BAC Information

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BAC

Clone NameB6Ng01-307J16
Chromosome1 (Build37)
Map Location 135,357,206 - 135,482,014
singlet/doubletdoublet
Overlap geneLOC667371
Upstream geneRipk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
Downstream geneSnrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307J16.bB6Ng01-307J16.g
ACCGA100333GA100334
length1,101740
definitionB6Ng01-307J16.b B6Ng01-307J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,357,206 - 135,358,165)(135,481,277 - 135,482,014)
sequence
gaattcttggtctccagttggtggaactgtttgtgaagcattaggaggtg
tggccttgttggggaaggtgtgccacttgaggatggaacttgaagttata
aggaaagactgtggccttcccaattagctcttgctgtcctctgttggttt
taaaacaaaatcccaaacttttggtttaccaaataaagactcaggagttg
gatactagaagtacctagctgaccttcctaccctaccaacgtcctagaag
gaaacagctctttcttcacagtcccttcaacttctccttatgaacactcc
ctgtcaactggttgcttactctgcctccagacctatgattggctttattt
aatcctgtttacagaaagctctcaggttaaaggtgtgtgcaagggctgag
tcaaccacaacaaggttttgccagttcataaagtgatcaaatagcctgca
gcagtcctgagtaagctctcaggtgctgctccagaatcctgccagtaagc
cttctccactctgttatcatggactctaaccctttaaaatcataagccca
gttaaatgcttcctttcagaagttgccttggctattgtgtttcaacacag
caatagaaaagtaattaagactctcagggagcctccattctggcagggaa
ggcagtgaaaatgaatcaactgccaatgagaatgatgcatgaggggcaga
gagctgctgtgccaaaggacactgtcactgttaatttgtcagccagagat
acctcctggtatgagctgaagaaagctataatcaggcagaagaaatacca
tcaaaaaggtctaaagtgagtgcagctacatcaggaatagtttcttcatg
gagactgctttcagtgaattgctcctgcctctctagctcttaaaagagtt
atttgctgaataaagatcacaccaaaacttgaccaagttaaaacaataat
gatttttgtctctgattcttgggaacagttatgatccaggatcctttggc
ttggtgggctactcacagcaatggcagttctgttctggtctttccgcaga
tgagcggaaacaaagggaaaagaatggttggggaatacattcttaagggt
t
gaattcccactggtgccatattgctggattgttcctttaaattgtctggc
tgtcctggacctcggtctgtacaccaggctggccttgaactcagacaccc
atctgcctctgcctcccaagtgcctggattaaaagcgtgcgccaccaccg
cctgtcagctctgtgcctctgcaatcattcaattactgagacttcccgaa
gcctttgggttgactgcttgacttgtgttctcattgccaactgtgcctgg
tttttcttcagcatttctttgttaaattcctcctttatattttgtgttgt
ctttcttatttcattcaggtatttgtttcttgactgggagttcttttttt
taattttttatttcttagaacacagttattgttttgagttctttgggatt
tctaatttattctccctagttgctcttactgtagggttagtaaattttgg
agtagttctgctgcttgggttgtttgtttgtttgtttgtctgtttgtttt
gtttctttgtatttctgctttggggctgatctgcctcgggtttcagttga
agtattttcaggattcaagtggggcatggctgtggtagagtgaatatgcc
cactatacaaattgtcacacagccaaggaacaacagtggttctttgactt
cagtaattgttggaggataaacgatcaaaaataacatggtttgaattcaa
atttttagttaatagttattaggagtggaagggaaggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135357206_135358165
seq2: B6Ng01-307J16.b_172_1147

seq1  AGCTCTTGCTGTCCTCTGTTGGTTTTAAAACAAAATCCCAAACTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGCTGTCCTCTGTTGGTTTTAAAACAAAATCCCAAACTTTTGGT  50

seq1  TTACCAAATAAAGACTCAGGAGTTGGATACTAGAAGTACCTAGCTGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAATAAAGACTCAGGAGTTGGATACTAGAAGTACCTAGCTGACCT  100

seq1  TCCTACCCTACCAACGTCCTAGAAGGAAACAGCTCTTTCTTCACAGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCTACCAACGTCCTAGAAGGAAACAGCTCTTTCTTCACAGTCCC  150

seq1  TTCAACTTCTCCTTATGAACACTCCCTGTCAACTGGTTGCTTACTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTCTCCTTATGAACACTCCCTGTCAACTGGTTGCTTACTCTGCC  200

seq1  TCCAGACCTATGATTGGCTTTATTTAATCCTGTTTACAGAAAGCTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCTATGATTGGCTTTATTTAATCCTGTTTACAGAAAGCTCTCAG  250

seq1  GTTAAAGGTGTGTGCAAGGGCTGAGTCAACCACAACAAGGTTTTGCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGTGTGTGCAAGGGCTGAGTCAACCACAACAAGGTTTTGCCAGT  300

seq1  TCATAAAGTGATCAAATAGCCTGCAGCAGTCCTGAGTAAGCTCTCAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTGATCAAATAGCCTGCAGCAGTCCTGAGTAAGCTCTCAGGTG  350

seq1  CTGCTCCAGAATCCTGCCAGTAAGCCTTCTCCACTCTGTTATCATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGAATCCTGCCAGTAAGCCTTCTCCACTCTGTTATCATGGACT  400

seq1  CTAACCCTTTAAAATCATAAGCCCAGTTAAATGCTTCCTTTCAGAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTTTAAAATCATAAGCCCAGTTAAATGCTTCCTTTCAGAAGTTG  450

seq1  CCTTGGCTATTGTGTTTCAACACAGCAATAGAAAAGTAATTAAGACTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTATTGTGTTTCAACACAGCAATAGAAAAGTAATTAAGACTCTC  500

seq1  AGGGAGCCTCCATTCTGGCAGGGAAGGCAGTGAAAATGAATCAACTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCTCCATTCTGGCAGGGAAGGCAGTGAAAATGAATCAACTGCCA  550

seq1  ATGAGAATGATGCATGAGGGGCAGAGAGCTGCTGTGCCAAAGGACACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATGATGCATGAGGGGCAGAGAGCTGCTGTGCCAAAGGACACTGT  600

seq1  CACTGTTAATTTGTCAGCCAGAGATACCTCCTGGTATGAGCTGAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAATTTGTCAGCCAGAGATACCTCCTGGTATGAGCTGAAGAAAG  650

seq1  CTATAATCAGGCAGAAGAAATACCATCAAAAAGGTCTAAAGTGAGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCAGGCAGAAGAAATACCATCAAAAAGGTCTAAAGTGAGTGCAG  700

seq1  CTACATCAGGAAAAGTTTCTTCATGGAGACTGCTTTCAGTGAATTGCTCC  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTACATCAGGAATAGTTTCTTCATGGAGACTGCTTTCAGTGAATTGCTCC  750

seq1  TGCCTCTCTAGCTCTTAAAAGAGTTA-TTGCTGAATAAAAGATCACACCA  799
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TGCCTCTCTAGCTCTTAAAAGAGTTATTTGCTGAAT-AAAGATCACACCA  799

seq1  AAACTTGACCAAG-TAAAACAATAATGA-TTTTGTCTCTGATTCTT-GGA  846
      ||||||||||||| |||||||||||||| ||||||||||||||||| |||
seq2  AAACTTGACCAAGTTAAAACAATAATGATTTTTGTCTCTGATTCTTGGGA  849

seq1  ACAGTTATGATCCAGGATCC-TTGGCTT-GTGGGCTACTCACAGC-ATGG  893
      |||||||||||||||||||| ||||||| |||||||||||||||| ||||
seq2  ACAGTTATGATCCAGGATCCTTTGGCTTGGTGGGCTACTCACAGCAATGG  899

seq1  CAG-TCTG-TCT-GTC-TTCCGCAGAATGAGC-GAAACAAAGGGAAAAG-  937
      ||| |||| ||| ||| |||||||| |||||| |||||||||||||||| 
seq2  CAGTTCTGTTCTGGTCTTTCCGCAG-ATGAGCGGAAACAAAGGGAAAAGA  948

seq1  ATG--TGGGG-ATACA-TCTT-AGGGTT  960
      |||  ||||| ||||| |||| ||||||
seq2  ATGGTTGGGGAATACATTCTTAAGGGTT  976

seq1: chr1_135481277_135482014
seq2: B6Ng01-307J16.g_67_806 (reverse)

seq1  ACGCCTTCCCTTCCACTCCTAAT-ACTATTAACT-AAAATTTGAATTCAA  48
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ACGCCTTCCCTTCCACTCCTAATAACTATTAACTAAAAATTTGAATTCAA  50

seq1  ACCATGTTATTTTTGATCGTTTATCCTCCAACAATTACTGAAGTCAAAGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTATTTTTGATCGTTTATCCTCCAACAATTACTGAAGTCAAAGA  100

seq1  ACCACTGTTGTTCCTTGGCTGTGTGACAATTTGTATAGTGGGCATATTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTGTTCCTTGGCTGTGTGACAATTTGTATAGTGGGCATATTCA  150

seq1  CTCTACCACAGCCATGCCCCACTTGAATCCTGAAAATACTTCAACTGAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCACAGCCATGCCCCACTTGAATCCTGAAAATACTTCAACTGAAA  200

seq1  CCCGAGGCAGATCAGCCCCAAAGCAGAAATACAAAGAAACAAAACAAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCAGATCAGCCCCAAAGCAGAAATACAAAGAAACAAAACAAACA  250

seq1  GACAAACAAACAAACAAACAACCCAAGCAGCAGAACTACTCCAAAATTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAAACAAACAAACAACCCAAGCAGCAGAACTACTCCAAAATTTA  300

seq1  CTAACCCTACAGTAAGAGCAACTAGGGAGAATAAATTAGAAATCCCAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTACAGTAAGAGCAACTAGGGAGAATAAATTAGAAATCCCAAAG  350

seq1  AACTCAAAACAATAACTGTGTTCTAAGAAATAAAAAATTAAAAAAAAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAACAATAACTGTGTTCTAAGAAATAAAAAATTAAAAAAAAGAA  400

seq1  CTCCCAGTCAAGAAACAAATACCTGAATGAAATAAGAAAGACAACACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTCAAGAAACAAATACCTGAATGAAATAAGAAAGACAACACAAA  450

seq1  ATATAAAGGAGGAATTTAACAAAGAAATGCTGAAGAAAAACCAGGCACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGAGGAATTTAACAAAGAAATGCTGAAGAAAAACCAGGCACAG  500

seq1  TTGGCAATGAGAACACAAGTCAAGCAGTCAACCCAAAGGCTTCGGGAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATGAGAACACAAGTCAAGCAGTCAACCCAAAGGCTTCGGGAAGT  550

seq1  CTCAGTAATTGAATGATTGCAGAGGCACAGAGCTGACAGGCGGTGGTGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAATTGAATGATTGCAGAGGCACAGAGCTGACAGGCGGTGGTGGC  600

seq1  GCACGCTTTTAATCCAGGCACTTGGGAGGCAGAGGCAGATGGGTGTCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTTTTAATCCAGGCACTTGGGAGGCAGAGGCAGATGGGTGTCTGA  650

seq1  GTTCAAGGCCAGCCTGGTGTACAGACCGAGGTCCAGGACAGCCAGACAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTGGTGTACAGACCGAGGTCCAGGACAGCCAGACAAT  700

seq1  TTAAAGGAACAATCCAGCAATATGGCACCAGTGGGAATTC  738
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAACAATCCAGCAATATGGCACCAGTGGGAATTC  740