BAC Information

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BAC

Clone NameB6Ng01-310O03
Chromosome1 (Build37)
Map Location 111,484,724 - 111,617,883
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310O03.bB6Ng01-310O03.g
ACCGA102741GA102742
length9771,163
definitionB6Ng01-310O03.b B6Ng01-310O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,484,724 - 111,485,540)(111,616,721 - 111,617,883)
sequence
gaattcctgatctttccaagacttttatcatgaaggtgtgttagattgta
ggttcaattatattttattgtttgtttgtttggttggttgtttggttggt
ttttttgagacagggtttctctgtgtagccctggctgtcctagaactcac
tctgtagaccaggatggcctggaactaagaaatccacctgcctctgcctc
ccaagtgctgggattaaaggcagactccaccactgcccaactaggttcaa
agtttgaacctaagatagcaaactcctatcctgaaatttcaaaagttata
cattgtttagggatctgaaaactcaactgaaggcaattcaattctaccac
tagcaatgaaaggtggctagttcatattttgtatcctccattacaatgaa
tcctcactaggggtaagaaaggaagaagtttttggaagttttcactcaac
tggatttccacagaaccccctacctcaaagctacccaggtccaacagttt
ctaactacacactcttttccattttcccctgcctgaaccctcccactctt
gtcctagtaaacctgcaatatttatcctatttccccttaccaggaagttc
catgcatccctaatagaggcctcctcattacctaaccacactgtttctat
gaatgatagcttgattttcatttacttaacagataatatccactaacaag
tgaatacatatcatatttatatttctgggtcttggttacctcactcatac
ttttttttttatagttccattcacttgctttcaatttgcaatgatgatgt
catttatttctctttcattctttttctttctttctttctttctttctttc
tttctttctttctttccttccttctttccttttttctcattttcttttct
tttttgcttttactttcttctgttgttttttgtttgttgtttctttaatt
tccagacagggattctctgtgtagccc

gaattcaatcagggctggggagagcactaactggtgttccagtagactgg
cttacattcccaaaaccatcgtggcttctgaattcaaagaaggatcaaag
gtcctcttttgacctccttgggcaatgcatacaggttgtacacacacatg
aaggcaaagcaccaatttctatacaataaaaacaaaacaaaacaaaaaaa
aaaaaagccaaaccaaaaccaaaacaaaacaaaacaaaacaaaaactcaa
ataactatttaattttttaatgtatttgacaaatactaggaaacaaatac
ctacattgtttcttttttaggctaacaattcagctttgttccaaaggcat
atatgtttctgcttattttgttccagttcctgcaactcgggattaaggta
aaataaataaataaataaataaaaccacttctaataaattgagaaggaaa
gaaaagatatgtgttcctgacctatgaaagaaagtaccttatcacatgat
gttttgagtcataaatatagtggtttgttattgtactactttctcattat
gctgtgacccacaaaaataacaaaaacattcttttgtttgttttgttttt
gtatgtatgtatgtatgtatgtatatatgtacatatgtatttattcattc
atttatttatttatttatttatttatttatttatttatttatttattttt
gatacagggtttctctgtatagccctggctgtcctggaactcactctgta
gaccaggctggcctcgaactcagaaatccacctgcctctacctcccgagt
gctgggattaaaggcgtgcgccaccacgcccagctccacaaaaacattct
tgtcatcaaaataatttccaagaggaatgtcctttccttttaaacattgc
cttaatttccctttactctttaatcttctataattacattgatcaacttg
acacttctttataactctgcatcataggagtaagtgatatagatagataa
acttgtgcaccaagaaacatgaaataattcccagaagcatcaaagtaatg
gctgcatgcagtgcctccttgaaatgtcttacaaattttacacttccact
gggacttctagtaattatgggcaagttttagtcagatttttcttcttact
ggaagaagaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111484724_111485540
seq2: B6Ng01-310O03.b_46_863

seq1  GAATTCCTGATCTTTCCAAGACTTTTATCATGAAGGTGTGTTAGATTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTATCATGAAGGTGTGTTAGATTGTA  50

seq1  GGTTCAATTATATTTTATTGTTTGTTTGTTTGGTTGGTTGTTTGGTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTATATTTTATTGTTTGTTTGTTTGGTTGGTTGTTTGGTTGGT  100

seq1  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCAC  150

seq1  TCTGTAGACCAGGATGGCCTGGAACTAAGAAATCCACCTGCCTCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGATGGCCTGGAACTAAGAAATCCACCTGCCTCTGCCTC  200

seq1  CCAAGTGCTGGGATTAAAGGCAGACTCCACCACTGCCCAACTAGGTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGATTAAAGGCAGACTCCACCACTGCCCAACTAGGTTCAA  250

seq1  AGTTTGAACCTAAGATAGCAAACTCCTATCCTGAAATTTCAAAAGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAACCTAAGATAGCAAACTCCTATCCTGAAATTTCAAAAGTTATA  300

seq1  CATTGTTTAGGGATCTGAAAACTCAACTGAAGGCAATTCAATTCTACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTAGGGATCTGAAAACTCAACTGAAGGCAATTCAATTCTACCAC  350

seq1  TAGCAATGAAAGGTGGCTAGTTCATATTTTGTATCCTCCATTACAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGAAAGGTGGCTAGTTCATATTTTGTATCCTCCATTACAATGAA  400

seq1  TCCTCACTAGGGGTAAGAAAGGAAGAAGTTTTTGGAAGTTTTCACTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTAGGGGTAAGAAAGGAAGAAGTTTTTGGAAGTTTTCACTCAAC  450

seq1  TGGATTTCCACAGAACCCCCTACCTCAAAGCTACCCAGGTCCAACAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCACAGAACCCCCTACCTCAAAGCTACCCAGGTCCAACAGTTT  500

seq1  CTAACTACACACTCTTTTCCATTTTCCCCTGCCTGAACCCTCCCACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACACACTCTTTTCCATTTTCCCCTGCCTGAACCCTCCCACTCTT  550

seq1  GTCCTAGTAAACCTGCAATATTTATCCTATTTCCCCTTACCAGGAAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGTAAACCTGCAATATTTATCCTATTTCCCCTTACCAGGAAGTTC  600

seq1  CATGCATCCCTAATAGAGGCCTCCTCATTACCTAACCACACTGTTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCCCTAATAGAGGCCTCCTCATTACCTAACCACACTGTTTCTAT  650

seq1  GAATGATAGCTTGATTTTCATTTACTTAACAGATAATATCCACTAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATAGCTTGATTTTCATTTACTTAACAGATAATATCCACTAACAAG  700

seq1  TGAATACATATCATATTTATATTTCTGGGTCTTGGTTACCTCACTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACATATCATATTTATATTTCTGGGTCTTGGTTACCTCACTCATAC  750

seq1  -TTTTTTTTTATAGTTCCATTCACTTGCTTTCAATTTGCAATGATGATGT  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTATAGTTCCATTCACTTGCTTTCAATTTGCAATGATGATGT  800

seq1  CATTTATTTCTCTTTCAT  817
      ||||||||||||||||||
seq2  CATTTATTTCTCTTTCAT  818


seq1: chr1_111616721_111617883
seq2: B6Ng01-310O03.g_67_1229 (reverse)

seq1  TTATTCTTCTTCCAGTAAAAAAAAAAAAATCTTAATTTAAAAC-TACCCT  49
      ||||||||||||||||  || || |||||||| |   |||||| | ||| 
seq2  TTATTCTTCTTCCAGT--AAGAAGAAAAATCTGA--CTAAAACTTGCCCA  46

seq1  TAA-TACTATGAAGTTCACAGTGAAAGTGTAAAA-TTGTAAGACATTTTC  97
      ||| ||||| |||| || ||||| |||||||||| |||||||||||||  
seq2  TAATTACTA-GAAG-TCCCAGTGGAAGTGTAAAATTTGTAAGACATTT--  92

seq1  CAAGGA-GCACTGCATGCAGCAATTACTTTGATGC-TCTGGGAAATATTT  145
      |||||| |||||||||||||| ||||||||||||| |||||||| |||||
seq2  CAAGGAGGCACTGCATGCAGCCATTACTTTGATGCTTCTGGGAATTATTT  142

seq1  CATGTTTCTT-GTGCACAAG-TTATCTATCTTATTCACTTACTCCTATGA  193
      |||||||||| ||||||||| ||||||||||   ||||||||||||||||
seq2  CATGTTTCTTGGTGCACAAGTTTATCTATCTATATCACTTACTCCTATGA  192

seq1  TGCAGAGTTAT-AAGAAGTGTCAAGTTGATCAATGTAATTATAGAAGATT  242
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTTATAAAGAAGTGTCAAGTTGATCAATGTAATTATAGAAGATT  242

seq1  AAAGAGTAAAGGGAAATTAAGGCAATGTTTAAAAGGAAAGGACATTCCTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAAAGGGAAATTAAGGCAATGTTTAAAAGGAAAGGACATTCCTC  292

seq1  TTGGAAATTATTTTGATGACAAGAATGTTTTTGTGGAGCTGGGCGTGGTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATTATTTTGATGACAAGAATGTTTTTGTGGAGCTGGGCGTGGTG  342

seq1  GCGCACGCCTTTAATCCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTCT  392

seq1  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  442

seq1  TATACAGAGAAACCCTGTATCAAAAATAAATAAATAAATAAATAAATAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTATCAAAAATAAATAAATAAATAAATAAATAAA  492

seq1  TAAATAAATAAATAAATAAATGAATGAATAAATACATATGTACATATATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATGAATGAATAAATACATATGTACATATATA  542

seq1  CATACATACATACATACATACAAAAACAAAACAAACAAAAGAATGTTTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACAAAAACAAAACAAACAAAAGAATGTTTTT  592

seq1  GTTATTTTTGTGGGTCACAGCATAATGAGAAAGTAGTACAATAACAAACC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTGTGGGTCACAGCATAATGAGAAAGTAGTACAATAACAAACC  642

seq1  ACTATATTTATGACTCAAAACATCATGTGATAAGGTACTTTCTTTCATAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTATGACTCAAAACATCATGTGATAAGGTACTTTCTTTCATAG  692

seq1  GTCAGGAACACATATCTTTTCTTTCCTTCTCAATTTATTAGAAGTGGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAACACATATCTTTTCTTTCCTTCTCAATTTATTAGAAGTGGTTT  742

seq1  TATTTATTTATTTATTTATTTTACCTTAATCCCGAGTTGCAGGAACTGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTTACCTTAATCCCGAGTTGCAGGAACTGGA  792

seq1  ACAAAATAAGCAGAAACATATATGCCTTTGGAACAAAGCTGAATTGTTAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAGCAGAAACATATATGCCTTTGGAACAAAGCTGAATTGTTAG  842

seq1  CCTAAAAAAGAAACAATGTAGGTATTTGTTTCCTAGTATTTGTCAAATAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAAGAAACAATGTAGGTATTTGTTTCCTAGTATTTGTCAAATAC  892

seq1  ATTAAAAAATTAAATAGTTATTTGAGTTTTTGTTTTGTTTTGTTTTGTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATTAAATAGTTATTTGAGTTTTTGTTTTGTTTTGTTTTGTTT  942

seq1  TGGTTTTGGTTTGGCTTTTTTTTTTTTTGTTTTGTTTTGTTTTTATTGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGGTTTGGCTTTTTTTTTTTTTGTTTTGTTTTGTTTTTATTGTA  992

seq1  TAGAAATTGGTGCTTTGCCTTCATGTGTGTGTACAACCTGTATGCATTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTGGTGCTTTGCCTTCATGTGTGTGTACAACCTGTATGCATTGC  1042

seq1  CCAAGGAGGTCAAAAGAGGACCTTTGATCCTTCTTTGAATTCAGAAGCCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGGTCAAAAGAGGACCTTTGATCCTTCTTTGAATTCAGAAGCCA  1092

seq1  CGATGGTTTTGGGAATGTAAGCCAGTCTACTGGAACACCAGTTAGTGCTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTTTGGGAATGTAAGCCAGTCTACTGGAACACCAGTTAGTGCTC  1142

seq1  TCCCCAGCCCTGATTGAATTC  1163
      |||||||||||||||||||||
seq2  TCCCCAGCCCTGATTGAATTC  1163


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