BAC Information

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BAC

Clone NameB6Ng01-307F13
Chromosome1 (Build37)
Map Location 82,565,573 - 82,682,807
singlet/doubletdoublet
Overlap geneCol4a4, Col4a3
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F13.bB6Ng01-307F13.g
ACCGA100142GA100143
length1,1171,141
definitionB6Ng01-307F13.b B6Ng01-307F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,565,573 - 82,566,683)(82,681,665 - 82,682,807)
sequence
gaattctaggatgatacagacttttataatagaaaagtagatgaatataa
tacaaaaacaagcttggaaaaaatcagataagcttaactagaaaaatgct
ctcaagccagcatcatgggggggggggcgttctctaatgaatgtgaggta
aatggacaagtcttattctccctgcttaacatgacacaggcactgactct
tagctgaattaaagaataagggacttgggagagccaagaagccagggctt
ctcatcgcttgacccaggtagtaaaggagagtagacatcattttcaatta
ctttccaaaggtctctgataatcaagagacttgagttgggtcactgtcac
tcaagaagtcttcagcccggaatggcaggcagcccttacagggcacctta
aaacttttgagggtgggttcataatttagattcttccttgagggagcaga
agaaagaaggcttgttacaggctgagatttctctagagctaaaaagcgtc
cagactgaatcttacatttcttggtttaatcttgaaatgtctcaactact
tcttttctgttccaaataaaaagaatttaaggaagggctgtggttgttat
aagataaagacctctccaacacccgggcaacgctataagcagctttgatt
gcaaggatatctaagtgctcaggttgtgttttatttgggacatgaaggcc
gagccctagtttaaacattcttttttaaaacacacacacacactgcaata
aattatatatacaacaacatgaattttctatgtacagaataaattaacat
acttaccccatattcatattgtatagtaaagaggataaatattagtgacc
tatggaaaaacaaaaatatatactaagtgtttgctttaaaggggaaagaa
tctagacagagttacagtaccaattccggaaaggctaactctcgatttct
gactgctaccaccggaacacaatcaatgtcattttctctcttagctgcca
acatcaccttcttcctccatcagtcagggaaggttatactgaaaggcctt
ctgtatggacattactgaaaggccaatgggtgtagaaaatgtagggcacc
caagagttgagcttgaa
gaattctcaaaaaacaggtgtgtcatggcaccctagcattcaagaggtta
agtcaggagaacattgaatttgaaaccagactggctacataatgaagtca
aggccagcatggattatatagtgagatcctgtctcaaaaaatactttaaa
aatggatcatgcaggtatttgaaaggcttagataacacgttcccttttgt
tgttcaatctgtgatcctcaactatgtgtcaaaaacactaagtggcaaca
tataccttcacttaagtagatttttttttccccttaagtagacgatagct
actacttcctagctttcctgtatcaaaagtaagtatgtcctataaattat
ctttttcccaaagatcattttctctgttggcaaaattctgagatttggtc
tgctttcagagcttgtcagatggtaattccaggaagctctttggtaggcc
tggagagactattctgtctttctaacaatgggctttgcggaattcgtttt
tctttgttttgggatggggttttactatgttgtcttggctggcctggaac
ttgctgtgtagagcaggctggccttaaactcagaggtttggtagcctttt
tgtaccgagttaatgcttgtgtgccaagcacaaatgtatacacacacaca
cacacacacacacacacacacacacacacacatattacagtttgagaatt
cgtaattttaatcccatttccaaattcattattgtaaatactgcataata
tcatattgtctaccagaataaacttttacagaaacacaacaatattattg
atgaatagctgatttctttaagtcacatgagatctttctccactataatg
tgggtctgcagccacaatcttttttttttaatgcttttttttggtaagag
tttatcctcaaaggtaatttttactcagaaattctgtttgttttaatgtt
gctttgaggtccaatctgatcaggaggattagattgagcctcttagaatt
ggcttgagctagcaaccttataggtgaaccacatatgaacctaccagtac
ccctcggagctcgtgtctctactgcatattgtatcagaagatggctagtc
cgtcatcatggaaagaaaggtcatggtcgtgcaaactttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82565573_82566683
seq2: B6Ng01-307F13.b_45_1161

seq1  GAATTCTAGGATGATACAGACTTTTATAATAGAAAAGTAGATGAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATGATACAGACTTTTATAATAGAAAAGTAGATGAATATAA  50

seq1  TACAAAAACAAGCTTGGAAAAAATCAGATAAGCTTAACTAGAAAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACAAGCTTGGAAAAAATCAGATAAGCTTAACTAGAAAAATGCT  100

seq1  CTCAAGCCAGCATCATGGGGGGGGGGGCGTTCTCTAATGAATGTGAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCAGCATCATGGGGGGGGGGGCGTTCTCTAATGAATGTGAGGTA  150

seq1  AATGGACAAGTCTTATTCTCCCTGCTTAACATGACACAGGCACTGACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAAGTCTTATTCTCCCTGCTTAACATGACACAGGCACTGACTCT  200

seq1  TAGCTGAATTAAAGAATAAGGGACTTGGGAGAGCCAAGAAGCCAGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATTAAAGAATAAGGGACTTGGGAGAGCCAAGAAGCCAGGGCTT  250

seq1  CTCATCGCTTGACCCAGGTAGTAAAGGAGAGTAGACATCATTTTCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGCTTGACCCAGGTAGTAAAGGAGAGTAGACATCATTTTCAATTA  300

seq1  CTTTCCAAAGGTCTCTGATAATCAAGAGACTTGAGTTGGGTCACTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAGGTCTCTGATAATCAAGAGACTTGAGTTGGGTCACTGTCAC  350

seq1  TCAAGAAGTCTTCAGCCCGGAATGGCAGGCAGCCCTTACAGGGCACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTCTTCAGCCCGGAATGGCAGGCAGCCCTTACAGGGCACCTTA  400

seq1  AAACTTTTGAGGGTGGGTTCATAATTTAGATTCTTCCTTGAGGGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGAGGGTGGGTTCATAATTTAGATTCTTCCTTGAGGGAGCAGA  450

seq1  AGAAAGAAGGCTTGTTACAGGCTGAGATTTCTCTAGAGCTAAAAAGCGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGGCTTGTTACAGGCTGAGATTTCTCTAGAGCTAAAAAGCGTC  500

seq1  CAGACTGAATCTTACATTTCTTGGTTTAATCTTGAAATGTCTCAACTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAATCTTACATTTCTTGGTTTAATCTTGAAATGTCTCAACTACT  550

seq1  TCTTTTCTGTTCCAAATAAAAAGAATTTAAGGAAGGGCTGTGGTTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGTTCCAAATAAAAAGAATTTAAGGAAGGGCTGTGGTTGTTAT  600

seq1  AAGATAAAGACCTCTCCAACACCCGGGCAACGCTATAAGCAGCTTTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGACCTCTCCAACACCCGGGCAACGCTATAAGCAGCTTTGATT  650

seq1  GCAAGGATATCTAAGTGCTCAGGTTGTGTTTTATTTGGGACATGAAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATATCTAAGTGCTCAGGTTGTGTTTTATTTGGGACATGAAGGCC  700

seq1  GAGCCCTAGTTTAAACATTCTTTTTTAAAACACACACACACACTGCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGTTTAAACATTCTTTTTTAAAACACACACACACACTGCAATA  750

seq1  AATTATATATACAACAACATGAATTTTCTATGTACAGAATAAATTAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATATACAACAACATGAATTTTCTATGTACAGAATAAATTAACAT  800

seq1  ACTTACCCCATATTCATATTGTATAGTAAAGAGGATAAATATTAGTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCCCATATTCATATTGTATAGTAAAGAGGATAAATATTAGTGACC  850

seq1  TATGGAAAAACAAAAATATATACTAAGTGTTTGCTTT-AAGGGGAAAGAA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATGGAAAAACAAAAATATATACTAAGTGTTTGCTTTAAAGGGGAAAGAA  900

seq1  TCTAGACAGAGTTACAGTACCAATTCCGG-AAGGCTAACTCTCGA-TTCT  947
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TCTAGACAGAGTTACAGTACCAATTCCGGAAAGGCTAACTCTCGATTTCT  950

seq1  GACTGCTACCACCGG-ACACAATCAATGTCATTTTCTCTC-TAGCTGCCA  995
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GACTGCTACCACCGGAACACAATCAATGTCATTTTCTCTCTTAGCTGCCA  1000

seq1  ACATCACCT--CTCCTCCATCAGTCAAGGAAGG-TATACTG-AAGGCCTT  1041
      |||||||||   |||||||||||||| |||||| ||||||| ||||||||
seq2  ACATCACCTTCTTCCTCCATCAGTCAGGGAAGGTTATACTGAAAGGCCTT  1050

seq1  CTGTATGGACA-TACTG-AAGGCCA--TGGTGTAGGAAAATGTAGGGGCA  1087
      ||||||||||| ||||| |||||||   |||||| ||||||||||||   
seq2  CTGTATGGACATTACTGAAAGGCCAATGGGTGTA-GAAAATGTAGGGCAC  1099

seq1  CCAAGAGTGAGTTTGAGGCTTGAA  1111
      |||||||     |||| |||||||
seq2  CCAAGAG-----TTGA-GCTTGAA  1117

seq1: chr1_82681665_82682807
seq2: B6Ng01-307F13.g_65_1205 (reverse)

seq1  ATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAG  50
      ||||||||||||||||||   | ||| |||||||| ||||| | ||||| 
seq2  ATAAAGTTTGCACGACCA--TGACCTTTCTTTCCA-TGATGACGGACTA-  46

seq1  GCCATCTTCTGATAC-ATATGCAGTTAGAGACACGAGCTCCGGGGGGTAC  99
      ||||||||||||||| |||||||| ||||||||||||||||| |||||||
seq2  GCCATCTTCTGATACAATATGCAG-TAGAGACACGAGCTCCGAGGGGTAC  95

seq1  TGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCTAGCTCAAGCCAA  149
      ||||  ||||||| ||| ||| |||||||| |||||||||||||||||||
seq2  TGGTAGGTTCATA-TGTGGTT-CACCTATAAGGTTGCTAGCTCAAGCCAA  143

seq1  TTCTTAAGAGGCTCAAATCTAATCCTCTTGATCAGATTGGACCTC-AAGC  198
      ||| |||||||||| |||||||||||| ||||||||||||||||| ||||
seq2  TTC-TAAGAGGCTC-AATCTAATCCTCCTGATCAGATTGGACCTCAAAGC  191

seq1  AACATT-AAACAAACAGAATTTCTGAGTAAAAATTACCTTTGAGGATAAA  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAAACAAACAGAATTTCTGAGTAAAAATTACCTTTGAGGATAAA  241

seq1  CTCTTACCAAAAAAAAGCATT-AAAAAAAAAGATTGTGGCTGCAGACCCA  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTTACCAAAAAAAAGCATTAAAAAAAAAAGATTGTGGCTGCAGACCCA  291

seq1  CATTATAGTGGAGAAAGATCTCATGTGACTT-AAGAAATCAGCTATTCAT  345
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTATAGTGGAGAAAGATCTCATGTGACTTAAAGAAATCAGCTATTCAT  341

seq1  CAATAATATTGTTGTGTTTCTGTAAAAGTTTATTCTGGTAGACAATATGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTGTTGTGTTTCTGTAAAAGTTTATTCTGGTAGACAATATGA  391

seq1  TATTATGCAGTATTTACAATAATGAATTTGGAAATGGGATTAAAATTACG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGCAGTATTTACAATAATGAATTTGGAAATGGGATTAAAATTACG  441

seq1  AATTCTCAAACTGTAATA--TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  493
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AATTCTCAAACTGTAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  491

seq1  TGTGTGTGTGTATACATTTGTGCTTGGCACACAAGCATTAACTCGGTACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATACATTTGTGCTTGGCACACAAGCATTAACTCGGTACA  541

seq1  AAAAGGCTACCAAACCTCTGAGTTTAAGGCCAGCCTGCTCTACACAGCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTACCAAACCTCTGAGTTTAAGGCCAGCCTGCTCTACACAGCAA  591

seq1  GTTCCAGGCCAGCCAAGACAACATAGTAAAACCCCATCCCAAAACAAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGCCAGCCAAGACAACATAGTAAAACCCCATCCCAAAACAAAGA  641

seq1  AAAACGAATTCCGCAAAGCCCATTGTTAGAAAGACAGAATAGTCTCTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAATTCCGCAAAGCCCATTGTTAGAAAGACAGAATAGTCTCTCCA  691

seq1  GGCCTACCAAAGAGCTTCCTGGAATTACCATCTGACAAGCTCTGAAAGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACCAAAGAGCTTCCTGGAATTACCATCTGACAAGCTCTGAAAGCA  741

seq1  GACCAAATCTCAGAATTTTGCCAACAGAGAAAATGATCTTTGGGAAAAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATCTCAGAATTTTGCCAACAGAGAAAATGATCTTTGGGAAAAAG  791

seq1  ATAATTTATAGGACATACTTACTTTTGATACAGGAAAGCTAGGAAGTAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATAGGACATACTTACTTTTGATACAGGAAAGCTAGGAAGTAGT  841

seq1  AGCTATCGTCTACTTAAGGGGAAAAAAAAATCTACTTAAGTGAAGGTATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCGTCTACTTAAGGGGAAAAAAAAATCTACTTAAGTGAAGGTATA  891

seq1  TGTTGCCACTTAGTGTTTTTGACACATAGTTGAGGATCACAGATTGAACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCACTTAGTGTTTTTGACACATAGTTGAGGATCACAGATTGAACA  941

seq1  ACAAAAGGGAACGTGTTATCTAAGCCTTTCAAATACCTGCATGATCCATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGGAACGTGTTATCTAAGCCTTTCAAATACCTGCATGATCCATT  991

seq1  TTTAAAGTATTTTTTGAGACAGGATCTCACTATATAATCCATGCTGGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTATTTTTTGAGACAGGATCTCACTATATAATCCATGCTGGCCT  1041

seq1  TGACTTCATTATGTAGCCAGTCTGGTTTCAAATTCAATGTTCTCCTGACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATTATGTAGCCAGTCTGGTTTCAAATTCAATGTTCTCCTGACT  1091

seq1  TAACCTCTTGAATGCTAGGGTGCCATGACACACCTGTTTTTTGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTTGAATGCTAGGGTGCCATGACACACCTGTTTTTTGAGAATTC  1141