BAC Information

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BAC

Clone NameB6Ng01-306C05
Chromosome1 (Build37)
Map Location 65,987,565 - 65,988,571
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306C05.bB6Ng01-306C05.g
ACCGA099252GA099253
length1,0061,185
definitionB6Ng01-306C05.b B6Ng01-306C05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttggaatatttttaaggattcccctgcccccaaaatttgtca
ttcctgtttcaaaagtgatggggatgacacagagatttaaatatttcctt
cctcatgtacgaggaaggaaatatttaaatctaaaactaattcccactta
aaatttgttttaatagtgcacttcagttgataaatcttaaagcatttttg
attgtgaattaagcatctctaatatctctggcatctatacagtataagga
aaagctaagagactccatttgtgatttctgataatatgaattacattcat
taatttaaagcactaaactttcacttagactgaaattacagcttcaattt
accacagagattttgtacacaaatgaagagattgtgttaagtgatgcata
accaagagatgatttgtggaaagaaatggctgcttcttgattaatcaagt
aagctcatctccatgccaggagttacaggacttgaaaaattgagcaattc
agagtaacaattaaaactcaaaaatatgaggcaaataatggaattaaaaa
ttcggcagacatattaatggatatttctacaaacccatataaatggccaa
tatgcaatggaaaagatgctcaacattattaatgagaagttatgagacac
cacttcacaagaatgtctccgatgacttattagaagtcatgtaataaaaa
ccatggagatgaatgtagagaaattagaaccgccatgtgctgtggtgtgg
gcatgtagaaaaggtgcacccactttggaaaccatgtattagttcttcaa
atcattaaacattgatttattattttatctggcagtcttactactaagta
tttgtatgaagtaaattaagacctatatctacataaaaactttaccaata
aataatgctcatagcagcattaatcatagtcatcaaaggtaggagcaact
caaacatccaatcaatgatgagaggaaaggaaaggaaggaaaggaaagga
aggaaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtctc
ctatttgatttagaataggtatagatcgtttcccaatctgttggtggtct
ttttatcttattgactgtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttactgcgcaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccctac
tttctcctatatacgtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgacctttgtacaaggaaataggaatggatcaattcgc
atttttctacatgataacaaccaattgtgccagcaccatttgttgaaaat
gctctctttcttccactggatggttttagctcacttgtcgaagatcaagt
gaccataggtgtgtgggtacatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtaaatctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagaatttcgctctcctagttttttttgttattccagatg
aatttgcagattgctctttgaattcgttgaagaattgagttggaattttg
atggggattgcattgattctgtagattgcttttggtagatagccattttt
actatattgatcctgccaatccatgagaaagagagatctttccatcttct
gagatctttaatttctttcttcaaagacttgaagttcttgtcatacagat
ctttcactttccttagagtcacaccaagatattttatattatttgtgact
attgagaagggtgttgtttccataaatttctttctcagcctgttaattct
ttgtgtagaagaaatgccattgacttgtttgagtaattttatatcagctt
acttcactgaaagctggtttatcaagttaggagttcctctggttgaattt
tttaggttcacttataattactatcaattcatctgcaaaaagggataatt
ctggagacttctttccttttctccacaatatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65987565_65988571
seq2: B6Ng01-306C05.b_44_1049

seq1  GAATTCTTTTGGAATATTTTTAAGGATTCCCCTGCCCCCAAAATTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGAATATTTTTAAGGATTCCCCTGCCCCCAAAATTTGTCA  50

seq1  TTCCTGTTTCAAAAGTGATGGGGATGACACAGAGATTTAAATATTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTCAAAAGTGATGGGGATGACACAGAGATTTAAATATTTCCTT  100

seq1  CCTCATGTACGAGGAAGGAAATATTTAAATCTAAAACTAATTCCCACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTACGAGGAAGGAAATATTTAAATCTAAAACTAATTCCCACTTA  150

seq1  AAATTTGTTTTAATAGTGCACTTCAGTTGATAAATCTTAAAGCATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTTTAATAGTGCACTTCAGTTGATAAATCTTAAAGCATTTTTG  200

seq1  ATTGTGAATTAAGCATCTCTAATATCTCTGGCATCTATACAGTATAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATTAAGCATCTCTAATATCTCTGGCATCTATACAGTATAAGGA  250

seq1  AAAGCTAAGAGACTCCATTTGTGATTTCTGATAATATGAATTACATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGAGACTCCATTTGTGATTTCTGATAATATGAATTACATTCAT  300

seq1  TAATTTAAAGCACTAAACTTTCACTTAGACTGAAATTACAGCTTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAGCACTAAACTTTCACTTAGACTGAAATTACAGCTTCAATTT  350

seq1  ACCACAGAGATTTTGTACACAAATGAAGAGATTGTGTTAAGTGATGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGATTTTGTACACAAATGAAGAGATTGTGTTAAGTGATGCATA  400

seq1  ACCAAGAGATGATTTGTGGAAAGAAATGGCTGCTTCTTGATTAATCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGATGATTTGTGGAAAGAAATGGCTGCTTCTTGATTAATCAAGT  450

seq1  AAGCTCATCTCCATGCCAGGAGTTACAGGACTTGAAAAATTGAGCAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATCTCCATGCCAGGAGTTACAGGACTTGAAAAATTGAGCAATTC  500

seq1  AGAGTAACAATTAAAACTCAAAAATATGAGGCAAATAATGGAATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACAATTAAAACTCAAAAATATGAGGCAAATAATGGAATTAAAAA  550

seq1  TTCGGCAGACATATTAATGGATATTTCTACAAACCCATATAAATGGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCAGACATATTAATGGATATTTCTACAAACCCATATAAATGGCCAA  600

seq1  TATGCAATGGAAAAGATGCTCAACATTATTAATGAGAAGTTATGAGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATGGAAAAGATGCTCAACATTATTAATGAGAAGTTATGAGACAC  650

seq1  CACTTCACAAGAATGTCTCCGATGACTTATTAGAAGTCATGTAATAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACAAGAATGTCTCCGATGACTTATTAGAAGTCATGTAATAAAAA  700

seq1  CCATGGAGATGAATGTAGAGAAATTAGAACCGCCATGTGCTGTGGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGATGAATGTAGAGAAATTAGAACCGCCATGTGCTGTGGTGTGG  750

seq1  GCATGTAGAAAAGGTGCACCCACTTTGGAAACCATGTATTAGTTCTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGAAAAGGTGCACCCACTTTGGAAACCATGTATTAGTTCTTCAA  800

seq1  ATCATTAAACATTGATTTATTATTTTATCTGGCAGTCTTACTACTAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAACATTGATTTATTATTTTATCTGGCAGTCTTACTACTAAGTA  850

seq1  TTTGTATGAAGTAAATTAAGACCTATATCTACATAAAAAC-TTACCAATA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTGTATGAAGTAAATTAAGACCTATATCTACATAAAAACTTTACCAATA  900

seq1  AATAATGCTCATAGCAGCATTAATCATAGTCATCAAAGGTAGGAGCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTCATAGCAGCATTAATCATAGTCATCAAAGGTAGGAGCAACT  950

seq1  CAAACATCCAATCAATGATGAGAGGAAAGGAAAGGAAAGGAAAGGAAAGG  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAACATCCAATCAATGATGAGAGGAAAGGAAAGG-AAGGAAAGGAAAGG  999

seq1  AAAGGAAA  1007
       |||||||
seq2  -AAGGAAA  1006