BAC Information

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BAC

Clone NameB6Ng01-307H11
Chromosome1 (Build37)
Map Location 158,593,746 - 158,756,325
singlet/doubletdoublet
Overlap geneTor3a, C530043G21Rik, LOC433368, Ralgps2
Upstream geneQscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2
Downstream geneAngptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307H11.bB6Ng01-307H11.g
ACCGA100230GA100231
length954984
definitionB6Ng01-307H11.b B6Ng01-307H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,593,746 - 158,594,311)(158,755,348 - 158,756,325)
sequence
gaattcaatcagtctgtcagtagtcatggcccacagtggatcattgcatt
ggatatagaaaaggtcttgggccgggcagtggtggcccacgcctttaatc
ccagcacttgggaggcagaggcaggcggatttctgagtttgaggccagcc
tgttctacaaagtgagttccaggacagccagggctatacagagaaaccct
gtctcgaaaagcaaaacaaaaaacaaaaacaaaaaaaaaaaaagaaaaga
aaaagaaagtcagaaaaagaaagggcctttgacaaaattcaacatccatt
catgataaaaagtcctagaagaatagggatacagaggattatttcaatat
aataaatgtgcagctgtttgcattatgaatagtaattatccatccccccc
cccaaaaaaaaaaaactctacacgagagggtctatgtgtagcttctggga
acctgcccccagttgattctgattagtaaataaagatgccaacagccaat
aactggggaggacagaccaaggcgggatttcaggtttcctgggcttggga
ccaggaggaggagggagatctgcagtgctggggtagagtgtggacagaga
agaggcaagtctgccatggagcagaaaagcaaggaaggggccccagactc
tgggccaagaaaacatggtcctgaagactgactaattgcagttaagagca
accaagatggagcataaaattagtaatagctggggattaacagcatggta
ggcagtggcccaactattgtgctgtttaaggaatattaagatatgaaagg
ctgtgtatgtttttcattcgagaacacagacctttggggctggtagtgac
ccgagttgggatttattaattaataattaatacacataatgcaatacaca
ggaagcccgaaaccaatgttatcctaaacagaggagaactcagcattcag
gatc
gaattccaaaccctaaacacagaattgcttctgaccccccagcgccaccc
agcacctgtgatgctggtcttctctttctatataaatgctgctaagtaaa
tgacaagacagattgttgcctgacgtaatacctctctatcaatgttcaaa
gtagccacgtgtgcagcgtcagccttgatagaggggaaaaaaaaaaagaa
cctgttttcagttaaaagcttgttattcaccaggcgtggtggcgcacgcc
tttgatcccagcactcaggaggcaaaggcaggcagatttctgagttcaag
gccagcctggtctacaaagtgagttctgggacagccagggctacacagaa
aaaccctgtctcgaaaaacaaaaaacaacaaaaaaaagtttgttattcca
atggaatatagtgtgctacttaagaaaaaagattttgtatacatatttcg
cttttccctctgtgcattaaaattatattctaatttagctgtagttttta
cttttgttgtgaatgtgtcttgtcagaaatgtagatgaaacatttatgaa
tctccgtggaatcaggatttattgaacattggtttcacaagtaccacaat
ttcatggcagcaatttgtcagatattgctacttgccaaaacaaacacagg
gtctcttattccagtcttaattgatattagctcaacgtcagatattacat
gtgacacaggcaggttgtggaatggctacagaggatcaagtaggcaggga
gcctcagctgggaaaccggaaatgagataacaaacgggcaggaggtctgt
gtgaggggctacaggatcggacttgagctgtagagctgagtgcagggaca
gagaacagaggcgggaccaaattcagatgaagggaacgaacagagacatg
gtcagtacatcccagacagacaagcagggagacagacagacataatttga
gtaagtccaccctccaaacagaggtgagcctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_158593746_158594311
seq2: B6Ng01-307H11.b_45_610

seq1  GAATTCAATCAGTCTGTCAGTAGTCATGGCCCACAGTGGATCATTGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAGTCTGTCAGTAGTCATGGCCCACAGTGGATCATTGCATT  50

seq1  GGATATAGAAAAGGTCTTGGGCCGGGCAGTGGTGGCCCACGCCTTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGAAAAGGTCTTGGGCCGGGCAGTGGTGGCCCACGCCTTTAATC  100

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCC  150

seq1  TGTTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT  200

seq1  GTCTCGAAAAGCAAAACAAAAAACAAAAACAAAAAAAAAAAAAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAGCAAAACAAAAAACAAAAACAAAAAAAAAAAAAGAAAAGA  250

seq1  AAAAGAAAGTCAGAAAAAGAAAGGGCCTTTGACAAAATTCAACATCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTCAGAAAAAGAAAGGGCCTTTGACAAAATTCAACATCCATT  300

seq1  CATGATAAAAAGTCCTAGAAGAATAGGGATACAGAGGATTATTTCAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAAAAGTCCTAGAAGAATAGGGATACAGAGGATTATTTCAATAT  350

seq1  AATAAATGTGCAGCTGTTTGCATTATGAATAGTAATTATCCATCCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTGCAGCTGTTTGCATTATGAATAGTAATTATCCATCCCCCCC  400

seq1  CCCAAAAAAAAAAAACTCTACACGAGAGGGTCTATGTGTAGCTTCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAAAAAAAACTCTACACGAGAGGGTCTATGTGTAGCTTCTGGGA  450

seq1  ACCTGCCCCCAGTTGATTCTGATTAGTAAATAAAGATGCCAACAGCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCCAGTTGATTCTGATTAGTAAATAAAGATGCCAACAGCCAAT  500

seq1  AACTGGGGAGGACAGACCAAGGCGGGATTTCAGGTTTCCTGGGCTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGAGGACAGACCAAGGCGGGATTTCAGGTTTCCTGGGCTTGGGA  550

seq1  CCAGGAGGAGGAGGGA  566
      ||||||||||||||||
seq2  CCAGGAGGAGGAGGGA  566

seq1: chr1_158755348_158756325
seq2: B6Ng01-307H11.g_65_1048 (reverse)

seq1  GTCA-GCTCACCTCTGTT--GAGG--TGACTTACTCAAATTATTGTCTGT  45
      |||| |||||||||||||  ||||   ||||||||||||||| |||||||
seq2  GTCAGGCTCACCTCTGTTTGGAGGGTGGACTTACTCAAATTA-TGTCTGT  49

seq1  CTGTCTCCCTGCTTGTCTGTCT-GGATGTACTGACCATGTCTCTGTTCGT  94
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTCTCCCTGCTTGTCTGTCTGGGATGTACTGACCATGTCTCTGTTCGT  99

seq1  T-CCTTCATCTGAATTTGGTCCCGCCTCTGTTCTCTGTCCCTGCACTCAG  143
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATCTGAATTTGGTCCCGCCTCTGTTCTCTGTCCCTGCACTCAG  149

seq1  CTCTACAGCTCAAGTCCGATCCTGTAGCCCCTCACACAGACCTCCTGCCC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGCTCAAGTCCGATCCTGTAGCCCCTCACACAGACCTCCTGCCC  199

seq1  GTTTGTTATCTCATTTCCGGTTTCCCAGCTGAGGCTCCCTGCCTACTTGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTATCTCATTTCCGGTTTCCCAGCTGAGGCTCCCTGCCTACTTGA  249

seq1  TCCTCTGTAGCCATTCCACAACCTGCCTGTGTCACATGTAATATCTGACG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTAGCCATTCCACAACCTGCCTGTGTCACATGTAATATCTGACG  299

seq1  TTGAGCTAATATCAATTAAGACTGGAATAAGAGACCCTGTGTTTGTTTTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTAATATCAATTAAGACTGGAATAAGAGACCCTGTGTTTGTTTTG  349

seq1  GCAAGTAGCAATATCTGACAAATTGCTGCCATGAAATTGTGGTACTTGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGCAATATCTGACAAATTGCTGCCATGAAATTGTGGTACTTGTG  399

seq1  AAACCAATGTTCAATAAATCCTGATTCCACGGAGATTCATAAATGTTTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGTTCAATAAATCCTGATTCCACGGAGATTCATAAATGTTTCA  449

seq1  TCTACATTTCTGACAAGACACATTCACAACAAAAGTAAAAACTACAGCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTCTGACAAGACACATTCACAACAAAAGTAAAAACTACAGCTA  499

seq1  AATTAGAATATAATTTTAATGCACAGAGGGAAAAGCGAAATATGTATACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATATAATTTTAATGCACAGAGGGAAAAGCGAAATATGTATACA  549

seq1  AAATCTTTTTTCTTAAGTAGCACACTATATTCCATTGGAATAACAAACTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTTCTTAAGTAGCACACTATATTCCATTGGAATAACAAACTT  599

seq1  TTTTTTGTTGTTTTTTGTTTTTCGAGACAGGGTTTTTCTGTGTAGCCCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTTTTTGTTTTTCGAGACAGGGTTTTTCTGTGTAGCCCTG  649

seq1  GCTGTCCCAGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  699

seq1  CTGCCTGCCTTTGCCTCCTGAGTGCTGGGATCAAAGGCGTGCGCCACCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTTTGCCTCCTGAGTGCTGGGATCAAAGGCGTGCGCCACCAC  749

seq1  GCCTGGTGAATAACAAGCTTTTAACTGAAAACAGGTTCTTTTTTTTTTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGAATAACAAGCTTTTAACTGAAAACAGGTTCTTTTTTTTTTTC  799

seq1  CCCTCTATCAAGGCTGACGCTGCACACGTGGCTACTTTGAACATTGATAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATCAAGGCTGACGCTGCACACGTGGCTACTTTGAACATTGATAG  849

seq1  AGAGGTATTACGTCAGGCAACAATCTGTCTTGTCATTTACTTAGCAGCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATTACGTCAGGCAACAATCTGTCTTGTCATTTACTTAGCAGCAT  899

seq1  TTATATAGAAAGAGAAGACCAGCATCACAGGTGCTGGGTGGCGCTGGGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAAAGAGAAGACCAGCATCACAGGTGCTGGGTGGCGCTGGGGG  949

seq1  GTCAGAAGCAATTCTGTGTTTAGGGTTTGGAATTC  978
      |||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGCAATTCTGTGTTTAGGGTTTGGAATTC  984