BAC Information

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BAC

Clone NameB6Ng01-309I16
Chromosome1 (Build37)
Map Location 26,332,169 - 26,333,289
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309I16.bB6Ng01-309I16.g
ACCGA101757GA101758
length1,1781,123
definitionB6Ng01-309I16.b B6Ng01-309I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccagagaagcccaagacaagctgaacaaagaagcaagtaggcca
gaaaagcagactgataagcttcagatctcctctctctctcttctctccaa
atccaaaccctagatacatcgtcagctctggggcagactacctgctatag
catctcctcacaaattattcccatttccagggtactaaatccattaccct
aagtgtcattgcctaatgcccaaaaacacattttacccagaacttctagt
atcacacctggcagaattggagattttcctaccaaaaagaaacactgcct
acaccctcctatgaaacagaggaaaaacagaaaccacaaaagaaaatacc
caccaaacaagacaagaatagatataagcacctggaacaatcatcaacct
aaacacagatgcctagacaccattataagagcaaaatcaacaacagccat
gacaatatgtctccactaaatccaacaacagtactaaagtagtctccaag
aaattaaacatagctgaagcacaagaaaaaaaaaaaacataaaatagctt
ttacaaatgtcatggagatccttaaaaagaaaatgaataaattgcttttt
aaaaaaatctatgaaattaagaaagtacaagcagtggaagagaatgaata
gaacagttcaatatgttaaaataaaattagaatcaatataaaaatgcaaa
ggaaaggtaaactagtaatgaaaaatataggaacaggaaatctagaggca
agccttgccaacagaatggaaaaagatgcaagaaagaatctcacaagatt
taaaaataaaatggatacactatgaaaagaccaaagctaagaataaaaga
aatataggaaaaggaagggaacacagatcaaaaccacagaaaatattttc
aacaaatcaaagaagaaaattttactaacctaaagaaaaaggaacctatt
aaagtataagaagcatacagaactccaacagactgaacaagaacagaaaa
ttctgcacagcaaacatatcaaacccttaaatacagaacaaagaaatata
ataaaagctggagggaaacagacaatatataaattccagattattagaat
aatactggcattcctcatgagtcttaaccgatggcctggcatagatgtgc
cccagaacctctgaagagaaaccggaag

gaattctatggttgtaacgatgttgggggaatgattgtttaataaactgc
tatcagaaacacagaataaacaaagttattaaaaccaagttattaaaaaa
ttaaatatggctaaatcctttgaatttttgtattgattaaatcaacaata
tgacagatattatattatagaaaatataggttgacataataaagacctat
ggtacattgattatatttaaaggtatagcaaatgtgctataaaattgtaa
tatgtaattttaaaaattagagttctatatatattttacctatggatata
accaagttcatatttttttatccttttaaagtgaagcatttttggtagtt
tagaacttttttgctttgttctacaacaggcttaaaataatatttaaata
atcaaaatctatagtgaatatatcattttaaaatatgtatatgcaataag
tttgtaagatatagggacttttttctttttaaaaaaatttattattagat
gttttcttcattcacatttcaaatattatccccttttcaagtttcctctc
tgaaaattccctataccctccctccttcccctactccccaatccatccac
tcctacttcctggccctgatagtcctctggtattgcgaagattctaggcc
attttttcaagagtgggcaaaatgttttagaattagaagaatctttagtt
acttattccctcaatatcaaataggagctgtaggtatctgacattaagag
aaatgattccataagagacatcaaatgtaggaagtagaattagctattat
atagtaccaacagaattattgatttgtcttattttaatatctagaacaga
catatccaaatggttgaagaaaaaattggcaagagtcactagtgattaaa
taataattgcaccagttgctttgagatatgtagatttaggtacgagattc
ttacgtagtggctttcacagaggtacaaaaatatcgcagcttgagctgtg
tggtgtaactatgtcttctggtatagctaggtgtttatgtgctatcttct
gagggaatcctccaggctgctggcagtggtgctccttcactccgaatttc
tttaatggtgaactttgatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26332169_26333289
seq2: B6Ng01-309I16.g_65_1187

seq1  GAATTCTATGGTTGTAACGATGTTGGGGGAATGATTGTTTAATAAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGTTGTAACGATGTTGGGGGAATGATTGTTTAATAAACTGC  50

seq1  TATCAGAAACACAGAATAAACAAAGTTATTAAAACCAAGTTATTAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAACACAGAATAAACAAAGTTATTAAAACCAAGTTATTAAAAAA  100

seq1  TTAAATATGGCTAAATCCTTTGAATTTTTGTATTGATTAAATCAACAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGGCTAAATCCTTTGAATTTTTGTATTGATTAAATCAACAATA  150

seq1  TGACAGATATTATATTATAGAAAATATAGGTTGACATAATAAAGACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATATTATATTATAGAAAATATAGGTTGACATAATAAAGACCTAT  200

seq1  GGTACATTGATTATATTTAAAGGTATAGCAAATGTGCTATAAAATTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTGATTATATTTAAAGGTATAGCAAATGTGCTATAAAATTGTAA  250

seq1  TATGTAATTTTAAAAATTAGAGTTCTATATATATTTTACCTATGGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTTTAAAAATTAGAGTTCTATATATATTTTACCTATGGATATA  300

seq1  ACCAAGTTCATATTTTTTTATCCTTTTAAAGTGAAGCATTTTTGGTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTCATATTTTTTTATCCTTTTAAAGTGAAGCATTTTTGGTAGTT  350

seq1  TAGAACTTTTTTGCTTTGTTCTACAACAGGCTTAAAATAATATTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTTTTTGCTTTGTTCTACAACAGGCTTAAAATAATATTTAAATA  400

seq1  ATCAAAATCTATAGTGAATATATCATTTTAAAATATGTATATGCAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTATAGTGAATATATCATTTTAAAATATGTATATGCAATAAG  450

seq1  TTTGTAAGATATAGGGACTTTTTTCTTTTTAAAAAAATTTATTATTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGATATAGGGACTTTTTTCTTTTTAAAAAAATTTATTATTAGAT  500

seq1  GTTTTCTTCATTCACATTTCAAATATTATCCCCTTTTCAAGTTTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCATTCACATTTCAAATATTATCCCCTTTTCAAGTTTCCTCTC  550

seq1  TGAAAATTCCCTATACCCTCCCTCCTTCCCCTACTCCCCAATCCATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTCCCTATACCCTCCCTCCTTCCCCTACTCCCCAATCCATCCAC  600

seq1  TCCTACTTCCTGGCCCTGATAGTCCTCTGGTATTGCGAAGATTCTAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTCCTGGCCCTGATAGTCCTCTGGTATTGCGAAGATTCTAGGCC  650

seq1  ATTTTTTCAAGAGTGGGCAAAATGTTTTAGAATTAGAAGAATCTTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAGAGTGGGCAAAATGTTTTAGAATTAGAAGAATCTTTAGTT  700

seq1  ACTTATTCCCTCAATATCAAATAGGAGCTGTAGGTATCTGACATTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCCCTCAATATCAAATAGGAGCTGTAGGTATCTGACATTAAGAG  750

seq1  AAATGATTCCATAAGAGACATCAAATGTAGGAAGTAGAATTAGCTATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCCATAAGAGACATCAAATGTAGGAAGTAGAATTAGCTATTAT  800

seq1  ATAGTACCAACAGAATTATTGATTTGTCTTATTTTAATATCTAGAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCAACAGAATTATTGATTTGTCTTATTTTAATATCTAGAACAGA  850

seq1  CATATCCAAATGGTTGAAGAAAAAATTGGCAAGAGTCACTAGTGATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAAATGGTTGAAGAAAAAATTGGCAAGAGTCACTAGTGATTAAA  900

seq1  TAATAATTGCACCAGTTGCTTTGAGATATGTAGATTTAGGTACGAGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGCACCAGTTGCTTTGAGATATGTAGATTTAGGTACGAGATTC  950

seq1  TTACGTAGTGGCTTTCACAGAGGTAC-AAAATATCGCAGCTTGAGCTGTG  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTACGTAGTGGCTTTCACAGAGGTACAAAAATATCGCAGCTTGAGCTGTG  1000

seq1  TTGGTTGTTAACTATGTCTTCCTGGTATAGCTAGGTGTTTATGTTGGCTA  1049
       ||||   |||||||||||| |||||||||||||||||||||||  ||||
seq2  -TGGT--GTAACTATGTCTT-CTGGTATAGCTAGGTGTTTATGT--GCTA  1044

seq1  TCTTCTGAGGG-ATCCTCCAGGGCTGCTGAGCAGT-GTGCTC--TCACTC  1095
      ||||||||||| |||||||| |||||||| ||||| ||||||  ||||||
seq2  TCTTCTGAGGGAATCCTCCA-GGCTGCTG-GCAGTGGTGCTCCTTCACTC  1092

seq1  --GATTTCTTTA--TGTG-ACTTTGATTTGT  1121
         |||||||||   ||| ||||||||||||
seq2  CGAATTTCTTTAATGGTGAACTTTGATTTGT  1123


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