BAC Information

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BAC

Clone NameB6Ng01-309C06
Chromosome1 (Build37)3 (Build37)
Map Location 105,001,690 - 105,002,86135,157,396 - 35,157,486
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C06.bB6Ng01-309C06.g
ACCGA101456GA101457
length1,175964
definitionB6Ng01-309C06.b B6Ng01-309C06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,001,690 - 105,002,861)(35,157,396 - 35,157,486)
sequence
gaattcaattccaatattttaaatctttgtttgcatttggaaaaaaagcc
ttgtattatgtacccagtttggcctcagactcccaatccttctgcttcaa
cttccagaggagaatgcatcaaataacgtaagtggcatctgaaagtcatg
ctcacttttttcaaagggagttgaagggatagttcaagacacattcttac
tgctgattcagtactgaaagcatctggattgtcattgcaacttagatttc
ttccacttgcaacacagttaacctcagagctgttacttctcagaggagag
tgctgagcaggaacaaaagaagtgtctgcatgaaggattctgcaactctg
tgctagcagcctatcaggagggtgaggaaagagtcacaaggtgttgctgg
ataatacttactgtttcttccatggcggtgtctcttatgataatgctgcc
tttgctgactattctaggtagcatgatttttgagtagcttcctgttcttt
tctaaatgcaattcgttaggggcaagataatcctggtgctgttttggggg
gtccaagtaattaccagaaagttgcactggctaagtttgattatattttc
cctcagaacttttccagttcatgcccaggcattagtgtgttcaccagtag
ataagccacaatttgtcagtcaggcaagcagtttccttccaagctcatct
aactctcacaagaaagaatattggaagagataatggattcattgaaaagt
agtattgaagcacacagcaaatttcttttctttgttctttcactatcctg
agatatggatctcagcagaggctgtgtaagtttggtgtcagctttggtaa
aactatgtaacagatcaagcttatcaaaatctcatctctcctctcatttt
tatttcagctcttaattgtctttactaggcaggtggatcggggaaagtta
caagttgttcaagcactggtcctgatttctcacccccataggtggggaaa
aacatattagcagtttgaaagggattcttgaaacaggatggcaggagcag
gaagagaaaaaggaggaggtagaatcatttcatactaaagggagttattt
ctgatcccaggccttgcctgacaaattgaccacaaaccattgactgttta
atggcaatcctttgaaatggtttgg
gaattccaggacagccaaggctatacagagaaagtctgtctcaaaaaaaa
actaaaaccaaaccaaaacaaacaaacaaaaaatcaaacaaaaagttaga
ctccagagaatgaaatatcctgattaaaaacttgggtacagagcttaaaa
aaaaaaaaaaatgaattctcaactgaggaataccaaatggctgaaaagca
cctaaagaaatgttcaacatccttagtcattagggaaatgcaaatcaaaa
caaccctgagattccatctcacaccagtcagaatagttaagattaaaaaa
ataaaaaccctcaggtgacaacagatacttgtcaggatgtggagaaagag
gaacactatttcattgctagtgggactgcaagctggtacaaccactctgg
aaatcagtttggcagttcctcagaaaattggacatagttctaccagaaga
tctagcaatagcactactgggcataaacccagaagactccccaacttgta
ataaggacacatgtttcaatatgttcataacatctttatttgtaatagcc
agaagctgaaaagaacccaaatgtctctcaacagaggaatggatacattt
tcacaatgtggtacatttatacaatgaattcctactcagctattataaat
gatgagttcatgacgttcttatgcaaaaggatggaattagaaaacattat
cttgagagagctaacccaatcacaaataagcacacagagcatgcactcac
tgataagtagatattagaccagcagttcagaatacactagatacaattca
cagaccacatgaagcacaagaagaaggaggaccatttcagtcctttgaag
tgggatcaaaatacccatgggaggatattccaagacaaagtttggagcag
acagtgaaaggaaaggtcatctagtgactgttccatctggggatccatcc
catatacagatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105001690_105002861
seq2: B6Ng01-309C06.b_46_1220 (reverse)

seq1  CCAAAC---ATCAAA-GATTG-CAATAAACAGCCATGGGTTTGTGGTCAA  45
      ||||||    ||||| ||||| || ||||||| ||  |||||||||||||
seq2  CCAAACCATTTCAAAGGATTGCCATTAAACAGTCAATGGTTTGTGGTCAA  50

seq1  TTTGTCA-GCAA-GCCTGGGATCAGAAATTACTTCCTTTAGTATGGAAAA  93
      ||||||| |||| |||||||||||||||| ||| |||||||||||  |||
seq2  TTTGTCAGGCAAGGCCTGGGATCAGAAATAACTCCCTTTAGTATG--AAA  98

seq1  TGGTTTCTACCTCCTTCCTTTTTCTCTCCCTGCTCCTGCCATCCTGTTTC  143
      | | |||||||||| |||||||||||| ||||||||||||||||||||||
seq2  T-GATTCTACCTCC-TCCTTTTTCTCTTCCTGCTCCTGCCATCCTGTTTC  146

seq1  AAGAATCCCTTTCAAACCTGCTAATATGTTTTTCCCCACCTATGGGGGTG  193
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAATCCCTTTCAAA-CTGCTAATATGTTTTTCCCCACCTATGGGGGTG  195

seq1  AGAAATCAGGACCAGTGCTTGAACAACTTGTAACTTT-CCCGATCCACCT  242
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAATCAGGACCAGTGCTTGAACAACTTGTAACTTTCCCCGATCCACCT  245

seq1  GCCTAGTAAAGACAATTAAGAGCTGAAATAAAAATGAGAGGAGAGATGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTAAAGACAATTAAGAGCTGAAATAAAAATGAGAGGAGAGATGAG  295

seq1  ATTTTGATAAGCTTGATCTGTTACATAGTTTTACCAAAGCTGACACCAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAAGCTTGATCTGTTACATAGTTTTACCAAAGCTGACACCAAA  345

seq1  CTTACACAGCCTCTGCTGAGATCCATATCTCAGGATAGTGAAAGAACAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGCCTCTGCTGAGATCCATATCTCAGGATAGTGAAAGAACAAA  395

seq1  GAAAAGAAATTTGCTGTGTGCTTCAATACTACTTTTCAATGAATCCATTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATTTGCTGTGTGCTTCAATACTACTTTTCAATGAATCCATTA  445

seq1  TCTCTTCCAATATTCTTTCTTGTGAGAGTTAGATGAGCTTGGAAGGAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAATATTCTTTCTTGTGAGAGTTAGATGAGCTTGGAAGGAAAC  495

seq1  TGCTTGCCTGACTGACAAATTGTGGCTTATCTACTGGTGAACACACTAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTGACTGACAAATTGTGGCTTATCTACTGGTGAACACACTAAT  545

seq1  GCCTGGGCATGAACTGGAAAAGTTCTGAGGGAAAATATAATCAAACTTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCATGAACTGGAAAAGTTCTGAGGGAAAATATAATCAAACTTAG  595

seq1  CCAGTGCAACTTTCTGGTAATTACTTGGACCCCCCAAAACAGCACCAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCAACTTTCTGGTAATTACTTGGACCCCCCAAAACAGCACCAGGA  645

seq1  TTATCTTGCCCCTAACGAATTGCATTTAGAAAAGAACAGGAAGCTACTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGCCCCTAACGAATTGCATTTAGAAAAGAACAGGAAGCTACTCA  695

seq1  AAAATCATGCTACCTAGAATAGTCAGCAAAGGCAGCATTATCATAAGAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGCTACCTAGAATAGTCAGCAAAGGCAGCATTATCATAAGAGA  745

seq1  CACCGCCATGGAAGAAACAGTAAGTATTATCCAGCAACACCTTGTGACTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCATGGAAGAAACAGTAAGTATTATCCAGCAACACCTTGTGACTC  795

seq1  TTTCCTCACCCTCCTGATAGGCTGCTAGCACAGAGTTGCAGAATCCTTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCACCCTCCTGATAGGCTGCTAGCACAGAGTTGCAGAATCCTTCA  845

seq1  TGCAGACACTTCTTTTGTTCCTGCTCAGCACTCTCCTCTGAGAAGTAACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACACTTCTTTTGTTCCTGCTCAGCACTCTCCTCTGAGAAGTAACA  895

seq1  GCTCTGAGGTTAACTGTGTTGCAAGTGGAAGAAATCTAAGTTGCAATGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGGTTAACTGTGTTGCAAGTGGAAGAAATCTAAGTTGCAATGAC  945

seq1  AATCCAGATGCTTTCAGTACTGAATCAGCAGTAAGAATGTGTCTTGAACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGATGCTTTCAGTACTGAATCAGCAGTAAGAATGTGTCTTGAACT  995

seq1  ATCCCTTCAACTCCCTTTGAAAAAAGTGAGCATGACTTTCAGATGCCACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCAACTCCCTTTGAAAAAAGTGAGCATGACTTTCAGATGCCACT  1045

seq1  TACGTTATTTGATGCATTCTCCTCTGGAAGTTGAAGCAGAAGGATTGGGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTATTTGATGCATTCTCCTCTGGAAGTTGAAGCAGAAGGATTGGGA  1095

seq1  GTCTGAGGCCAAACTGGGTACATAATACAAGGCTTTTTTTCCAAATGCAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGCCAAACTGGGTACATAATACAAGGCTTTTTTTCCAAATGCAA  1145

seq1  ACAAAGATTTAAAATATTGGAATTGAATTC  1172
      ||||||||||||||||||||||||||||||
seq2  ACAAAGATTTAAAATATTGGAATTGAATTC  1175

seq1: chr3_35157396_35157486
seq2: B6Ng01-309C06.g_68_150

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAA  50
      |||||||||||||| |||||||||||||||  ||||||| ||||   |||
seq2  TTCCAGGACAGCCAAGGCTATACAGAGAAAGTCTGTCTCAAAAA---AAA  47

seq1  ACCAAAACCAAACCAAAACAAACAAACAAACAAAAAAATCA  91
      || ||||||||||||||||||||||||     |||||||||
seq2  ACTAAAACCAAACCAAAACAAACAAAC-----AAAAAATCA  83