BAC Information

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BAC

Clone NameB6Ng01-310A08
Chromosome1 (Build37)4 (Build37)
Map Location 42,424,180 - 42,425,35867,992,486 - 67,993,000
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A08.bB6Ng01-310A08.g
ACCGA102114GA102115
length1,179759
definitionB6Ng01-310A08.b B6Ng01-310A08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,424,180 - 42,425,358)(67,992,486 - 67,993,000)
sequence
ggaattcaaaagcatgtttttttaatcttatgtattccttacattgtact
tcaacgttttacattgaaaaactgatgtattaagacgtatataaagttag
tgaaatcatttcctgtttcctttactgatgaaggaggagaaaaagcacac
atctaactaatccatttctacacagtatgtaaggggacagtgagtcaggt
accatcttggataagtggctttctcttatatactttccaatgtggaactt
ggttgcaatagctaaagtagaacactaagtcatatgggcagagtttgcaa
caccaacgccctgaagtcttcaggaagaggtcatcatgtcttcccaccaa
ttctggtctttctcattattctaaatcttgggaaagtggacaaatacctc
ctttgacttttgctctaaggatgcatgcaatctcctccctttgcctcctg
caaaaggaaggcaggcacatcttcctgggagcatcttagaactcaaagat
accctaaaaactcttagctgcgtgtggtgagatatactggacaaatgcaa
agtcgtatttctactcgagaagcctctgtttcaatatctgtctcaggctt
gccctgatggtttaagagttaggtgttattatactatttctgacaagttt
tgttacctccagatgtccccatgtcaccctctgccccaagaaggaaatgt
tgtgagtcctttaccggcttacactgcagtccttggagccaacaaaacat
tgcaaatcagtttcatgcttctagatttgaaaaaaggaatgtggatatct
cccatcatactttcagcctctttcagaatctggaatgccttgggttgagg
cccacatttccaagacaagactccagagcctcacataaagagcttgtata
ttccttaactcatgaatgcatatatcgattggactgaaaatgaaaagaac
agacccagttatagttgggaagctgcttgcaatcctagacagtggaggta
agggatccataagctaacattagggagaaagaagcgctcccctttctccc
tctctcccttccctgctcctccctctcctgctcttctccttcatcactcc
tcctctttctccctgtctctccctcccatttgctcaaatgttcctgctgg
gggtgaacaggagacttagactcttgaat

gaattctattctggtattcctccctagattggaccacctctttattttct
gttttaatagcagtgtacctatttttgccttattggattgtaagagcatt
ttagtatctgcttatctttttgaaatattgtcatgcaaagtttaaatgtt
tggggtgctcagccatttcactttcttttttcttttatggctaccatatt
tggagcttaactttatttttttctgctttgcaactctgtaaacatttagt
aacttttggtatagttttcagtttttatttttacaccaagtatttatctg
ctttgtggtttggtatataatatagatcaagaatacaatttcatgtttcc
tgaatggtgagccaggaacccttatcacacaggcatctcagttccccggg
aagcttgatgccagaactccagaaaagatccaaatccatggttgctattt
gccccttcttagatttgggaacaaaacacccatggaaggagttacagaga
caaagtttggagctgaaacgaaaggatggatcatctagagactgccatat
cctgggatccatcccataatcagcctccaaacactgacaacattgcatac
actagcaagactttgctgaaaggtgtctcttgtgagactatgccggggcc
tagcaaacacagaagtggatactcacagttagctattggatggatcacag
ggcccccaatggaggagctagagaaagtacccaaggagctaaagacatct
gcaacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42424180_42425358
seq2: B6Ng01-310A08.b_48_1225

seq1  GAATTCAAAAGCATGTTTTTTTAATCTTATGTATTCCTTACATTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCATGTTTTTTTAATCTTATGTATTCCTTACATTGTACTT  50

seq1  CAACGTTTTACATTGAAAAACTGATGTATTAAGACGTATATAAAGTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTTTACATTGAAAAACTGATGTATTAAGACGTATATAAAGTTAGT  100

seq1  GAAATCATTTCCTGTTTCCTTTACTGATGAAGGAGGAGAAAAAGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTTCCTGTTTCCTTTACTGATGAAGGAGGAGAAAAAGCACACA  150

seq1  TCTAACTAATCCATTTCTACACAGTATGTAAGGGGACAGTGAGTCAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAATCCATTTCTACACAGTATGTAAGGGGACAGTGAGTCAGGTA  200

seq1  CCATCTTGGATAAGTGGCTTTCTCTTATATACTTTCCAATGTGGAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGGATAAGTGGCTTTCTCTTATATACTTTCCAATGTGGAACTTG  250

seq1  GTTGCAATAGTTAAAGTAGAACACTAAGTCATATGGGCAGAGTTTGCAAC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAATAGCTAAAGTAGAACACTAAGTCATATGGGCAGAGTTTGCAAC  300

seq1  ACCAACGCCCTGAAGTCTTCAGGAAGAGGTCATCATGTCTTCCCACCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGCCCTGAAGTCTTCAGGAAGAGGTCATCATGTCTTCCCACCAAT  350

seq1  TCTGGTCTTTCTCATTATTCTAAATCTTGGGAAAGTGGACAAATACCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTTTCTCATTATTCTAAATCTTGGGAAAGTGGACAAATACCTCC  400

seq1  TTTGACTTTTGCTCTAAGGATGCATGCAATCTCCTCCCTTTGCCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTTGCTCTAAGGATGCATGCAATCTCCTCCCTTTGCCTCCTGC  450

seq1  AAAAGGAAGGCAGGCACATCTTCCTGGGAGCATCTTAGAACTCAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGCAGGCACATCTTCCTGGGAGCATCTTAGAACTCAAAGATA  500

seq1  CCCTAAAAACTCTTAGCTGCGTGTGGTGAGATATACTGGACAAATGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAACTCTTAGCTGCGTGTGGTGAGATATACTGGACAAATGCAAA  550

seq1  GTCGTATTTCTACTCGAGAAGCCTCTGTTTCAATATCTGTCTCAGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATTTCTACTCGAGAAGCCTCTGTTTCAATATCTGTCTCAGGCTTG  600

seq1  CCCTGATGGTTTAAGAGTTAGGTGTTATTATACTATTTCTGACAAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGTTTAAGAGTTAGGTGTTATTATACTATTTCTGACAAGTTTT  650

seq1  GTTACCTCCAGATGTCCCCATGTCACCCTCTGCCCCAAGAAGGAAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTCCAGATGTCCCCATGTCACCCTCTGCCCCAAGAAGGAAATGTT  700

seq1  GTGAGTCCTTTACCGGCTTACACTGCAGTCCTTGGAGCCAACAAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCTTTACCGGCTTACACTGCAGTCCTTGGAGCCAACAAAACATT  750

seq1  GCAAATCAGTTTCATGCTTCTAGATTTGAAAAAAGGAATGTGGATATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAGTTTCATGCTTCTAGATTTGAAAAAAGGAATGTGGATATCTC  800

seq1  CCATCATACTTTCAGCCTCTTTCAGAATCTGGAATGCCTTGGGTTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATACTTTCAGCCTCTTTCAGAATCTGGAATGCCTTGGGTTGAGGC  850

seq1  CCACATTTCCAAGACAAGACTCCAGAGCCTCACAT-AAGAGCTTGTATAT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCACATTTCCAAGACAAGACTCCAGAGCCTCACATAAAGAGCTTGTATAT  900

seq1  TCCTTAACTCATGAATGCATATATCGATTGGACTGAAAATGAAAAGAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACTCATGAATGCATATATCGATTGGACTGAAAATGAAAAGAACA  950

seq1  GACCCAGTTATAGTT-GGAAGCTGCTTGCAATCCTAGACAGTGGAGGTAA  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTATAGTTGGGAAGCTGCTTGCAATCCTAGACAGTGGAGGTAA  1000

seq1  -GGATCCATAAGCTAACA-TAGGGAGAA--GAGCGCTCCCCCTTTCTCCC  1044
       ||||||||||||||||| |||||||||   |||||| ||||||||||||
seq2  GGGATCCATAAGCTAACATTAGGGAGAAAGAAGCGCT-CCCCTTTCTCCC  1049

seq1  TCTCTCCCTTTCCCTGCTTCCTCCCTCTCCTGCTCCTTCTCCCTTTCCAT  1094
      |||||||| |||||||| |||||||||||||||| |||||||   | |||
seq2  TCTCTCCC-TTCCCTGC-TCCTCCCTCTCCTGCT-CTTCTCC---TTCAT  1093

seq1  CACTC--TCTCTTTCTCCCTGTCTCTCCCTCTCCCTTTTGCTC-AATGTT  1141
      |||||   ||||||||||||||||||||  ||||| ||||||| ||||||
seq2  CACTCCTCCTCTTTCTCCCTGTCTCTCC--CTCCCATTTGCTCAAATGTT  1141

seq1  CCTGCCTGGGGTGAACAGGAGAC-TAGACTTCCTTGAAT  1179
      |||||  |||||||||||||||| ||||||  |||||||
seq2  CCTGCTGGGGGTGAACAGGAGACTTAGACT--CTTGAAT  1178


seq1: chr4_67992486_67993000
seq2: B6Ng01-310A08.g_390_826

seq1  TAGATCAAGAATACAAACATATGGGGTTGGGGATTTAGCTCAGTGGTAGA  50
      ||||||||||||||||    |||           ||  || | |||| ||
seq2  TAGATCAAGAATACAATTTCATG-----------TTTCCTGAATGGT-GA  38

seq1  GC---GCTTTCCTAGCAAGCACAAGGTCCTGGGTTCGGGCCTCAGCTCTG  97
      ||   |    | || ||  |||| |   ||  |||          | | |
seq2  GCCAGGAACCCTTATCA--CACAGGCATCTCAGTT----------CCCCG  76

seq1  GGAAAAAAAAAGAATACAAACATATTTAAGATATAAGATACAATTTGCTA  147
      ||||                                          ||| 
seq2  GGAA------------------------------------------GCTT  84

seq1  AACGCATGAAACTCAAGAAGA-ATGAAGACCAAAGTGTGGACACTGTGCC  196
       | ||  | ||||| |||| | ||  | | | | |  ||  |  | ||||
seq2  GATGCCAG-AACTCCAGAAAAGATCCAAATCCATGGTTG--CTATTTGCC  131

seq1  CCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAA  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAA  181

seq1  AGTTAGGATCTGAGACGAAAGGATGGACCATATAGAGACTGTCATATCCA  296
      |||| ||| |||| ||||||||||||| ||| ||||||||| ||||||| 
seq2  AGTTTGGAGCTGAAACGAAAGGATGGATCATCTAGAGACTGCCATATCCT  231

seq1  GGGAGCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCTTACACT  346
      |||| |||||||||||||||| ||||||| |||||| |||||| ||||||
seq2  GGGATCCATCCCATAATCAGCCTCCAAACACTGACAACATTGCATACACT  281

seq1  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTA  396
      ||||||| ||||||||||||             |||||||||||||||||
seq2  AGCAAGACTTTGCTGAAAGG-------------TGTCTCTTGTGAGACTA  318

seq1  TGTCCGGGCCTAGCAAACACAGAAGAGGATGCTCACAGTCAGCTATTGGA  446
      || | |||||||||||||||||||| |||| |||||||| ||||||||||
seq2  TGCCGGGGCCTAGCAAACACAGAAGTGGATACTCACAGTTAGCTATTGGA  368

seq1  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACTCAAGGAGCT  496
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  TGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  418

seq1  AAAGGGATCTGCAACCCTA  515
      ||||  |||||||||||||
seq2  AAAGACATCTGCAACCCTA  437


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