BAC Information

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BAC

Clone NameB6Ng01-310G10
Chromosome1 (Build37)
Map Location 14,889,156 - 14,890,255
singlet/doubletsinglet
Overlap geneTrpa1
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310G10.bB6Ng01-310G10.g
ACCGA102387GA102388
length1,1241,132
definitionB6Ng01-310G10.b B6Ng01-310G10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaagtgaaacagtgaaggaaaatgactgattatcaatgagcc
ctagttatagatgcgagaacaaaatgcctgtaactttaaaaagtcagtct
gaattatcatcaactaattatcatcatccccacctctaggtgcaaataaa
gtatatttctgttaaagcagtatataagaattctaaaatgagctctcata
atataagtgacaacgaaaccagcttattcttattgaatatgacttagttt
acaattcatgggcatagaatacctgcataaactcaggccgcaaatttctt
agtccataaggctgctgcacagtcaaatgcaaaaagttacgtccaagatg
atcttttatgtctactttggcacctgaaaaaaagcacaatagaaaaataa
aatctgctcatgggtttataacatggtctttggtgatccttcccaaatct
ttaccttacagtcaactatagttaggtggaaaaaatggacatttttaaaa
tgagtttactttactctgtgtgtgtgtgacagagagagagagagagagag
agagagagagagacagagacagagagagacagagagacagagagacagag
agacagagagacagagagagagagcgagagagacagagagagagactgtg
atgctttatatttctaagtgaatcctcaagttttaaacataaaatgaaca
aagagcatgcccttttgtccccatggcaccaggctagcctgaaatggaga
cagtgttgcatctacacacatgtctactatgacagaaagctcctaacatc
ttcagccagctcctggtgtttaccagctgccttatacatgtgatatgtta
ttgctatgaattatctttcaatattttttttactggactgacattattaa
aaaatcctttattaaccctttgtgtgcacagagtatgtcccagtgcctga
catgagatagcgggttaacatgattatctgagcagatgggtctgcttctg
agcggtacctttacaggagggagcaaattcacaatgttccaggatgcaga
agctgtgctaaaataagtgggaggagcgtccttcagaatcaggtgctgtt
gattgtctgctcccttaaaacaaa

gaattcaacactggtgaacataaaaaagaaatagtacacattcgccaggc
cccaccccgagatgactagctataggcaatcaatgtctacagagggcgag
tatcagacttctccaggaaggagttcttgacaggttgtccaattccaagt
ggtcatcccaaaaccaaaatgtttatgtatatatgaacattgctaaatgg
gcccagcagatgtcatatattttcatatgtagattaatgtgatagaaaaa
gagaccataaactttagaggaacagaaagaagagagggtgcttcacataa
aaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaa
gatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgc
tgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttct
gcaaggcaaaagacaccgtcaataagacaaagagaccaccaacagattgg
gaaaggatctttacctatcctaaatcagataggggactaatatccaacat
atataaagaactcaagaaggtggacttcagaaaatcaaataaccccatta
aaaaatggggctcagaactgaacaaagaattctcacctgaggaataccga
atggcagagaagcacctgaaaaaatgttcaacatccttaatcatcaggga
aatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatgg
ctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaa
agaggaacactcctccattgttggtgggattgcaggcttgtacaaccact
ctggaaatcagtctggcggttcctcagaaaactggatatagtactaccgg
aggatccagcaatacctctcctgggcatatatccagaagatgccccaact
ggtaagaaggacacatgctccactatgtcatagcagccttatttataata
gcagaagctggatgaacccagatgccccctcacagagatgatacagaaaa
tggtggtacatctacacaatagagtactactcagcttattaaaggatgat
tatggaacttcttaggccaaatggatggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14889156_14890255
seq2: B6Ng01-310G10.b_46_1169

seq1  GAATTCTCCAAGTGAAACAGTGAAGGAAAATGACTGATTATCAATGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGTGAAACAGTGAAGGAAAATGACTGATTATCAATGAGCC  50

seq1  CTAGTTATAGATGCGAGAACAAAATGCCTGTAACTTTAAAAAGTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTATAGATGCGAGAACAAAATGCCTGTAACTTTAAAAAGTCAGTCT  100

seq1  GAATTATCATCAACTAATTATCATCATCCCCACCTCTAGGTGCAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCATCAACTAATTATCATCATCCCCACCTCTAGGTGCAAATAAA  150

seq1  GTATATTTCTGTTAAAGCAGTATATAAGAATTCTAAAATGAGCTCTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTCTGTTAAAGCAGTATATAAGAATTCTAAAATGAGCTCTCATA  200

seq1  ATATAAGTGACAACGAAACCAGCTTATTCTTATTGAATATGACTTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTGACAACGAAACCAGCTTATTCTTATTGAATATGACTTAGTTT  250

seq1  ACAATTCATGGGCATAGAATACCTGCATAAACTCAGGCCGCAAATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCATGGGCATAGAATACCTGCATAAACTCAGGCCGCAAATTTCTT  300

seq1  AGTCCATAAGGCTGCTGCACAGTCAAATGCAAAAAGTTACGTCCAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAAGGCTGCTGCACAGTCAAATGCAAAAAGTTACGTCCAAGATG  350

seq1  ATCTTTTATGTCTACTTTGGCACCTGAAAAAAAGCACAATAGAAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATGTCTACTTTGGCACCTGAAAAAAAGCACAATAGAAAAATAA  400

seq1  AATCTGCTCATGGGTTTATAACATGGTCTTTGGTGATCCTTCCCAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTCATGGGTTTATAACATGGTCTTTGGTGATCCTTCCCAAATCT  450

seq1  TTACCTTACAGTCAACTATAGTTAGGTGGAAAAAATGGACATTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTACAGTCAACTATAGTTAGGTGGAAAAAATGGACATTTTTAAAA  500

seq1  TGAGTTTACTTTACTCTGTGTGTGTGTGAC----------------AGAG  534
      ||||||||||||||||||||||||||||||                ||||
seq2  TGAGTTTACTTTACTCTGTGTGTGTGTGACAGAGAGAGAGAGAGAGAGAG  550

seq1  AGAGAGAGAGAGACAGAGACAGAGAGAGACAGAGAGACAGAGAGACAGAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAGAGACAGAGAGAGACAGAGAGACAGAGAGACAGAG  600

seq1  AGACAGAGAGACAGAGAGAGAGAGCGAGAGAGACAGAGAGAGAGACTGTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGACAGAGAGAGAGAGCGAGAGAGACAGAGAGAGAGACTGTG  650

seq1  ATGCTTTATATTTCTAAGTGAATCCTCAAGTTTTAAACATAAAATGAACA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTATATTTCTAAGTGAATCCTCAAGTTTTAAACATAAAATGAACA  700

seq1  AAGAGCATGCCCTTTTGTCCCCATGGCACCAGGCTAGCCTGAAATGGAGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATGCCCTTTTGTCCCCATGGCACCAGGCTAGCCTGAAATGGAGA  750

seq1  CAGTGTTGCATCTACACACATGTCTACTATGACAGAAAGCTCCTAACATC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGCATCTACACACATGTCTACTATGACAGAAAGCTCCTAACATC  800

seq1  TTCAGCCAGCTCCTGGTGTTTACCAGCTGCCTTATACATGTGATATGTTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAGCTCCTGGTGTTTACCAGCTGCCTTATACATGTGATATGTTA  850

seq1  TTGCTATGAATTATCTTTCAATA-TTTTTTTACTGGACTGACATTATTAA  883
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGCTATGAATTATCTTTCAATATTTTTTTTACTGGACTGACATTATTAA  900

seq1  AAAATCCTTTATTAA-CCTTTGTGTGCACAGAGTATGTCCCAGTGCCTGA  932
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAATCCTTTATTAACCCTTTGTGTGCACAGAGTATGTCCCAGTGCCTGA  950

seq1  CATGAGATAGCGGGTTAACATGATTATCTGAGCAGATGGGTCTGCTTCTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATAGCGGGTTAACATGATTATCTGAGCAGATGGGTCTGCTTCTG  1000

seq1  AGCGGTACCTTTACAG--AGGAGCAAATTCACAATGTTCCAGGATGCAGA  1030
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AGCGGTACCTTTACAGGAGGGAGCAAATTCACAATGTTCCAGGATGCAGA  1050

seq1  AGCTGTTGCTAAAATAAGTGG--AGAGCGTCCTTCAGAATCA-GTGCTGT  1077
      ||||| |||||||||||||||   |||||||||||||||||| |||||||
seq2  AGCTG-TGCTAAAATAAGTGGGAGGAGCGTCCTTCAGAATCAGGTGCTGT  1099

seq1  TGA-TGTCTGCTCCC-TAAAACAAA  1100
      ||| ||||||||||| |||||||||
seq2  TGATTGTCTGCTCCCTTAAAACAAA  1124


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