaagttacact
catacaagaaattatcagggcccaagaaatagggggtttatagtattgca
gtattcatgagaaggtctgctagagcagaacccctggtaatgggcttaac
aatagactagctttatacctggctcccttcttggtggcagcggcctggtc
cctgccttcttttgatgtatacattccttttgtattgtgtcactgtaact
tggtgaatgtatctcacctggtttcttgttattcttctgtataaaaagtt
tgatgctcgacttgacaaattacattcagatttctacacaatctcctgtg
tgcatctgtctgtcatttgccaactccttgcccacctgcaactagagacc
ctttccacgcagatgaaaggacccagagggtctgcggcacacaatcagtc
ttgtctgcatcctacctcatttcaacaaacaaaattagttaaaatcttga
ccaataccttaaatcaagctaaagggaaaaatagcactttagtgctaata
aagtacaacaagtaaagatgcatgccaccaatacctgggacccacatggt
agtgcaaaaatgttgactagtgtaagagtgtttttcttggaaggaaagga
caagcatggctcatatccattatacaaagtttggattttcaaaggtcagg
gtttagatatgtgtttgttttgttttatttctgttcttcctgttataatt
tactatgagtacaaatatcacctggccacttttcatatcacttcatggga
cctgtgcctcaggaaaatgggctatgtcttttagaattgttgacaatgag
gattcaaaccattaccactagtaacatcagattattgtcgtttttcttgg
tcactctccagtattggcagtaaattcccggttgtgggagacaacacaga
cttgaatatcaacttagagaaatcagatgggttctaactggctatcattt
gtaatatgagggtattatccatgctactgatgaaaaagtcatcatcggta
cacccagacattaacttgaacactagataaacttagcaggtgtgccattg
tggt
gaattctttgtttagctctgtacttcgttttcaaatagggttatttgatt
ttctggagtccagcttcttgagttctttatttgtctatataaactgatca
tgatttaactttggtattatctattgagaaaattgtccattttatttaga
ttttccagttttggcggggtatagattcttgaactatgccctaataattc
tttcaattttcttagagtctgttatgtcccggttttcatttctgatttta
tctttttggctactctttctctccattttacttagtttggctatgggtat
gcttatattgttgatttttcaaagaaccaacttttggatacaacaattat
ttgtatggttttgtttctatttctttatttcagcttctatttatttcagc
agtcagatggatttttttcctgccatctactcctcttgagtatgtttgct
tctttttcttctagagatttcagttatgctgttaagttgctaacattgta
tctgttcagtttctttatgaaggcacatagtgagatgaactttcctttta
gcactgcttccattgtgtcttatatgtttggatatattttgcattagttt
taattgatctctagaaagttttaaaatttttcctttatgtttgccttgtc
ccagcagttgcttagtagagagttattcaatttccagtagtttgtactca
taccattgtttctgttgttgttgaaatctagctttaatctatgatgatct
gataggctacagcttgttatttcaattttcttgtatctggtcagacttcc
tttgtgactgagtatgtgatcgattttggagaaaggttctgagaggtgat
tttgtgttgggtgaaatgttttgcaaatatcatctattagatatatttgg
tcttataggtctcttagctccagcatttttctgttagttgtttttttttt
tcatctttctagatgactatgtattggttagagtgagttatgactgttat
atgtgtgagttaacttgtgattagatgtagcattttttttccaatggtgg
gaccagtcctgggagcaagatgttagaaagtgaagtcaattaagctgatt
tcccttgagaaatatgaaaatgttgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100371942_100373031
seq2: B6Ng01-306B13.b_69_1152 (reverse)

seq1  ACCACATGGGCACACCTTGCTAAGTTTATCTAGTTGTCAGGTTTAATGTC  50
      ||||||  |||||||| |||||||||||||||||  ||| | ||||||||
seq2  ACCACAATGGCACACC-TGCTAAGTTTATCTAGTGTTCAAG-TTAATGTC  48

seq1  TGGGTGTACCCGATGATGACTTTTTCCATCAGTAGCATGGATAATACCCT  100
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TGGGTGTA-CCGATGATGACTTTTT-CATCAGTAGCATGGATAATACCCT  96

seq1  CCATATTACAAATGATAGCCAGTTAGAA-CCATCTTGATTTCTCTAAGTT  149
       ||||||||||||||||||||||||||| ||||| ||||||||||||| |
seq2  -CATATTACAAATGATAGCCAGTTAGAACCCATC-TGATTTCTCTAAG-T  143

seq1  TGATTATTCAAGTCTGTGTTGTCTCCCACAACC-GGAATTTACTGCCAAT  198
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGA-TATTCAAGTCTGTGTTGTCTCCCACAACCGGGAATTTACTGCCAAT  192

seq1  ACTGGAGAGTGACCAAGAAAAACGACAATAATCTGATGTTACTAGTGGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGTGACCAAGAAAAACGACAATAATCTGATGTTACTAGTGGTA  242

seq1  ATGGTTTGAATCCTCATTGTCAACAATTCTAAAAGACATAGCCCATTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGAATCCTCATTGTCAACAATTCTAAAAGACATAGCCCATTTTC  292

seq1  CTGAGGCACAGGTCCCATGAAGTGATATGAAAAGTGGCCAGGTGATATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCACAGGTCCCATGAAGTGATATGAAAAGTGGCCAGGTGATATTT  342

seq1  GTACTCATAGTAAATTATAACAGGAAGAACAGAAATAAAACAAAACAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATAGTAAATTATAACAGGAAGAACAGAAATAAAACAAAACAAAC  392

seq1  ACATATCTAAACCCTGACCTTTGAAAATCCAAACTTTGTATAATGGATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTAAACCCTGACCTTTGAAAATCCAAACTTTGTATAATGGATAT  442

seq1  GAGCCATGCTTGTCCTTTCCTTCCAAGAAAAACACTCTTACACTAGTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGCTTGTCCTTTCCTTCCAAGAAAAACACTCTTACACTAGTCAA  492

seq1  CATTTTTGCACTACCATGTGGGTCCCAGGTATTGGTGGCATGCATCTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCACTACCATGTGGGTCCCAGGTATTGGTGGCATGCATCTTTA  542

seq1  CTTGTTGTACTTTATTAGCACTAAAGTGCTATTTTTCCCTTTAGCTTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTACTTTATTAGCACTAAAGTGCTATTTTTCCCTTTAGCTTGAT  592

seq1  TTAAGGTATTGGTCAAGATTTTAACTAATTTTGTTTGTTGAAATGAGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTATTGGTCAAGATTTTAACTAATTTTGTTTGTTGAAATGAGGTA  642

seq1  GGATGCAGACAAGACTGATTGTGTGCCGCAGACCCTCTGGGTCCTTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGACAAGACTGATTGTGTGCCGCAGACCCTCTGGGTCCTTTCAT  692

seq1  CTGCGTGGAAAGGGTCTCTAGTTGCAGGTGGGCAAGGAGTTGGCAAATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGGAAAGGGTCTCTAGTTGCAGGTGGGCAAGGAGTTGGCAAATGA  742

seq1  CAGACAGATGCACACAGGAGATTGTGTAGAAATCTGAATGTAATTTGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATGCACACAGGAGATTGTGTAGAAATCTGAATGTAATTTGTCA  792

seq1  AGTCGAGCATCAAACTTTTTATACAGAAGAATAACAAGAAACCAGGTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGCATCAAACTTTTTATACAGAAGAATAACAAGAAACCAGGTGAG  842

seq1  ATACATTCACCAAGTTACAGTGACACAATACAAAAGGAATGTATACATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCACCAAGTTACAGTGACACAATACAAAAGGAATGTATACATCA  892

seq1  AAAGAAGGCAGGGACCAGGCCGCTGCCACCAAGAAGGGAGCCAGGTATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCAGGGACCAGGCCGCTGCCACCAAGAAGGGAGCCAGGTATAA  942

seq1  AGCTAGTCTATTGTTAAGCCCATTACCAGGGGTTCTGCTCTAGCAGACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTCTATTGTTAAGCCCATTACCAGGGGTTCTGCTCTAGCAGACCT  992

seq1  TCTCATGAATACTGCAATACTATAAACCCCCTATTTCTTGGGCCCTGATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAATACTGCAATACTATAAACCCCCTATTTCTTGGGCCCTGATA  1042

seq1  ATTTCTTGTATGAGTGTAACTTTTAAGTATCTGTGGAGAATC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTATGAGTGTAACTTTTAAGTATCTGTGGAGAATC  1084