BAC Information

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BAC

Clone NameB6Ng01-310C05
Chromosome1 (Build37)
Map Location 174,303,728 - 174,421,701
singlet/doubletdoublet
Overlap geneKcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9
Upstream genePvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9
Downstream geneTagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310C05.bB6Ng01-310C05.g
ACCGA102200GA102201
length1,1721,150
definitionB6Ng01-310C05.b B6Ng01-310C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,303,728 - 174,304,901)(174,420,532 - 174,421,701)
sequence
gaattctgctttcctcttccccagaggctgatgcagttctatgcaaagct
tctgaaatccctaacctgggcttcacttcattctggctgctccctactgt
tcctcccactctctgaaacccacaccagctagcactatgcagggatttcc
ctgaggtcagcagaaaaagaaaagcagtcgtaatgtggctattagccagg
gacattgcacattctccaaggcttgctaccacaaacctttacccatgcta
gctaacctagtttctttgcaaaataacacattacctatgctgtgcatagc
tgggcttgcaggcccagtattggccagtgctactgaaacagaagaatcta
gggatgatttctctacacgctgcattaaagactaaaccaggtcaaatgta
tttagaaaaaaaaagatgtgtgaggcatttttggtttatttttgtctgtt
cagaacaaactactaaataaactggatgcatctcttgttctcactgtgtc
tccttttagaaagggaaacctatcttgttatcaaggtttgaactcatagg
ctgagtttggggagaggagggttcaactaggctctgttggaagaacttcc
catccagtggccagcccttcctgctgacttttcctcacactggaacattt
caataatggtttcacccagtccttttcttgctccttcccttgttaaggta
agatcccttaacagatacattgcaaattcaggcaagccaggggaagcgag
ccagtaaggaacatccctccatagctctgcatcagctcctgcttccttat
agaacccagagatagtgccactcacaaaggggcctgctccccttgatcac
taattgagaaaatgtccccagagctggatctcatggaggcacttccccaa
ctgaagctcctttctctgtgataactccagcctgggtcaagttgacacac
acagccagccagtacagtggggaacacttcccagggttccgaccccacgg
cagaaatagtatctgttcaaaagctctgccactttctgcagctccgctca
tgcgactccaggggagagactgattctttgatagccagttctttccttct
gaatggggttctctcctacttataaggccaggcataagggagaaactagc
gtggagcctttctgcgaataca
gaattcccagaaccctcagggcctttctacacctcttcctggttctgccc
tttgtagtcatgggccaagttgctacaggaccttaaggacccgaattggg
atgtgtgataaaagcccatcctgttccagaggccactcgcttttccaagt
cagccctgtttcacgaggcatggcaggcaagcctacccaccctgattcct
tctgctgagaaactgtatgtgcgggagggtccagggaggtcagaaaggga
ggtgagacttcctggtgggccttcctcatgtcagggtctctggctttaac
tgtattacccagggctgtacttctcaagtaccaaggagaacgatactgca
gtgggccatcaattaatcggttctcgcccacaggcgctatgaagatggat
gtctgcctcgcgtgcctcatttgcctttccttccaaaaggaagagctcag
cacacatgggcgatatgtcaaagtcctgggagaggttgataagaacctct
gggttttttttttttgttttgttttgttttgtttttttgagatcacaaaa
ccaggactcaggagggtcccacgattcatgggctaacccttagcacccct
tcctttccactgtaatgcactgctgggcactaagctgaccgtttcttcat
cctttctctcaccctacaggggtccctcaaatatgagcctcctcccaatc
ttccgtgtactcaccccctcaccccaccctcacccccgtagagatcatgt
cttctactataggtggcccggttcccctgcccttccaccaaagtgcacct
agcaccaacagctgggtggcgtgggtgatgctgccctcggagctggaggc
ttggcaggtgtagtctccagcgctgcctcgctccacccgacggatccaca
gtgttccattctgcacctaggtaaggaatctttaaggaaaggcccttcct
gtttggtcagcctcagaccctgcagtttcagagctggccagcagaggaga
cagcggcctcaacttcggggaagccgatggaaacctcctcttcgacccat
cctgcctgctctgttcctctcctgcctcttccgttggtcctccaatcagc
tgaacatcacttgaactgaacctgacatgccaaggtcttgtcctcggaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174303728_174304901
seq2: B6Ng01-310C05.b_45_1216

seq1  GAATTCTGCTTTCCTCTTCCCCAGAGGCTGATGCAGTTCTATGCAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTCCTCTTCCCCAGAGGCTGATGCAGTTCTATGCAAAGCT  50

seq1  TCTGAAATCCCTAACCTGGGCTTCACTTCATTCTGGCTGCTCCCTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCCCTAACCTGGGCTTCACTTCATTCTGGCTGCTCCCTACTGT  100

seq1  TCCTCCCACTCTCTGAAACCCACACCAGCTAGCACTATGCAGGGATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCACTCTCTGAAACCCACACCAGCTAGCACTATGCAGGGATTTCC  150

seq1  CTGAGGTCAGCAGAAAAAGAAAAGCAGTCGTAATGTGGCTATTAGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCAGCAGAAAAAGAAAAGCAGTCGTAATGTGGCTATTAGCCAGG  200

seq1  GACATTGCACATTCTCCAAGGCTTGCTACCACAAACCTTTACCCATGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGCACATTCTCCAAGGCTTGCTACCACAAACCTTTACCCATGCTA  250

seq1  GCTAACCTAGTTTCTTTGCAAAATAACACATTACCTATGCTGTGCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTAGTTTCTTTGCAAAATAACACATTACCTATGCTGTGCATAGC  300

seq1  TGGGCTTGCAGGCCCAGTATTGGCCAGTGCTACTGAAACAGAAGAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGCAGGCCCAGTATTGGCCAGTGCTACTGAAACAGAAGAATCTA  350

seq1  GGGATGATTTCTCTACACGCTGCATTAAAGACTAAACCAGGTCAAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATTTCTCTACACGCTGCATTAAAGACTAAACCAGGTCAAATGTA  400

seq1  TTTAGAAAAAAAAAGATGTGTGAGGCATTTTTGGTTTATTTTTGTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAAAAAAGATGTGTGAGGCATTTTTGGTTTATTTTTGTCTGTT  450

seq1  CAGAACAAACTACTAAATAAACTGGATGCATCTCTTGTTCTCACTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAACTACTAAATAAACTGGATGCATCTCTTGTTCTCACTGTGTC  500

seq1  TCCTTTTAGAAAGGGAAACCTATCTTGTTATCAAGGTTTGAACTCATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGAAAGGGAAACCTATCTTGTTATCAAGGTTTGAACTCATAGG  550

seq1  CTGAGTTTGGGGAGAGGAGGGTTCAACTAGGCTCTGTTGGAAGAACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGGGGAGAGGAGGGTTCAACTAGGCTCTGTTGGAAGAACTTCC  600

seq1  CATCCAGTGGCCAGCCCTTCCTGCTGACTTTTCCTCACACTGGAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGCCAGCCCTTCCTGCTGACTTTTCCTCACACTGGAACATTT  650

seq1  CAATAATGGTTTCACCCAGTCCTTTTCTTGCTCCTTCCCTTGTTAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGGTTTCACCCAGTCCTTTTCTTGCTCCTTCCCTTGTTAAGGTA  700

seq1  AGATCCCTTAACAGATACATTGCAAATTCAGGCAAGCCAGGGGAAGCGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTTAACAGATACATTGCAAATTCAGGCAAGCCAGGGGAAGCGAG  750

seq1  CCAGTAAGGAACATCCCTCCATAGCTCTGCATCAGCTCCTGCTTCCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGGAACATCCCTCCATAGCTCTGCATCAGCTCCTGCTTCCTTAT  800

seq1  AGAACCCAGAGATAGTGCCACTCAC-AAGGGGCCTGCTCCCCTTGATCAC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAACCCAGAGATAGTGCCACTCACAAAGGGGCCTGCTCCCCTTGATCAC  850

seq1  TAATTGAGAAAATGTCCCCAGAGCTGGATCTCATGGAGGCACTTCCCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGAAAATGTCCCCAGAGCTGGATCTCATGGAGGCACTTCCCCAA  900

seq1  CTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGGGTCAAGTTGACACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGGGTCAAGTTGACACAC  950

seq1  ACAGCCAGCCAGTACAGTGGGGAACACTTCCCA-GGTTCCGACCCCACGG  998
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGCCAGCCAGTACAGTGGGGAACACTTCCCAGGGTTCCGACCCCACGG  1000

seq1  CAGGAAATAGTATCTGTTCAAAAGCTCTGCCACTTTCTGCAGCT-CGCTC  1047
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CA-GAAATAGTATCTGTTCAAAAGCTCTGCCACTTTCTGCAGCTCCGCTC  1049

seq1  ATGCGACTCCA-GGGAGAGACTGATTCTTTTGATTAGCAGTTTCCTTTCC  1096
      ||||||||||| ||||||||||||||| ||||||   |||||  ||||||
seq2  ATGCGACTCCAGGGGAGAGACTGATTC-TTTGATAGCCAGTT--CTTTCC  1096

seq1  TTCCTGAATTGGTGTCTCTCCTACTTATTAGGCCAGCCATAGAGGGAG-A  1145
      || |||||| ||  |||||||||||||| ||||||| |||| |||||| |
seq2  TT-CTGAATGGGGTTCTCTCCTACTTATAAGGCCAGGCATA-AGGGAGAA  1144

seq1  ACTAGC-TGAGGCTTTTCTGCCAGAATACA  1174
      |||||| ||  || |||||||  |||||||
seq2  ACTAGCGTGGAGCCTTTCTGC--GAATACA  1172

seq1: chr1_174420532_174421701
seq2: B6Ng01-310C05.g_67_1216 (reverse)

seq1  ATTCCGAGGACAAGACCTTGGCAAGGGCCAGGGTCAGGTGCAAGTGAGTG  50
      |||||||||||||||||||||||   | |||| ||| || |||||||   
seq2  ATTCCGAGGACAAGACCTTGGCA--TGTCAGGTTCA-GTTCAAGTGA--T  45

seq1  GGTCAGCTGGATTGGGAGGACCAAAGGGGAAGAAGGCAGGAGAGGAACAG  100
      | |||||| |||| ||||||||||   ||||| |||||||||||||||||
seq2  GTTCAGCT-GATT-GGAGGACCAA--CGGAAG-AGGCAGGAGAGGAACAG  90

seq1  AAGCCAAGCCCGGGGATGGGTCGGAGGAGGGAGGGGTTTTCCATCGGCTT  150
      |   || ||    |||||||||| |     |||| | |||||||||||||
seq2  A--GCAGGC---AGGATGGGTCGAA-----GAGGAGGTTTCCATCGGCTT  130

seq1  CCCCGAGGTTGAGG-CGCTGTCTCCCTCTGCTGGCCAGCTCTGGAACTGC  199
      |||||| ||||||| |||||||| ||||||||||||||||||| ||||||
seq2  CCCCGAAGTTGAGGCCGCTGTCT-CCTCTGCTGGCCAGCTCTGAAACTGC  179

seq1  AGGGTCTGAGGCTGACCAAACAGGAAGGGCCTTTCCTTAAAGATTCCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGAGGCTGACCAAACAGGAAGGGCCTTTCCTTAAAGATTCCTTA  229

seq1  CCTAGGTGCAGAATGGAACACTGTGGATCCGTCGGGTGGAGCGAGGCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTGCAGAATGGAACACTGTGGATCCGTCGGGTGGAGCGAGGCAGC  279

seq1  GCTGGAGACTACACCTGCCAAGCCTCCAGCTCCGAGGGCAGCATCACCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGACTACACCTGCCAAGCCTCCAGCTCCGAGGGCAGCATCACCCA  329

seq1  CGCCACCCAGCTGTTGGTGCTAGGTGCACTTTGGTGGAAGGGCAGGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCCAGCTGTTGGTGCTAGGTGCACTTTGGTGGAAGGGCAGGGGAA  379

seq1  CCGGGCCACCTATAGTAGAAGACATGATCTCTACGGGGGTGAGGGTGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCCACCTATAGTAGAAGACATGATCTCTACGGGGGTGAGGGTGGGG  429

seq1  TGAGGGGGTGAGTACACGGAAGATTGGGAGGAGGCTCATATTTGAGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGTGAGTACACGGAAGATTGGGAGGAGGCTCATATTTGAGGGAC  479

seq1  CCCTGTAGGGTGAGAGAAAGGATGAAGAAACGGTCAGCTTAGTGCCCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGGGTGAGAGAAAGGATGAAGAAACGGTCAGCTTAGTGCCCAGC  529

seq1  AGTGCATTACAGTGGAAAGGAAGGGGTGCTAAGGGTTAGCCCATGAATCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTACAGTGGAAAGGAAGGGGTGCTAAGGGTTAGCCCATGAATCG  579

seq1  TGGGACCCTCCTGAGTCCTGGTTTTGTGATCTCAAAAAAACAAAACAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCTCCTGAGTCCTGGTTTTGTGATCTCAAAAAAACAAAACAAAA  629

seq1  CAAAACAAAAAAAAAAAACCCAGAGGTTCTTATCAACCTCTCCCAGGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAAAAAAAAACCCAGAGGTTCTTATCAACCTCTCCCAGGACT  679

seq1  TTGACATATCGCCCATGTGTGCTGAGCTCTTCCTTTTGGAAGGAAAGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATCGCCCATGTGTGCTGAGCTCTTCCTTTTGGAAGGAAAGGCA  729

seq1  AATGAGGCACGCGAGGCAGACATCCATCTTCATAGCGCCTGTGGGCGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCACGCGAGGCAGACATCCATCTTCATAGCGCCTGTGGGCGAGA  779

seq1  ACCGATTAATTGATGGCCCACTGCAGTATCGTTCTCCTTGGTACTTGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATTAATTGATGGCCCACTGCAGTATCGTTCTCCTTGGTACTTGAGA  829

seq1  AGTACAGCCCTGGGTAATACAGTTAAAGCCAGAGACCCTGACATGAGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCCTGGGTAATACAGTTAAAGCCAGAGACCCTGACATGAGGAA  879

seq1  GGCCCACCAGGAAGTCTCACCTCCCTTTCTGACCTCCCTGGACCCTCCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACCAGGAAGTCTCACCTCCCTTTCTGACCTCCCTGGACCCTCCCG  929

seq1  CACATACAGTTTCTCAGCAGAAGGAATCAGGGTGGGTAGGCTTGCCTGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGTTTCTCAGCAGAAGGAATCAGGGTGGGTAGGCTTGCCTGCC  979

seq1  ATGCCTCGTGAAACAGGGCTGACTTGGAAAAGCGAGTGGCCTCTGGAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCGTGAAACAGGGCTGACTTGGAAAAGCGAGTGGCCTCTGGAACA  1029

seq1  GGATGGGCTTTTATCACACATCCCAATTCGGGTCCTTAAGGTCCTGTAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTTTTATCACACATCCCAATTCGGGTCCTTAAGGTCCTGTAGC  1079

seq1  AACTTGGCCCATGACTACAAAGGGCAGAACCAGGAAGAGGTGTAGAAAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCCCATGACTACAAAGGGCAGAACCAGGAAGAGGTGTAGAAAGG  1129

seq1  CCCTGAGGGTTCTGGGAATTC  1170
      |||||||||||||||||||||
seq2  CCCTGAGGGTTCTGGGAATTC  1150