BAC Information

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BAC

Clone NameB6Ng01-308M05
Chromosome1 (Build37)
Map Location 99,284,800 - 99,285,875
singlet/doubletsinglet
Overlap geneEG634346
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308M05.bB6Ng01-308M05.g
ACCGA101181GA101182
length1,0771,157
definitionB6Ng01-308M05.b B6Ng01-308M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatgttaaatccagccactgaaagtcagaaagtctaatatcaa
atattttttcttccataagtagaatatatatataaaatattcatgtatct
acacatgcttgtaagtagtatgtgtgtatatatgtgtgcattgtgcaggt
gtattgtgggtgtgacaactagagaagtgatggagtgagggtctgaagag
agcataagggaagtggtatagatagcagtgacatacagataatacatgag
cagaatgtgagacatacagggagaggaatcaatgggggtgggtggtcatg
acatgtgggagagcaatagagaaaggaacaaataagaaaataatatgctg
atatatactcttcataactgaaaaaacagttatgaaatcaaatactactt
tatatgctaaccaaaagtgtttaaagtgtttaacaactttagcaatcaga
gaagtgctaatacaagctgttttgaaattcaatctctcaccactcagaat
atctgtcatcaaaatgtgccaatgagacatcattcaggaaaagtgaaacc
atcattactcttactacactgttcacaacaaccatggtttaaagcctgcc
taaaaatacaacaacaaattactggataaggaaattgttgcctagggcac
ttcactcatatgtaacgaatactcataatatttgcaggaaacaggctatg
atggcaggaacatggaggatatgaaggggcaaaagtaagatcatgtcaag
gcagaatgtatagtgatgtgtatacaagtatgaaaatatcataacatcta
ttaatgttaatgatattacattattactatgtattcttacacaaacttct
aatttggtcccatacaatactttgtgattatttttaaaaaacagccttag
tccttggtgatctgacaggatgcaagggattatttcagtctttttgtatc
ttttgaggcctgtttatcaccagttatatggtcagtttgggataaggtac
ccatgaaggtgctgagaatggtaccatgaagtgctgagaagaaggtatgc
tcttagtggtcagatgaaatgtcctat

gaattctcacctgaggaataccgaatggcagagaagcagctgaaaaaatg
ttcaacatccttaatcatcagggaaatgtaaatcaaaacaaccctgatat
tccaactcaaaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaggcttttacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggaaccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaagtaacacattcacaaa
ggatctcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtatggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaatttggagctgagatgaa
aggatggaccatgtagagactgccataaatggatccaccccataatcagc
atccaaatgctgacaccattgcatatactagcaacattttatcgaaagga
cctagatgtagctgtctcttgtgagactatgccggggcctagcaaacaca
gaagtggatgctcacagtcagctaatggatggatcacagggctcccaatg
gaggagctagagaaagtacccaggagctaaagggatctgcacctatagtg
acacatatgactaaccagtactctgagctctgactctagctgcatatgta
tcaaaggatgactagtcgtcatcactgaaaagagagaccaatgacatgca
actaatgccagttacaggcaatgcaagcctaaaaaggcatttgctctgtc
tatgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99284800_99285875
seq2: B6Ng01-308M05.b_47_1123

seq1  GAATTCTTATGTTAAATCCAGCCACTGAAAGTCAGAAAGTCTAATATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTTAAATCCAGCCACTGAAAGTCAGAAAGTCTAATATCAA  50

seq1  ATATTTTTTCTTCCATAAGTAGAATATATATATAAAATATTCATGTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTCTTCCATAAGTAGAATATATATATAAAATATTCATGTATCT  100

seq1  ACACATGCTTGTAAGTAGTATGTGTGTATATATGTGTGCATTGTGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTTGTAAGTAGTATGTGTGTATATATGTGTGCATTGTGCAGGT  150

seq1  GTATTGTGGGTGTGACAACTAGAGAAGTGATGGAGTGAGGGTCTGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGGGTGTGACAACTAGAGAAGTGATGGAGTGAGGGTCTGAAGAG  200

seq1  AGCATAAGGGAAGTGGTATAGATAGCAGTGACATACAGATAATACATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGGGAAGTGGTATAGATAGCAGTGACATACAGATAATACATGAG  250

seq1  CAGAATGTGAGACATACAGGGAGAGGAATCAATGGGGGTGGGTGGTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGAGACATACAGGGAGAGGAATCAATGGGGGTGGGTGGTCATG  300

seq1  ACATGTGGGAGAGCAATAGAGAAAGGAACAAATAAGAAAATAATATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGGAGAGCAATAGAGAAAGGAACAAATAAGAAAATAATATGCTG  350

seq1  ATATATACTCTTCATAACTGAAAAAACAGTTATGAAATCAAATACTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTCTTCATAACTGAAAAAACAGTTATGAAATCAAATACTACTT  400

seq1  TATATGCTAACCAAAAGTGTTTAAAGTGTTTAACAACTTTAGCAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTAACCAAAAGTGTTTAAAGTGTTTAACAACTTTAGCAATCAGA  450

seq1  GAAGTGCTAATACAAGCTGTTTTGAAATTCAATCTCTCACCACTCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTAATACAAGCTGTTTTGAAATTCAATCTCTCACCACTCAGAAT  500

seq1  ATCTGTCATCAAAATGTGCCAATGAGACATCATTCAGGAAAAGTGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCATCAAAATGTGCCAATGAGACATCATTCAGGAAAAGTGAAACC  550

seq1  ATCATTACTCTTACTACACTGTTCACAACAACCATGGTTTAAAGCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACTCTTACTACACTGTTCACAACAACCATGGTTTAAAGCCTGCC  600

seq1  TAAAAATACAACAACAAATTACTGGATAAGGAAATTGTTGCCTAGGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACAACAACAAATTACTGGATAAGGAAATTGTTGCCTAGGGCAC  650

seq1  TTCACTCATATGTAACGAATACTCATAATATTTGCAGGAAACAGGCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCATATGTAACGAATACTCATAATATTTGCAGGAAACAGGCTATG  700

seq1  ATGGCAGGAACATGGAGGATATGAAGGGGCAAAAGTAAGATCATGTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGAACATGGAGGATATGAAGGGGCAAAAGTAAGATCATGTCAAG  750

seq1  GCAGAATGTATAGTGATGTGTATACAAGTATGAAAATATCATAACATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTATAGTGATGTGTATACAAGTATGAAAATATCATAACATCTA  800

seq1  TTAATGTTAATGATATTACATTATTACTATGTATTCTTACACAAACTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTAATGATATTACATTATTACTATGTATTCTTACACAAACTTCT  850

seq1  AATTTGGTCCCATACAATACTTTGTGATTATTTTTAAAAAACAGCCTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTCCCATACAATACTTTGTGATTATTTTTAAAAAACAGCCTTAG  900

seq1  TCCTTGGTGATCTGACAGGATGCAGGGGATTATTTCAGTCTTTTTGTATC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCTTGGTGATCTGACAGGATGCAAGGGATTATTTCAGTCTTTTTGTATC  950

seq1  TTTTGAGGCCTGTTTTATCACCAGTTATATGGTCAGTTTTGGATAAGGTA  1000
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TTTTGAGGCCTG-TTTATCACCAGTTATATGGTCAGTTTGGGATAAGGTA  999

seq1  -CCATG-AGGTGCTGAG-ATGGTACCATGAGGTGCTGAGAAGAAGGTATG  1047
       ||||| |||||||||| |||||||||||| |||||||||||||||||||
seq2  CCCATGAAGGTGCTGAGAATGGTACCATGAAGTGCTGAGAAGAAGGTATG  1049

seq1  TTCTTTTGTGTTAGGATGAAATGTCCTAT  1076
       || || ||| |  |||||||||||||||
seq2  CTC-TTAGTGGTCAGATGAAATGTCCTAT  1077


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