BAC Information

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BAC

Clone NameB6Ng01-310M05
Chromosome1 (Build37)
Map Location 3,664,757 - 3,665,824
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310M05.bB6Ng01-310M05.g
ACCGA102653GA102654
length1,0621,175
definitionB6Ng01-310M05.b B6Ng01-310M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaatgtcagaaccacgttttccaaaatacaaggaaacagtcc
catgtcatacccagcacactaatcatattatttttgctacctcccctccc
ccatttcttctacccttcattactttaggcctaattaacccttttgtgta
gactttcaaacacagtgaccacaccccttacctcagaatcaactgttcaa
aacagattcctggtctatcagaaatgtaatctcatcataagtgaccttat
cctagagattaattcatattgatataacccaacattatcattactctgta
gctttataatctcagctttaagcatcctgttttgattagtccctttctat
ggtcagctcattccagaaactacacttgaatttagacttttcctcaattt
gtttgctttaaccctttctaattaccatgcttacccatacttaacactgc
tcaaatgtatcttagtctcttacatgcatcatgattgagaaaacatcccc
ccccccaacacagacacacacacacacacacacacacacacacacacaca
cactggttaaagcttgcttgccacttccttccagtctgagcctttgcagt
tggcatttatgcacagctactggctgaggcatgggtatgcctaactacat
cttttttagacccttgactgtcaaaccaaagtggaacctgaggctactca
gcaagcccacccccatctttttaacctgttcagattgtatctactaaaat
tatttgtttgttagttggttggtttttctcttaaactctagacatattct
ttccttgccctcatttcactgagaaaaaattgaaacatcatcagaacaga
gctcacacatttcactattttatgtcacctgcaggcatctatagccactt
cttctgatccccgttttctttctagccatctttgcagttttgaagacttt
ttacagaaaaaatattcctggacttcctttcttttattctttatcaccca
tctttctgcacacacctcagaaagcatagctatccccaggactgccttac
aagttacaggtg

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaaat
gttcaatatccttaatcatcagggaaatgtaaatcaaaacaaccctgaga
ttccatctcacaccagtcagaatggctaagataaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaagtcacctggcggttcctc
agaaaactggatatactactactggaggatcctgcaatacttctcctggg
catatatccagaaaatgttccaaccggtaaaaaggacacatgctccacta
tgttcatagcagtcttatttacaatagccagaagctggaatgaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggaatactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggattgacctggagggcatcatcctgagtgaggtaacccaatcacaa
agtactcacacaatatgtactcactgataagtggatattaactccgaaac
ttaggatacccaagatttaagatacaatttgctaaacgcatgaaactgaa
gaagaatgcagaccaaagtgtggacactttgccccttcttaaaattggga
acaaaacatccatggaaggagttacagagacaaaatttggagctgagaca
aaaggatgggccatctagagactaccatatctcggggttccatcccataa
tcagcttccaatgttgacccattgcatacactagcaagattttgctgaaa
ggacccagaatttagctgtctcttgtgaaaatttgccagggccctagcaa
aaacagaattggatgcttcacagtcagccttatggtaatagaacaccttg
gccccccatggaaggaactctaaagaaatgacccaaagaagcttaaggga
gtctttccaaccttatagtggggaaacacatatataactaccaagtaccc
cgcgagacccttgaacttctagtctgctatgtgtaccaaaagaattgccc
ctagtcgacccatcttctggtaaaataaggagggccccgtttggaatcct
gctacatatctttctatgtgcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3664757_3665824
seq2: B6Ng01-310M05.b_46_1107

seq1  GAATTCAGTAATGTCAGAACCACGTTTTCCAAAATACAAGGAAACAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATGTCAGAACCACGTTTTCCAAAATACAAGGAAACAGTCC  50

seq1  CATGTCATACCCAGCACACTAATCATATTATTTTTGCTACCTCCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATACCCAGCACACTAATCATATTATTTTTGCTACCTCCCCTCCC  100

seq1  CCATTTCTTCTACCCTTCATTACTTTAGGCCTAATTAACCCTTTTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTCTACCCTTCATTACTTTAGGCCTAATTAACCCTTTTGTGTA  150

seq1  GACTTTCAAACACAGTGACCACACCCCTTACCTCAGAATCAACTGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAAACACAGTGACCACACCCCTTACCTCAGAATCAACTGTTCAA  200

seq1  AACAGATTCCTGGTCTATCAGAAATGTAATCTCATCATAAGTGACCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTCCTGGTCTATCAGAAATGTAATCTCATCATAAGTGACCTTAT  250

seq1  CCTAGAGATTAATTCATATTGATATAACCCAACATTATCATTACTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGATTAATTCATATTGATATAACCCAACATTATCATTACTCTGTA  300

seq1  GCTTTATAATCTCAGCTTTAAGCATCCTGTTTTGATTAGTCCCTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAATCTCAGCTTTAAGCATCCTGTTTTGATTAGTCCCTTTCTAT  350

seq1  GGTCAGCTCATTCCAGAAACTACACTTGAATTTAGACTTTTCCTCAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTCATTCCAGAAACTACACTTGAATTTAGACTTTTCCTCAATTT  400

seq1  GTTTGCTTTAACCCTTTCTAATTACCATGCTTACCCATACTTAACACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTAACCCTTTCTAATTACCATGCTTACCCATACTTAACACTGC  450

seq1  TCAAATGTATCTTAGTCTCTTACATGCATCATGATTGAGAAAACATCCCC  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAATGTATCTTAGTCTCTTACATGCATCATGATTGAGAAAACAT-CCC  499

seq1  CCCCCCCAACACAGACACACACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAACACAGACACACACACACACACACACACACACACACACACAC  549

seq1  ACACTGGTTAAAGCTTGCTTGCCACTTCCTTCCAGTCTGAGCCTTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTTAAAGCTTGCTTGCCACTTCCTTCCAGTCTGAGCCTTTGCAG  599

seq1  TTGGCATTTATGCACAGCTACTGGCTGAGGCATGGGTATGCCTAACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTTATGCACAGCTACTGGCTGAGGCATGGGTATGCCTAACTACA  649

seq1  TCTTTTTTAGACCCTTGACTGTCAAACCAAAGTGGAACCTGAGGCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGACCCTTGACTGTCAAACCAAAGTGGAACCTGAGGCTACTC  699

seq1  AGCAAGCCCACCCCCATCTTTTTAACCTGTTCAGATTGTATCTACTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCCACCCCCATCTTTTTAACCTGTTCAGATTGTATCTACTAAAA  749

seq1  TTATTTGTTTGTTAGTTGGTTGGTTTTTCTCTTAAACTCTAGACATATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGTTAGTTGGTTGGTTTTTCTCTTAAACTCTAGACATATTC  799

seq1  TTTCCTTGCCCTCATTTCACTGAGAAAAAATTGAAACATCATCAGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGCCCTCATTTCACTGAGAAAAAATTGAAACATCATCAGAACAG  849

seq1  AGCTCACACATTTCACTATTTTATGTCACCTGCAGGCATCTATAGCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACACATTTCACTATTTTATGTCACCTGCAGGCATCTATAGCCACT  899

seq1  TCTTCTGATCCCCGTTTTCTTTCTAGCCATCTTTGCAGTTTTTGAAGACT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTCTGATCCCCGTTTTCTTTCTAGCCATCTTTGCAG-TTTTGAAGACT  948

seq1  TTTTACAG-AAAAATATTCCTGGACTTCCTTTCTTTTATTCTTTATCACC  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAAAAAATATTCCTGGACTTCCTTTCTTTTATTCTTTATCACC  998

seq1  CATCCTTTCTTGCACACA-CTCAGAAAGCAATAGCTATTCCCCAGGGACT  1048
      ||| ||||| |||||||| |||||||||| ||||||| |||||| |||||
seq2  CAT-CTTTC-TGCACACACCTCAGAAAGC-ATAGCTA-TCCCCA-GGACT  1043

seq1  GCCTTACCAAGTTACAGGTG  1068
      |||||| |||||||||||||
seq2  GCCTTA-CAAGTTACAGGTG  1062


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