BAC Information

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BAC

Clone NameB6Ng01-309O12
Chromosome1 (Build37)
Map Location 69,333,891 - 69,513,457
singlet/doubletdoublet
Overlap geneEG241084
Upstream geneErbb4, LOC667842
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309O12.bB6Ng01-309O12.g
ACCGA102030GA102031
length1,1531,071
definitionB6Ng01-309O12.b B6Ng01-309O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,512,307 - 69,513,457)(69,333,891 - 69,334,974)
sequence
gaattctctacctgcagggatatgaaccttttggacctgcactaacctgt
ttgctcactggctcatggtttttgtgggaggtatttttctggtatgaggt
tataaaacttgacttaaaggctaccatagatgtttacacagagtgtgtgc
tcgttaaacaggacaatatggagccaggagcataaacattaggaaactca
gcagaagcagaaagcctgaggccaaggctaggtctcctttgcataacatt
tttcagtggagcctttctaaaggctgcaagcatcagagatttgaaccttg
cttgctactctagatcccagaatggaacactttgtttaaaactttaaaca
tacaaatacatagattggacattgatctatctgcctttatacttttgctc
caaaccttgaaaatactgggccaggtctcctaaattaatggctgaaaaaa
actaatgtaaggagacaaggggagtaaagaggaggtttgaagtggaggga
accctcaaaaaagaagcatggaagtaagtttaccgaagaattggaagatt
tgatgtcagtgtctaagatggtaaacttggtccagcctgggacgttgcta
taaggataaccaatgatgtcagggtagtttcaagattggtcgatgacagc
agtctcttcttacaggaactcactctggcctgagtagagattccctgttc
tgttttacctcccgaccccccatcaaagtagttaaaactttcccccaagt
atgctaatgggagctaatgactgacctgcagggaatgtctcaagcacctc
agagacttataatgtcttgtaattatgtgtttcctaccagggtcaggata
tgattggcttgaaatcagccaatgggcatgttagatatactgggaggtta
gaattattctctccctggaaccttcattagatatcaccatagcatttcct
atagcattactgtaattgtctcctttggcaatacagcttgatatctactt
gacatcatgctggtcacgtctattaatgataaaccaatctctagattttc
cagaaaattgtgtataatgatcagaatctagccacttctcaatgctgttc
atctacttacccgacaaaacaggtactattaggaatttccactattgtcc
caa

gaattctttactttaggaactcaggccttctcattcagttgtaagttact
tcctaaagtctgttctccttcaataaaaaggaactcaaaacaagggaccc
aaaggctgttccagttttgacacgggaaaaattaggcagatggaaaaatt
gagacagtatagtcatattttgaagacaagatgttatcacccacataggc
atttgtttttttggagacacttggcttaaaattggtctctgaagtcacgg
gttgtggaccaaagacgtgcaaggtcacccgctgaatttggcaagtgagg
gtacaatatgccttagctcaggagacttcactagtgcttccttgttttct
ttaatgatttaaaggaacaggtttataatcaatgtatatttgtatatttg
tggacttgtgattaagtgttatattttatggctgacttttatttctttgc
cttacttcatttttttttttttgtttattggtgttttccaaaaatttcaa
gagtgcttgaatataaaagtatttaaatccaagtagaccagggaattgta
atcagctctaaagagaaacaaaaaatcttcccagaactttctcctcggaa
tgctaccagaaaagaaaggtaagcatgaaccctgctgtaaacccttctgt
cttacagtggtgacctgactggataatatgccagtggaatcatggcacaa
aaattgtgggaataaccaagcattatctgtttgattttaaagcccactcc
atgagatggagcccatgcctaacactgcttcggtggtgaagaagaacctg
ggactagattggcagggggacagaggaaatgaaaaccaattctattgtct
gttaaaaaaaaaaaaaacatgtaacaatataatgactcctaaggacattc
tgctatgcccatatcttgctcagccaccatcaaagaagcttccactgtac
atgggaacaaattcagagacatacaaatgagcatgttcagagagtaggac
atcttagctcctagtctaaatgggatgtctcatcaaatctctaaccctag
ctcagaacctcctgaaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69512307_69513457
seq2: B6Ng01-309O12.b_49_1201 (reverse)

seq1  TTGGGACAATAGTG--AATTTCT-ATAGTA-CTGTTTTGTTGGGTAGGTA  46
      ||||||||||||||  |||| || |||||| ||||||||| ||||| || 
seq2  TTGGGACAATAGTGGAAATTCCTAATAGTACCTGTTTTGTCGGGTAAGT-  49

seq1  AGATG-ACAGCATTGAG-AGTGGCTAGATTCTGATCATTATACACATTTT  94
      ||||| ||||||||||| |||||||||||||||||||||||||||| |||
seq2  AGATGAACAGCATTGAGAAGTGGCTAGATTCTGATCATTATACACAATTT  99

seq1  TCTGGAAAAATCTTAGGAGATGGGTTTATTCATTAATAGACGTGACCAGC  144
      ||||| |||||||   ||||| |||||| |||||||||||||||||||||
seq2  TCTGG-AAAATCT--AGAGATTGGTTTA-TCATTAATAGACGTGACCAGC  145

seq1  ATGATGTCAAGTAGATATCAAGCTGTATTGCC-AAGGAGACAATTACAGT  193
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGATGTCAAGTAGATATCAAGCTGTATTGCCAAAGGAGACAATTACAGT  195

seq1  AATGCTATAGGAAATGCTATGGTGATATCTAATGAAGGTTCCAGGGAGAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATAGGAAATGCTATGGTGATATCTAATGAAGGTTCCAGGGAGAG  245

seq1  AATAATTCTAACCTCCCAGTATATCTAACATGCCCATTGGCTGATTTCAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTAACCTCCCAGTATATCTAACATGCCCATTGGCTGATTTCAA  295

seq1  GCCAATCATATCCTGACCCTGGTAGGAAACACATAATTACAAGACATTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCATATCCTGACCCTGGTAGGAAACACATAATTACAAGACATTAT  345

seq1  AAGTCTCTGAGGTGCTTGAGACATTCCCTGCAGGTCAGTCATTAGCTCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGAGGTGCTTGAGACATTCCCTGCAGGTCAGTCATTAGCTCCC  395

seq1  ATTAGCATACTTGGGGGAAAGTTTTAACTACTTTGATGGGGGGTCGGGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATACTTGGGGGAAAGTTTTAACTACTTTGATGGGGGGTCGGGAG  445

seq1  GTAAAACAGAACAGGGAATCTCTACTCAGGCCAGAGTGAGTTCCTGTAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAGAACAGGGAATCTCTACTCAGGCCAGAGTGAGTTCCTGTAAG  495

seq1  AAGAGACTGCTGTCATCGACCAATCTTGAAACTACCCTGACATCATTGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTGCTGTCATCGACCAATCTTGAAACTACCCTGACATCATTGGT  545

seq1  TATCCTTATAGCAACGTCCCAGGCTGGACCAAGTTTACCATCTTAGACAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTATAGCAACGTCCCAGGCTGGACCAAGTTTACCATCTTAGACAC  595

seq1  TGACATCAAATCTTCCAATTCTTCGGTAAACTTACTTCCATGCTTCTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAAATCTTCCAATTCTTCGGTAAACTTACTTCCATGCTTCTTTT  645

seq1  TTGAGGGTTCCCTCCACTTCAAACCTCCTCTTTACTCCCCTTGTCTCCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTCCCTCCACTTCAAACCTCCTCTTTACTCCCCTTGTCTCCTT  695

seq1  ACATTAGTTTTTTTCAGCCATTAATTTAGGAGACCTGGCCCAGTATTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTTTTTTTCAGCCATTAATTTAGGAGACCTGGCCCAGTATTTTC  745

seq1  AAGGTTTGGAGCAAAAGTATAAAGGCAGATAGATCAATGTCCAATCTATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGGAGCAAAAGTATAAAGGCAGATAGATCAATGTCCAATCTATG  795

seq1  TATTTGTATGTTTAAAGTTTTAAACAAAGTGTTCCATTCTGGGATCTAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATGTTTAAAGTTTTAAACAAAGTGTTCCATTCTGGGATCTAGA  845

seq1  GTAGCAAGCAAGGTTCAAATCTCTGATGCTTGCAGCCTTTAGAAAGGCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGCAAGGTTCAAATCTCTGATGCTTGCAGCCTTTAGAAAGGCTC  895

seq1  CACTGAAAAATGTTATGCAAAGGAGACCTAGCCTTGGCCTCAGGCTTTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAAATGTTATGCAAAGGAGACCTAGCCTTGGCCTCAGGCTTTCT  945

seq1  GCTTCTGCTGAGTTTCCTAATGTTTATGCTCCTGGCTCCATATTGTCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCTGAGTTTCCTAATGTTTATGCTCCTGGCTCCATATTGTCCTG  995

seq1  TTTAACGAGCACACACTCTGTGTAAACATCTATGGTAGCCTTTAAGTCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACGAGCACACACTCTGTGTAAACATCTATGGTAGCCTTTAAGTCAA  1045

seq1  GTTTTATAACCTCATACCAGAAAAATACCTCCCACAAAAACCATGAGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAACCTCATACCAGAAAAATACCTCCCACAAAAACCATGAGCCA  1095

seq1  GTGAGCAAACAGGTTAGTGCAGGTCCAAAAGGTTCATATCCCTGCAGGTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAACAGGTTAGTGCAGGTCCAAAAGGTTCATATCCCTGCAGGTA  1145

seq1  GAGAATTC  1151
      ||||||||
seq2  GAGAATTC  1153


seq1: chr1_69333891_69334974
seq2: B6Ng01-309O12.g_70_1140

seq1  GAATTCTTTACTTTAGGAACTCAGGCCTTCTCATTCAGTTGTAAGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTTAGGAACTCAGGCCTTCTCATTCAGTTGTAAGTTACT  50

seq1  TCCTAAAGTCTGTTCTCCTTCAATAAAAAGGAACTCAAAACAAGGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGTCTGTTCTCCTTCAATAAAAAGGAACTCAAAACAAGGGACCC  100

seq1  AAAGGCTGTTCCAGTTTTGACACGGGAAAAATTAGGCAGATGGAAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTTCCAGTTTTGACACGGGAAAAATTAGGCAGATGGAAAAATT  150

seq1  GAGACAGTATAGTCATATTTTGAAGACAAGATGTTATCACCCACATAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTATAGTCATATTTTGAAGACAAGATGTTATCACCCACATAGGC  200

seq1  ATTTGTTTTTTTGGAGACACTTGGCTTAAAATTGGTCTCTGAAGTCACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTTTGGAGACACTTGGCTTAAAATTGGTCTCTGAAGTCACGG  250

seq1  GTTGTGGACCAAAGACGTGCAAGGTCACCCGCTGAATTTGGCAAGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGACCAAAGACGTGCAAGGTCACCCGCTGAATTTGGCAAGTGAGG  300

seq1  GTACAATATGCCTTAGCTCAGGAGACTTCACTAGTGCTTCCTTGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATATGCCTTAGCTCAGGAGACTTCACTAGTGCTTCCTTGTTTTCT  350

seq1  TTAATGATTTAAAGGAACAGGTTTATAATCAATGTATATTTGTATATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTTAAAGGAACAGGTTTATAATCAATGTATATTTGTATATTTG  400

seq1  TGGACTTGTGATTAAGTGTTATATTTTATGGCTGACTTTTATTTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGTGATTAAGTGTTATATTTTATGGCTGACTTTTATTTCTTTGC  450

seq1  CTTACTTCATTTTTTTTTTTTTGTTTATTGGTGTTTTCCAAAAATTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCATTTTTTTTTTTTTGTTTATTGGTGTTTTCCAAAAATTTCAA  500

seq1  GAGTGCTTGAATATAAAAGTATTTAAATCCAAGTAGACCAGGGAATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTGAATATAAAAGTATTTAAATCCAAGTAGACCAGGGAATTGTA  550

seq1  ATCAGCTCTAAAGAGAAACAAAAAATCTTCCCAGAACTTTCTCCTCGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTAAAGAGAAACAAAAAATCTTCCCAGAACTTTCTCCTCGGAA  600

seq1  TGCTACCAGAAAAGAAAGGTAAGCATGAACCCTGCTGTAAACCCTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCAGAAAAGAAAGGTAAGCATGAACCCTGCTGTAAACCCTTCTGT  650

seq1  CTTACAGTGGTGACCTGACTGGATAATATGCCAGTGGAATCATGGCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTGGTGACCTGACTGGATAATATGCCAGTGGAATCATGGCACAA  700

seq1  AAATTGTGGGAATAACCAAGCATTATCTGTTTGATTTTAAAGCCCACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGGGAATAACCAAGCATTATCTGTTTGATTTTAAAGCCCACTCC  750

seq1  ATGAGATGGAGCCCATGCCTAACACTGCTTCGGTGGTGAAGAAGAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGAGCCCATGCCTAACACTGCTTCGGTGGTGAAGAAGAACCTG  800

seq1  GGACTAGATTGGCAGGGGGACAGAGGAAATGAAAACCAATTCTATTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGATTGGCAGGGGGACAGAGGAAATGAAAACCAATTCTATTGTCT  850

seq1  GTTAAAAAAAAAAAAAAACATGTAACAATATAATGACTCCTAAGGACATT  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT-AAAAAAAAAAAAAACATGTAACAATATAATGACTCCTAAGGACATT  899

seq1  CTGCTATGCCCATATCTTGCTCAGCCACCATCAAAGAAGCTTCCAACTGT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGCTATGCCCATATCTTGCTCAGCCACCATCAAAGAAGCTTCC-ACTGT  948

seq1  ACATGGGAACAAATTCAGAGACATACAAATGAGCAATGTTCAGAGAGTAA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  ACATGGGAACAAATTCAGAGACATACAAATGAGC-ATGTTCAGAGAGTAG  997

seq1  GACATCTTAGAATTCCTAGTCCTAAATGGGATGTCTCCATCAAATCTCTA  1050
      ||||||||||   ||||||| ||||||||||||||| |||||||||||||
seq2  GACATCTTAG--CTCCTAGT-CTAAATGGGATGTCT-CATCAAATCTCTA  1043

seq1  CCCTTAAGGCTCAGGAAACCTTCTGGAAAAAGAG  1084
       || ||  ||||||  ||||| |||  |||||||
seq2  ACCCTA--GCTCAG--AACCTCCTG--AAAAGAG  1071


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