BAC Information

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BAC

Clone NameB6Ng01-309P18
Chromosome1 (Build37)
Map Location 101,999,931 - 102,133,643
singlet/doubletdoublet
Overlap geneC230078M14Rik, EG666200
Upstream geneLOC633295
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309P18.bB6Ng01-309P18.g
ACCGA102090GA102091
length1,1301,056
definitionB6Ng01-309P18.b B6Ng01-309P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,132,529 - 102,133,643)(101,999,931 - 102,000,977)
sequence
gaattccaaacattcttttgaacagccatttaggaaaacaaaacaaacaa
aaacacaaacaagctgagggctcaattatatggatgaacacatgtgtact
atttataaaactttataaaaatgtaattaaatgttgtttttaatatgtgt
agaaattaattattctgtagaattcatatatactgaattatttctgtacg
agaattacactacagaaagcatggcctggataactcttctttgatatccc
tgagactgtttgccattatttggaaaagtcttggctcaagacccccaaaa
ccaagtgtggagcccaaaggagatttacataccccaaaggacagaagcca
cggaataagagacaaagacaggagatagaagatggaggagggaaagagaa
caaaggagagtagagaaaatgggtaaaggaaagggatactgagaatttat
tcagggaagggaggggtcagacaatggacttctgaatagagagaagagag
atgtggtacataggaaagtgacagtttataaaggtacaagggaaagaaac
cccatgtacagatgaggtgtttcattttaattgggcatgttaactatatg
agccaaaggaggtttttcattgatggctattagtacattgatagctagac
tttggtagtcaccctcagaaggaggaaatagcccttgggggctagcttca
ggattgtaatctaaccagtttttatccaggtagacagaaaagggtaaggt
tttccagagccatgctcattatcttcaagttggacaaagtcccttcagcc
acatgagaactctgggataggttagaaactgtgtttggagatcagggcct
gaaacaagaatagagatctgtacactgggggcatatattccccaccatat
ccacaaaaagaccagatataagttttttcctggtactacgtaagaaactg
agtcatcctttttcttccctagcctgagatgtgtgactctgctgaaaacc
ctaagatctgcgcgctggactcgaccagcaagtaagaatgcttgcaacag
aatcctttctgcaccaccgtttattgggaagagcttggaattacgaaggc
caaagagaacctctaagcccagaattggtg

gaattcagagatctgcctgcctttataagcacaaaccttaaattttgctg
gaggaatcctgtcctgcaattacttttctaaccattccaggagaaaattt
tgctctgttccaggatgacattgaattcaggaatctacccacatttgtat
aagtctgcctttgtatctttccaataaactggctcgaagtgcagctgact
tttcttttaggtcatgaagcccctaatataattcatgttgcctctttata
ttttgcattattgagaaattttatttatatatttctgaactcatgttttc
agtgttctttcccacatccttatgggctttcctgaaggtcacagcattta
ccatttttgttaaggttatagagaaaccttcacctccaggatttttgatg
tgatacacacacacacacaaacttcatgccctgtaactaccaacactcat
ggctgtgatctaggaacaggaaactgggtcacaccatcctgtcaaaatgg
ccaagcagaattcgtcaaggaaaaacggatgttttattatattataaaag
tcatatttaaacctttcgtttaaaatatatttagatgacttggtctaaat
ggagtagagaaaagttcaactttaatagacttatagggatatatatatgt
gtatatacacatatatatatataaatttttactagccttcatcaaaactt
ggagatataatgctactttttactgccagatatatgggatccctcttaca
ttatttcttatagatatctggctaggataagagcaaaaaaaaaaaaaaaa
ctgattgctgtacccgtgtgattctccagtaacctttggttaccaaaaat
ctgtaaagtgagtcctcactttccataaagccatattgacactactctac
agtgagaggacaggtccttcaattcccctgaattaactacaaacctaagt
tcttcatcaatctttatgataacacaaagaaaaacttttgtagtgcataa
agatgacattcttgatctgggatactttttttctattcagacatacctac
ctgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102132529_102133643
seq2: B6Ng01-309P18.b_50_1179 (reverse)

seq1  CACCAATTCTGGGCTT--GGGGTCTCTTT-GCCTCTGTAAT--CAAGCTC  45
      ||||||||||||||||   || ||||||| ||||  |||||  |||||||
seq2  CACCAATTCTGGGCTTAGAGGTTCTCTTTGGCCTTCGTAATTCCAAGCTC  50

seq1  -TCCCAATAAACG--TGTGCAG-AAGGATTCTGTTGC-AGCA-TCTTACT  89
       ||||||||||||   |||||| |||||||||||||| |||| |||||||
seq2  TTCCCAATAAACGGTGGTGCAGAAAGGATTCTGTTGCAAGCATTCTTACT  100

seq1  TGCTGGTCGAGTCCAGCGCGCAAGATCT--AGGTTTTCAGCAGAGTCACA  137
      ||||||||||||||||||||| ||||||   |||||||||||||||||||
seq2  TGCTGGTCGAGTCCAGCGCGC-AGATCTTAGGGTTTTCAGCAGAGTCACA  149

seq1  CATCTCAGGCTAGGGAAG-AAAAGGATGACTCAGTTTCTTACGTAGTACC  186
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCTCAGGCTAGGGAAGAAAAAGGATGACTCAGTTTCTTACGTAGTACC  199

seq1  AGG-AAAAACTTATATCTGGTCTTTTTGTGGATATGGTGGGGAATATATG  235
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAACTTATATCTGGTCTTTTTGTGGATATGGTGGGGAATATATG  249

seq1  -CCCCAGTGTACAGATCTCTATTCTTGTTTCAGGCCCTGATCTCCAAACA  284
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGTACAGATCTCTATTCTTGTTTCAGGCCCTGATCTCCAAACA  299

seq1  CAGTTTCTAACCTATCCCAGAGTTCTCATGTGGCTGAAGGGACTTTGTCC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAACCTATCCCAGAGTTCTCATGTGGCTGAAGGGACTTTGTCC  349

seq1  AACTTGAAGATAATGAGCATGGCTCTGGAAAACCTTACCCTTTTCTGTCT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGATAATGAGCATGGCTCTGGAAAACCTTACCCTTTTCTGTCT  399

seq1  ACCTGGATAAAAACTGGTTAGATTACAATCCTGAAGCTAGCCCCCAAGGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATAAAAACTGGTTAGATTACAATCCTGAAGCTAGCCCCCAAGGG  449

seq1  CTATTTCCTCCTTCTGAGGGTGACTACCAAAGTCTAGCTATCAATGTACT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTCCTTCTGAGGGTGACTACCAAAGTCTAGCTATCAATGTACT  499

seq1  AATAGCCATCAATGAAAAACCTCCTTTGGCTCATATAGTTAACATGCCCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCATCAATGAAAAACCTCCTTTGGCTCATATAGTTAACATGCCCA  549

seq1  ATTAAAATGAAACACCTCATCTGTACATGGGGTTTCTTTCCCTTGTACCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGAAACACCTCATCTGTACATGGGGTTTCTTTCCCTTGTACCT  599

seq1  TTATAAACTGTCACTTTCCTATGTACCACATCTCTCTTCTCTCTATTCAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTGTCACTTTCCTATGTACCACATCTCTCTTCTCTCTATTCAG  649

seq1  AAGTCCATTGTCTGACCCCTCCCTTCCCTGAATAAATTCTCAGTATCCCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTGTCTGACCCCTCCCTTCCCTGAATAAATTCTCAGTATCCCT  699

seq1  TTCCTTTACCCATTTTCTCTACTCTCCTTTGTTCTCTTTCCCTCCTCCAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTACCCATTTTCTCTACTCTCCTTTGTTCTCTTTCCCTCCTCCAT  749

seq1  CTTCTATCTCCTGTCTTTGTCTCTTATTCCGTGGCTTCTGTCCTTTGGGG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCTCCTGTCTTTGTCTCTTATTCCGTGGCTTCTGTCCTTTGGGG  799

seq1  TATGTAAATCTCCTTTGGGCTCCACACTTGGTTTTGGGGGTCTTGAGCCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATCTCCTTTGGGCTCCACACTTGGTTTTGGGGGTCTTGAGCCA  849

seq1  AGACTTTTCCAAATAATGGCAAACAGTCTCAGGGATATCAAAGAAGAGTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCCAAATAATGGCAAACAGTCTCAGGGATATCAAAGAAGAGTT  899

seq1  ATCCAGGCCATGCTTTCTGTAGTGTAATTCTCGTACAGAAATAATTCAGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCCATGCTTTCTGTAGTGTAATTCTCGTACAGAAATAATTCAGT  949

seq1  ATATATGAATTCTACAGAATAATTAATTTCTACACATATTAAAAACAACA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAATTCTACAGAATAATTAATTTCTACACATATTAAAAACAACA  999

seq1  TTTAATTACATTTTTATAAAGTTTTATAAATAGTACACATGTGTTCATCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACATTTTTATAAAGTTTTATAAATAGTACACATGTGTTCATCC  1049

seq1  ATATAATTGAGCCCTCAGCTTGTTTGTGTTTTTGTTTGTTTTGTTTTCCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTGAGCCCTCAGCTTGTTTGTGTTTTTGTTTGTTTTGTTTTCCT  1099

seq1  AAATGGCTGTTCAAAAGAATGTTTGGAATTC  1115
      |||||||||||||||||||||||||||||||
seq2  AAATGGCTGTTCAAAAGAATGTTTGGAATTC  1130


seq1: chr1_101999931_102000977
seq2: B6Ng01-309P18.g_89_1123

seq1  TTTATAAGCACAAACCTTAAATTTTGCTGGAGGAATCCTGTCCTGCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCACAAACCTTAAATTTTGCTGGAGGAATCCTGTCCTGCAATT  50

seq1  ACTTTTCTAACCATTCCAGGAGAAAATTTTGCTCTGTTCCAGGATGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTAACCATTCCAGGAGAAAATTTTGCTCTGTTCCAGGATGACAT  100

seq1  TGAATTCAGGAATCTACCCACATTTGTATAAGTCTGCCTTTGTATCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGGAATCTACCCACATTTGTATAAGTCTGCCTTTGTATCTTTC  150

seq1  CAATAAACTGGCTCGAAGTGCAGCTGACTTTTCTTTTAGGTCATGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTGGCTCGAAGTGCAGCTGACTTTTCTTTTAGGTCATGAAGCC  200

seq1  CCTAATATAATTCATGTTGCCTCTTTATATTTTGCATTATTGAGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATAATTCATGTTGCCTCTTTATATTTTGCATTATTGAGAAATTT  250

seq1  TATTTATATATTTCTGAACTCATGTTTTCAGTGTTCTTTCCCACATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATATTTCTGAACTCATGTTTTCAGTGTTCTTTCCCACATCCTT  300

seq1  ATGGGCTTTCCTGAAGGTCACAGCATTTACCATTTTTGTTAAGGTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTCCTGAAGGTCACAGCATTTACCATTTTTGTTAAGGTTATAG  350

seq1  AGAAACCTTCACCTCCAGGATTTTTGATGTGATACACACACACACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTCACCTCCAGGATTTTTGATGTGATACACACACACACACAAA  400

seq1  CTTCATGCCCTGTAACTACCAACACTCATGGCTGTGATCTAGGAACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCCCTGTAACTACCAACACTCATGGCTGTGATCTAGGAACAGGA  450

seq1  AACTGGGTCACACCATCCTGTCAAAATGGCCAAGCAGAATTCGTCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCACACCATCCTGTCAAAATGGCCAAGCAGAATTCGTCAAGGA  500

seq1  AAAACGGATGTTTTATTATATTATAAAAGTCATATTTAAACCTTTCGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGATGTTTTATTATATTATAAAAGTCATATTTAAACCTTTCGTTT  550

seq1  AAAATATATTTAGATGACTTGGTCTAAATGGAGTAGAGAAAAGTTCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTTAGATGACTTGGTCTAAATGGAGTAGAGAAAAGTTCAACT  600

seq1  TTAATAGACTTATAGGGATATATATATGTGTATATACACATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGACTTATAGGGATATATATATGTGTATATACACATATATATATA  650

seq1  TAAATTTTTACTAGCCTTCATCAAAACTTGGAGATATAATGCTACTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTACTAGCCTTCATCAAAACTTGGAGATATAATGCTACTTTTT  700

seq1  ACTGCCAGATATATGGGATCCCTCTTACATTATTTCTTATAGATATCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGATATATGGGATCCCTCTTACATTATTTCTTATAGATATCTGG  750

seq1  CTAGGATAAGAGCAAAAAAAAAAAAAAAACTGATTGCTGTACCCGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATAAGAGCAAAAAAAAAAAAAAAACTGATTGCTGTACCCGTGTGA  800

seq1  TTCTCCAGTAACCTTTGGTTACCAAAAATCTGTAAAGTGAGTCCTCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTAACCTTTGGTTACCAAAAATCTGTAAAGTGAGTCCTCACTT  850

seq1  TCCATAAAGCCATATTGACACTACTCTACAGTGAGAGGACAGGTCCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAGCCATATTGACACTACTCTACAGTGAGAGGACAGGTCCTTCA  900

seq1  ATTCCCCTGAATTAACTACAAACCTAAGTTCTTCATCAAATCTTTATTGA  950
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  ATTCCCCTGAATTAACTACAAACCTAAGTTCTTCATC-AATCTTTA-TGA  948

seq1  TAACACAAAGAAAAAC-TTTGTAGTGGCCATAAAGGATGACATTCTTTGA  999
      |||||||||||||||| |||||||||  |||||| |||||||||| ||||
seq2  TAACACAAAGAAAAACTTTTGTAGTG--CATAAA-GATGACATTC-TTGA  994

seq1  TTCTTGGGATTACTTTTTTTTCTTATTTCAGACATACTTACCCTGATG  1047
      |   ||||| ||| |||||||||   ||||||||||| || |||||||
seq2  T--CTGGGA-TAC-TTTTTTTCT--ATTCAGACATACCTA-CCTGATG  1035


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