BAC Information

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BAC

Clone NameB6Ng01-310A19
Chromosome1 (Build37)
Map Location 133,046,185 - 133,209,313
singlet/doubletdoublet
Overlap geneLgtn, Rassf5, Ikbke, Srgap2
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
Downstream geneLOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A19.bB6Ng01-310A19.g
ACCGA102136GA102137
length1,1841,072
definitionB6Ng01-310A19.b B6Ng01-310A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,046,185 - 133,047,360)(133,208,242 - 133,209,313)
sequence
gaattcattagggagaggagagggaggctgttagcattctgtctaaactc
caccccactgttacctggcaacagccaggtaggcctgacccactataaaa
ggggctgcttgccccctcctccctctcttgcctttgggctcttccctccc
cccaccctttcccctccctccacatggccatggccagcctctacttctct
atccctctctgcctttctctgcttctactaccctctttttgttttgtttt
gttttggtttggtttggtttatttttggtttttcgagacagggtttctct
gcagccctggcttccctagaactcactttgtagaccaggctggcctcaaa
ctcagaaatccacctgcctctacctcccaagtgctaggattaaaggcgtg
cgccaccaagcccagctttctactaccctcttaattcccttccccatgcc
ctgaataaactctattctatactataaggtcgtgtgtgtctggtctctca
ggaagccaacgggatgcctaggcatgggcccgctgagacacacctttccc
cccacacctcaccacacccacattatacctctttttctttctataaacac
attggaggcttaaaaaaaaaggaatctctcttctaacctgtggttgcttc
aaaatatcccttgttcttgtaagtaatctatgttacagctctgttcctgt
ctagtgtaatttgtggagattaacccccttccagcaaatttcactcttag
tagttgtaatgctgtaattccagctatgttgggaggctgagacaggagaa
tcacaagtttaatgcatgcctgggccacagaatgagttcaaggtcaacct
ggacaaaaaatacatatgtacatatgtataagtcaggttctctagagtca
cagacttatggatagtcttctagatagtaaaggaatttattgatgactta
cagtcacagtccaattcccaacatgattcagtccgcagctggtgaatgga
aagtccaggatctagcagttactcaggctccacggagcaagcagcgaagg
agccaagaggctagacttcctttcctttccattgttccttatattgttgc
ttccagcagagtgtgtagcccagaataaagggtgtttccacccacacgtt
tatttccggatgaaagggtagtccagaataaagg
gaattcactcaggtttcttagaaatagtgtttctctctgcctatcacaca
ttccaataactctggtttcttattgttactaaaacaccctcaaatcacat
taaagaaacaaggcttttctaagctttctgtcttggagaaggtccagaga
aggattttaaaattaaatgtctaataatgaatgtctaaatgtctatgagc
tggatgcagtggtgtaggactgtgaacagcatttgaaggccaaggcagga
agacaatgagtctggggaacgtaacaaatctctgtcttaagcaaagacaa
accaactcctatgtagccaggcagcagccactgagatgatacccttgcct
gctggcctctctgtctttagttttggtattgtggagaatacctctcagcc
actgctgtccatggcaattgttcatacctcatgccatctctaatgtccta
cagtgattatagaaggatcacaggtgcacatcatattcttcagcaaagaa
gaacgccatttgttagaggaaaaccagctttgtagcataagtctggatgt
aggacacactagaaataaacttcacccaatccagaagaatggcagtggaa
tccaaaggctctagttccttttcagggtctgtcagaattggacactgaga
acctactgctgataaccataggaaggccaaactcctcagcaatgcccatc
aagctttgtagaggatgctcccaaagacagcccaggcttctgtgtcagga
caggcacttaattagggcttacttacagttttagaggattagttcattgt
catcatggtggcagaaaaaaatggtagcacacaggcatacagacctgata
caggtagctgacagttctacatctggatctgcaggcagcagcagaaagag
aaagccaggccctggcttggcttttgaagcctcaaagcccaccctccact
gacatacttccttcaacaagaccatagctactccaacaaggccacactta
ctagttccctcttaagtagtgctactccccacccgaccctcaccctgaga
cagggttttctcttgtgtagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133046185_133047360
seq2: B6Ng01-310A19.b_49_1232

seq1  GAATTCATTAGGGAGAGGAGAGGGAGGCTGTTAGCATTCTGTCTAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGGAGAGGAGAGGGAGGCTGTTAGCATTCTGTCTAAACTC  50

seq1  CACCCCACTGTTACCTGGCAACAGCCAGGTAGGCCTGACCCACTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTGTTACCTGGCAACAGCCAGGTAGGCCTGACCCACTATAAAA  100

seq1  GGGGCTGCTTGCCCCCTCCTCCCTCTCTTGCCTTTGGGCTCTTCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTTGCCCCCTCCTCCCTCTCTTGCCTTTGGGCTCTTCCCTCCC  150

seq1  CCCACCCTTTCCCCTCCCTCCACATGGCCATGGCCAGCCTCTACTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTTCCCCTCCCTCCACATGGCCATGGCCAGCCTCTACTTCTCT  200

seq1  ATCCCTCTCTGCCTTTCTCTGCTTCTACTACCCTCTTTTTGTTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCTGCCTTTCTCTGCTTCTACTACCCTCTTTTTGTTTTGTTTT  250

seq1  GTTTTGGTTTGGTTTGGTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTGGTTTGGTTTATTTTTGGTTTTTCGAGACAGGGTTTCTCT  300

seq1  GCAGCCCTGGCTTCCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGGCTTCCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCAAA  350

seq1  CTCAGAAATCCACCTGCCTCTACCTCCCAAGTGCTAGGATTAAAGGCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCACCTGCCTCTACCTCCCAAGTGCTAGGATTAAAGGCGTG  400

seq1  CGCCACCAAGCCCAGCTTTCTACTACCCTCTTAATTCCCTTCCCCATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCAAGCCCAGCTTTCTACTACCCTCTTAATTCCCTTCCCCATGCC  450

seq1  CTGAATAAACTCTATTCTATACTATAAGGTCGTGTGTGTCTGGTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAACTCTATTCTATACTATAAGGTCGTGTGTGTCTGGTCTCTCA  500

seq1  GGAAGCCAACGGGATGCCTAGGCATGGGCCCGCTGAGACACACCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAACGGGATGCCTAGGCATGGGCCCGCTGAGACACACCTTTCCC  550

seq1  CCCACACCTCACCACACCCACATTATACCTCTTTTTCTTTCTATAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTCACCACACCCACATTATACCTCTTTTTCTTTCTATAAACAC  600

seq1  ATTGGAGGCTTAAAAAAAAAGGAATCTCTCTTCTAACCTGTGGTTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGCTTAAAAAAAAAGGAATCTCTCTTCTAACCTGTGGTTGCTTC  650

seq1  AAAATATCCCTTGTTCTTGTAAGTAATCTATGTTACAGCTCTGTTCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCTTGTTCTTGTAAGTAATCTATGTTACAGCTCTGTTCCTGT  700

seq1  CTAGTGTAATTTGTGGAGATTAACCCCCTTCCAGCAAATTTCACTCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAATTTGTGGAGATTAACCCCCTTCCAGCAAATTTCACTCTTAG  750

seq1  TAGTTGTAATGCTGTAATTCCAGCTATGTTGGGAGGCTGAGACAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTAATGCTGTAATTCCAGCTATGTTGGGAGGCTGAGACAGGAGAA  800

seq1  TCACAAGTTTAATGCATGCCTGGGCCACAGAATGAGTTCAAGGTCAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTTAATGCATGCCTGGGCCACAGAATGAGTTCAAGGTCAACCT  850

seq1  GGACAAAAAATACATATGTACATATGTATTAGTCAGGGTTCTCTAGAGTC  900
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  GGACAAAAAATACATATGTACATATGTATAAGTCA-GGTTCTCTAGAGTC  899

seq1  ACAGAACTTATGGATAGTC-TCTAGATAGTAAAGGAATTTATTGATGACT  949
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAG-ACTTATGGATAGTCTTCTAGATAGTAAAGGAATTTATTGATGACT  948

seq1  TACAGTCAACAGTCCAATTCCCAACAATGATTCAGT-CGCAGCT-GTGAA  997
      ||||||| ||||||||||||||||| |||||||||| ||||||| |||||
seq2  TACAGTC-ACAGTCCAATTCCCAAC-ATGATTCAGTCCGCAGCTGGTGAA  996

seq1  TGG-AAGTCCAAGGATCTAGCAGTTACTCAGGCT-CACGGAGCAAGCAGG  1045
      ||| |||||| ||||||||||||||||||||||| ||||||||||||| |
seq2  TGGAAAGTCC-AGGATCTAGCAGTTACTCAGGCTCCACGGAGCAAGCA-G  1044

seq1  CGAAGGAG-CAAGA-GCTAGACTCCCTT---CTTCCAATG-TCCTTATAT  1089
      |||||||| ||||| |||||||| ||||    ||||| || |||||||||
seq2  CGAAGGAGCCAAGAGGCTAGACTTCCTTTCCTTTCCATTGTTCCTTATAT  1094

seq1  TGT---CTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTG-TTCCA-CC  1134
      |||    |||||||||  |||||||||||| |||||| ||| ||||| ||
seq2  TGTTGCTTCCAGCAGAGTGTGTAGCCCAGAATAAAGG-GTGTTTCCACCC  1143

seq1  ACACCTTTAATTCCAGATGAAAGGTGTAGCCCAGATTAAAGG  1176
      |||| |||| |||| ||||||||| |||| ||||| ||||||
seq2  ACACGTTTATTTCCGGATGAAAGG-GTAGTCCAGAATAAAGG  1184

seq1: chr1_133208242_133209313
seq2: B6Ng01-310A19.g_68_1139 (reverse)

seq1  GGCTACAC-AGAG-AAACCCTGTCTCAGGGGTGGAGGGGTCGGGTGGGGA  48
      |||||||| |||| ||||||||||||| |||||   ||||||||||||||
seq2  GGCTACACAAGAGAAAACCCTGTCTCA-GGGTG--AGGGTCGGGTGGGGA  47

seq1  GTAGCACTACTTAAGAGGG-ACTAGTAGGTGTGGCCTTGTTGGAGTAGCT  97
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GTAGCACTACTTAAGAGGGAACTAGTAAGTGTGGCCTTGTTGGAGTAGCT  97

seq1  ATGGTCTTGTTGAAGGAAGTATGTCAGTGG-GGGTGGGCTTTGAGGCTTC  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGGTCTTGTTGAAGGAAGTATGTCAGTGGAGGGTGGGCTTTGAGGCTTC  147

seq1  AAAAGCCCAAGCCAGGGCCTGGCTTTCTCTTTCTGCTGCTGCCTGCAGAT  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAG-CCAAGCCAGGGCCTGGCTTTCTCTTTCTGCTGCTGCCTGCAGAT  196

seq1  CCAGATGTAGAACTGTCAGCTACCTGTATCAGGTCTGTATGCCTGTGTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTAGAACTGTCAGCTACCTGTATCAGGTCTGTATGCCTGTGTGC  246

seq1  TACCATTTTTTTCTGCCACCATGATGACAATGAACTAATCCTCTAAAACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTTTTCTGCCACCATGATGACAATGAACTAATCCTCTAAAACT  296

seq1  GTAAGTAAGCCCTAATTAAGTGCCTGTCCTGACACAGAAGCCTGGGCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAGCCCTAATTAAGTGCCTGTCCTGACACAGAAGCCTGGGCTGT  346

seq1  CTTTGGGAGCATCCTCTACAAAGCTTGATGGGCATTGCTGAGGAGTTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGAGCATCCTCTACAAAGCTTGATGGGCATTGCTGAGGAGTTTGG  396

seq1  CCTTCCTATGGTTATCAGCAGTAGGTTCTCAGTGTCCAATTCTGACAGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTATGGTTATCAGCAGTAGGTTCTCAGTGTCCAATTCTGACAGAC  446

seq1  CCTGAAAAGGAACTAGAGCCTTTGGATTCCACTGCCATTCTTCTGGATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGGAACTAGAGCCTTTGGATTCCACTGCCATTCTTCTGGATTG  496

seq1  GGTGAAGTTTATTTCTAGTGTGTCCTACATCCAGACTTATGCTACAAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGTTTATTTCTAGTGTGTCCTACATCCAGACTTATGCTACAAAGC  546

seq1  TGGTTTTCCTCTAACAAATGGCGTTCTTCTTTGCTGAAGAATATGATGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCCTCTAACAAATGGCGTTCTTCTTTGCTGAAGAATATGATGTG  596

seq1  CACCTGTGATCCTTCTATAATCACTGTAGGACATTAGAGATGGCATGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGATCCTTCTATAATCACTGTAGGACATTAGAGATGGCATGAGG  646

seq1  TATGAACAATTGCCATGGACAGCAGTGGCTGAGAGGTATTCTCCACAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACAATTGCCATGGACAGCAGTGGCTGAGAGGTATTCTCCACAATA  696

seq1  CCAAAACTAAAGACAGAGAGGCCAGCAGGCAAGGGTATCATCTCAGTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTAAAGACAGAGAGGCCAGCAGGCAAGGGTATCATCTCAGTGGC  746

seq1  TGCTGCCTGGCTACATAGGAGTTGGTTTGTCTTTGCTTAAGACAGAGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGGCTACATAGGAGTTGGTTTGTCTTTGCTTAAGACAGAGATT  796

seq1  TGTTACGTTCCCCAGACTCATTGTCTTCCTGCCTTGGCCTTCAAATGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACGTTCCCCAGACTCATTGTCTTCCTGCCTTGGCCTTCAAATGCTG  846

seq1  TTCACAGTCCTACACCACTGCATCCAGCTCATAGACATTTAGACATTCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCCTACACCACTGCATCCAGCTCATAGACATTTAGACATTCAT  896

seq1  TATTAGACATTTAATTTTAAAATCCTTCTCTGGACCTTCTCCAAGACAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACATTTAATTTTAAAATCCTTCTCTGGACCTTCTCCAAGACAGA  946

seq1  AAGCTTAGAAAAGCCTTGTTTCTTTAATGTGATTTGAGGGTGTTTTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGAAAAGCCTTGTTTCTTTAATGTGATTTGAGGGTGTTTTAGTA  996

seq1  ACAATAAGAAACCAGAGTTATTGGAATGTGTGATAGGCAGAGAGAAACAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGAAACCAGAGTTATTGGAATGTGTGATAGGCAGAGAGAAACAC  1046

seq1  TATTTCTAAGAAACCTGAGTGAATTC  1072
      ||||||||||||||||||||||||||
seq2  TATTTCTAAGAAACCTGAGTGAATTC  1072