BAC Information

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BAC

Clone NameB6Ng01-306E15
Chromosome1 (Build37)
Map Location 155,211,472 - 155,273,868
singlet/doubletdoublet
Overlap geneEG626058, 1700012A16Rik
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306E15.bB6Ng01-306E15.g
ACCGA099366GA099367
length3121,154
definitionB6Ng01-306E15.b B6Ng01-306E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,273,557 - 155,273,868)(155,211,472 - 155,212,646)
sequence
atttctttactattgaaacaaaaatctcactattgagactgacctaggtt
aaccttaaactcacaattctcgggctccagcatcctcccaagtactggga
tgggcaggtggattattgtgagttctggcccaacctggtctacaaaagac
aaacaaggcatgagtcaccatgctcagccaatttttatacccatcgctgc
aacgaatatacttgtacacaaattcttttgctatactttaaataaaatgc
agtattaaaatgtatgctatttgttctgtttggtggggtttttttgttgt
tgttgttgtttg
gaattctcaccaacccttattttatctctgtcctcactggatggtttcca
ctctctaatctgtctttaagctcagatcttctggcctctcctgatccatt
ctaatgctgaggttttttttctctgttttttatttgacttatcatgtttt
cttcccaacatttcaggttggctttccttcagtgtttcctctttattaaa
ttctctttcatagtatccatcacctgcattattttattcacaactttgtg
tctttgagcctgtgaataatcattattttgggttttctgtctggggtttt
tatctgactcactctcactagataccatggctgtagggttaataactttc
agaggagttatgtcatagaacttgaatggagtaatattgaccatacagtt
cagaaaataatttctcaaagcaggagttcatggtgccaggtgtaagctcc
atgctatactctgagtaagatattaactgggagagcagcaacagggattt
aatattaccaatgtacaattgtcatactagctgatttatatcaatggtcc
ctgtgacttccgtaactattggataataataaacaaccaaggagggtatg
aagtataccaagactttagttaataacattaggagtgggaaggatgcact
gctggtacagctgtgctgagctgaaagttgatggtatcagatcctctgga
tctagtaggttccatgagttccatgtggtgctatgttcgggaggagaaaa
tgggaggcattggtctctggaacctcagtgctcttttggaatgactcttt
aaaatacacacacacacacacacacacacacacacacacacacacacaca
tgcacacaaacactatttattatataccctaggttctttttttttaagtg
tgtgtgtgtgtgcgtgtgtttgtgtttggtgcttacaaacaaagaacaca
tgtgtcaaatacaaatgtagagtcagagacactctctgagtggtctctct
ctgatacttgtgagatctgtaatggaattcagatcatcaggcaggcacac
agcctcctctctaatcaatccttgtctagaggtttcggtcaccgtacttc
acttaaaaaggacaactagttagaaacatggctgatgtatacccaatgaa
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155273557_155273868
seq2: B6Ng01-306E15.b_58_369 (reverse)

seq1  CAAACAACAACAACAACAAAAAAACCCCACCAAACAGAACAAATAGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACAACAACAAAAAAACCCCACCAAACAGAACAAATAGCATA  50

seq1  CATTTTAATACTGCATTTTATTTAAAGTATAGCAAAAGAATTTGTGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATACTGCATTTTATTTAAAGTATAGCAAAAGAATTTGTGTACA  100

seq1  AGTATATTCGTTGCAGCGATGGGTATAAAAATTGGCTGAGCATGGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTCGTTGCAGCGATGGGTATAAAAATTGGCTGAGCATGGTGACT  150

seq1  CATGCCTTGTTTGTCTTTTGTAGACCAGGTTGGGCCAGAACTCACAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGTTTGTCTTTTGTAGACCAGGTTGGGCCAGAACTCACAATAA  200

seq1  TCCACCTGCCCATCCCAGTACTTGGGAGGATGCTGGAGCCCGAGAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCCATCCCAGTACTTGGGAGGATGCTGGAGCCCGAGAATTGT  250

seq1  GAGTTTAAGGTTAACCTAGGTCAGTCTCAATAGTGAGATTTTTGTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAGGTTAACCTAGGTCAGTCTCAATAGTGAGATTTTTGTTTCAA  300

seq1  TAGTAAAGAAAT  312
      ||||||||||||
seq2  TAGTAAAGAAAT  312

seq1: chr1_155211472_155212646
seq2: B6Ng01-306E15.g_68_1221

seq1  GAATTCTCACCAACCCTTATTTTATCTCTGTCCTCACTGGATGGTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCAACCCTTATTTTATCTCTGTCCTCACTGGATGGTTTCCA  50

seq1  CTCTCTAATCTGTCTTTAAGCTCAGATCTTCTGGCCTCTCCTGATCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAATCTGTCTTTAAGCTCAGATCTTCTGGCCTCTCCTGATCCATT  100

seq1  CTAATGCTGAGGTTTTTTTTCTCTGTTTTTTATTTGACTTATCATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTGAGGTTTTTTTTCTCTGTTTTTTATTTGACTTATCATGTTTT  150

seq1  CTTCCCAACATTTCAGGTTGGCTTTCCTTCAGTGTTTCCTCTTTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAACATTTCAGGTTGGCTTTCCTTCAGTGTTTCCTCTTTATTAAA  200

seq1  TTCTCTTTCATAGTATCCATCACCTGCATTATTTTATTCACAACTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCATAGTATCCATCACCTGCATTATTTTATTCACAACTTTGTG  250

seq1  TCTTTGAGCCTGTGAATAATCATTATTTTGGGTTTTCTGTCTGGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCCTGTGAATAATCATTATTTTGGGTTTTCTGTCTGGGGTTTT  300

seq1  TATCTGACTCACTCTCACTAGATACCATGGCTGTAGGGTTAATAACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACTCACTCTCACTAGATACCATGGCTGTAGGGTTAATAACTTTC  350

seq1  AGAGGAGTTATGTCATAGAACTTGAATGGAGTAATATTGACCATACAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTTATGTCATAGAACTTGAATGGAGTAATATTGACCATACAGTT  400

seq1  CAGAAAATAATTTCTCAAAGCAGGAGTTCATGGTGCCAGGTGTAAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATAATTTCTCAAAGCAGGAGTTCATGGTGCCAGGTGTAAGCTCC  450

seq1  ATGCTATACTCTGAGTAAGATATTAACTGGGAGAGCAGCAACAGGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATACTCTGAGTAAGATATTAACTGGGAGAGCAGCAACAGGGATTT  500

seq1  AATATTACCAATGTACAATTGTCATACTAGCTGATTTATATCAATGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACCAATGTACAATTGTCATACTAGCTGATTTATATCAATGGTCC  550

seq1  CTGTGACTTCCGTAACTATTGGATAATAATAAACAACCAAGGAGGGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTCCGTAACTATTGGATAATAATAAACAACCAAGGAGGGTATG  600

seq1  AAGTATACCAAGACTTTAGTTAATAACATTAGGAGTGGGAAGGATGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACCAAGACTTTAGTTAATAACATTAGGAGTGGGAAGGATGCACT  650

seq1  GCTGGTACAGCTGTGCTGAGCTGAAAGTTGATGGTATCAGATCCTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTACAGCTGTGCTGAGCTGAAAGTTGATGGTATCAGATCCTCTGGA  700

seq1  TCTAGTAGGTTCCATGAGTTCCATGTGGTGCTATGTTCGGGAGGAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAGGTTCCATGAGTTCCATGTGGTGCTATGTTCGGGAGGAGAAAA  750

seq1  TGGGAGGCATTGGTCTCTGGAACCTCAGTGCTCTTTTGGAATGACTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCATTGGTCTCTGGAACCTCAGTGCTCTTTTGGAATGACTCTTT  800

seq1  AAAATACACACACACACACACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACACACACACACACACACACACACACACACACACACACACACA  850

seq1  TGCACACAAACACTATTTATTATATACCCTAGGTTCTTTTTTTTTAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAAACACTATTTATTATATACCCTAGGTTCTTTTTTTTTAAGTG  900

seq1  TGTGTGTGTGTGCGTGTGTTTGTGTTTGGTGCTTACAAACAAAG-ACACA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTGTGTGTGCGTGTGTTTGTGTTTGGTGCTTACAAACAAAGAACACA  950

seq1  TGTGTCAAAATACAAATGTAGAAGTCAGAGGACAACTCTCTGGAGTTGTT  999
      |||||| |||||||||||||| ||||||| ||| ||||||| |||| || 
seq2  TGTGTC-AAATACAAATGTAG-AGTCAGA-GAC-ACTCTCT-GAGTGGTC  995

seq1  TCTCTCCTGATACTTTGTGAGATCCTGGTATTGAATTCAGATCATCAGGG  1049
      ||||| ||||||| ||||||||| |||  || ||||||||||||||||| 
seq2  TCTCT-CTGATAC-TTGTGAGAT-CTGTAATGGAATTCAGATCATCAGGC  1042

seq1  CAGCACACAAGCTCCTCTCT-ATC-ATACTGGTCCCAAGAAGTTTGTGCC  1097
        |||||||  ||||||||| ||| || || ||  | ||| ||||  | |
seq2  AGGCACACAGCCTCCTCTCTAATCAATCCTTGT--CTAGAGGTTTCGGTC  1090

seq1  ACCATACCTCACTTAAAAAAAGAAAAAAAAACTTAGTTATGAAAAAAAAT  1147
      ||| ||| ||||||  |||||| | ||      |||||| |||| |    
seq2  ACCGTACTTCACTT--AAAAAGGACAA-----CTAGTTA-GAAACA----  1128

seq1  TGTCTGATTGAAAACACCAATGAACCTG  1175
      || |||| || | || ||||||||||||
seq2  TGGCTGA-TGTATAC-CCAATGAACCTG  1154