BAC Information

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BAC

Clone NameB6Ng01-311A20
Chromosome1 (Build37)
Map Location 143,183,750 - 143,356,998
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A20.bB6Ng01-311A20.g
ACCGA102865GA102866
length1,135866
definitionB6Ng01-311A20.b B6Ng01-311A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,183,750 - 143,184,894)(143,356,486 - 143,356,998)
sequence
gaattctcagcttatactttagactcctcttccctctttcattttacaat
gatagggttttttttttttccaaaaaatacgagaatgtatgcacagatac
atatatactaaaaatgttatactttggggtggaaaaatggatcagtagtt
tatagcaatcgctcctctaacagaagacagtttttgtccccaggattaac
cttgtggcccacaactggtcaaaacttcagttccagtggatctttaacac
tctaatggcctcagcaggcaacaggcataaacatgaaattaaaaaaaatt
aaaaaattaaaagttatatgttgagtagtcagctaatacagtaatagtct
agtaagtgtgaaattgtcaggacatgctgggcctgggaattagaatgtaa
atgtatttttttgttgttggtttattgtcttgtatatggtctcactatat
aaccctggatggcttataactatgtagacattgctggccttgaactcata
cccatgtacctgtctttccatcctaagttggaattaaagatgccatatac
ctttaattcacatacagaaaatgacctgatttttatataacatacttgag
gcacaattatttctcgagaaatccttggtttattatactatttaggaggt
attgttataacactttaaataaaattaactgatatttgtacatcactgtc
cttcagggatgtcaaaaattaattgtgaatatatatgcatctccaacaca
catttttctttttcttttattgaaagtagattagtttttcttacaaatac
attctgattatcatttctcctctccctataccttcaagttcttcccaacc
ttctctgctctagatccactctctttctgtctctcattataaaagaataa
ttttataagaataccaaatgggataaatttgatataattttattaagcta
aacactcacatgcagtcaatgaggccacccatcaagagagttcagacagc
acagcgtcaagcctgcttgttttcatactcagattctgataaattctaaa
ttaaaagtttattaaccacaataactgagagatctgctttaaccatgtta
tgccctgtgtttgctgttttacttccagtgaaatc
gaattccagttaaagacaggactggctctgccacagtcatgccctcagga
cagatcatccacaatccccccatctcgcaacccccagggtcagctctact
gtgaggttcaagtgatgtagagcctgttctaggtgacttggatcagaggt
ggtttgtttggggaaactggctctgccttttgtctgcttggtgctgatgt
agttgcgggagaaataccctccttccctccatagtatctgtccatttatg
gccggtagaattgccgatcctgggtttatgggaatagaagaattggccat
gtccctcactggctgcagcgctgggcaagcaggtcctacatctcacctgg
gcagcagggaaaagctagccctttttgaggggtttgctggtggaccaagt
ctgaaggagtttagaatgtgagagctgataggctgatctctgatacaccc
ccaagtccagacccaggactatgaattttcccatagccaataacctattt
atgaactactgtaggccatgaaggaagtagtcctacatatcgaaaaccac
agtatctccatgacacaatgcaatagcacaatatcctaaaggaatcccag
tgaggttcgagtattgatgtagtagcagaagccagaggcttcataatgga
ccaattagccgttgcaatgaacatctacaaagtttggacaaatggcaaga
ctgtgagacacactgtgacatgctacagattacacaagatttttttttct
atgttgggagggaagttacaaaggtgaaaggtaggtatgagtggaaagga
aagggagatgaatggggtttcaggcatgtgatgtggaattttcacctatc
acaaaaagttatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143183750_143184894
seq2: B6Ng01-311A20.b_43_1177

seq1  GAATTCTCAGCTTATACTTTAGACTCCTCTTCCCTCTTTCATTTTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTATACTTTAGACTCCTCTTCCCTCTTTCATTTTACAAT  50

seq1  GATAGGGTTTTTTTTTTTTCCAAAAAATACGAGAATGTATGCACAGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTTTTTTTTTTTTCCAAAAAATACGAGAATGTATGCACAGATAC  100

seq1  ATATATACTAAAAATGTTATACTTTGGGGTGGAAAAATGGATCAGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTAAAAATGTTATACTTTGGGGTGGAAAAATGGATCAGTAGTT  150

seq1  TATAGCAATCGCTCCTCTAACAGAAGACAGTTTTTGTCCCCAGGATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAATCGCTCCTCTAACAGAAGACAGTTTTTGTCCCCAGGATTAAC  200

seq1  CTTGTGGCCCACAACTGGTCAAAACTTCAGTTCCAGTGGATCTTTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCCCACAACTGGTCAAAACTTCAGTTCCAGTGGATCTTTAACAC  250

seq1  TCTAATGGCCTCAGCAGGCAACAGGCATAAACATGAAATTAAAAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGCCTCAGCAGGCAACAGGCATAAACATGAAATTAAAAAAAATT  300

seq1  AAAAAATTAAAAGTTATATGTTGAGTAGTCAGCTAATACAGTAATAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAAGTTATATGTTGAGTAGTCAGCTAATACAGTAATAGTCT  350

seq1  AGTAAGTGTGAAATTGTCAGGACATGCTGGGCCTGGGAATTAGAATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGTGAAATTGTCAGGACATGCTGGGCCTGGGAATTAGAATGTAA  400

seq1  ATGTATTTTTTTGTTGTTGGTTTATTGTCTTGTATATGGTCTCACTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTTTTGTTGTTGGTTTATTGTCTTGTATATGGTCTCACTATAT  450

seq1  AACCCTGGATGGCTTATAACTATGTAGACATTGCTGGCCTTGAACTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGATGGCTTATAACTATGTAGACATTGCTGGCCTTGAACTCATA  500

seq1  CCCATGTACCTGTCTTTCCATCCTAAGTTGGAATTAAAGATGCCATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTACCTGTCTTTCCATCCTAAGTTGGAATTAAAGATGCCATATAC  550

seq1  CTTTAATTCACATACAGAAAATGACCTGATTTTTATATAACATACTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCACATACAGAAAATGACCTGATTTTTATATAACATACTTGAG  600

seq1  GCACAATTATTTCTCGAGAAATCCTTGGTTTATTATACTATTTAGGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATTATTTCTCGAGAAATCCTTGGTTTATTATACTATTTAGGAGGT  650

seq1  ATTGTTATAACACTTTAAATAAAATTAACTGATATTTGTACATCACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATAACACTTTAAATAAAATTAACTGATATTTGTACATCACTGTC  700

seq1  CTTCAGGGATGTCAAAAATTAATTGTGAATATATATGCATCTCCAACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGATGTCAAAAATTAATTGTGAATATATATGCATCTCCAACACA  750

seq1  CATTTTTCTTTTTCTTTTATTGAAAGTAGATTAGTTTTTCTTACAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTTTTCTTTTATTGAAAGTAGATTAGTTTTTCTTACAAATAC  800

seq1  ATTCTGATTATCATTTCTCCTCTCCCTATACCTTCAAGTTCTTCCCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTATCATTTCTCCTCTCCCTATACCTTCAAGTTCTTCCCAACC  850

seq1  TTCTCTGCTCTAGATCCACTCTCTTTCTGTCTCTCATTATAAAAGAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTCTAGATCCACTCTCTTTCTGTCTCTCATTATAAAAGAATAA  900

seq1  TTTTATAAGAAATACCAAATGGGATAAAATTTGATATAATTTTATTAAGC  950
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTATAAG-AATACCAAATGGGAT-AAATTTGATATAATTTTATTAAGC  948

seq1  TAAACACTCACAATGCAGTTCAATGAGGCCACCCATCAAGAGGAGTTCCA  1000
      ||||||||||| |||||| |||||||||||||||||||||| ||||||  
seq2  TAAACACTCAC-ATGCAG-TCAATGAGGCCACCCATCAAGA-GAGTTC--  993

seq1  AGACAAGGCACAAGCGTCAAGCCTGCTTGTTTTCATACTCAGGATTCTGA  1050
      |||||  |||| ||||||||||||||||||||||||||||| ||||||||
seq2  AGACA--GCAC-AGCGTCAAGCCTGCTTGTTTTCATACTCA-GATTCTGA  1039

seq1  TAAAATTTCTAAATTAAAAG-TTAT--AACACA--TACTGAGAGGATCTG  1095
      ||||  |||||||||||||| ||||  | ||||   ||||||| ||||||
seq2  TAAA--TTCTAAATTAAAAGTTTATTAACCACAATAACTGAGA-GATCTG  1086

seq1  GTTTAAACCCATG-TATGCCCTGTGTTTGCTGTTTTAATCTCTGTGAAAT  1144
       |||||  ||||| ||||||||||||||||||||||| |  | |||||||
seq2  CTTTAA--CCATGTTATGCCCTGTGTTTGCTGTTTTACTTCCAGTGAAAT  1134

seq1  C  1145
      |
seq2  C  1135

seq1: chr1_143356486_143356998
seq2: B6Ng01-311A20.g_66_578 (reverse)

seq1  TACAGTAGTTCATAAATAGGTTATTGGCTATGGGAAAATTCATAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGTTCATAAATAGGTTATTGGCTATGGGAAAATTCATAGTCCTG  50

seq1  GGTCTGGACTTGGGGGTGTATCAGAGATCAGCCTATCAGCTCTCACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGACTTGGGGGTGTATCAGAGATCAGCCTATCAGCTCTCACATTC  100

seq1  TAAACTCCTTCAGACTTGGTCCACCAGCAAACCCCTCAAAAAGGGCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTTCAGACTTGGTCCACCAGCAAACCCCTCAAAAAGGGCTAGC  150

seq1  TTTTCCCTGCTGCCCAGGTGAGATGTAGGACCTGCTTGCCCAGCGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTGCTGCCCAGGTGAGATGTAGGACCTGCTTGCCCAGCGCTGCA  200

seq1  GCCAGTGAGGGACATGGCCAATTCTTCTATTCCCATAAACCCAGGATCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAGGGACATGGCCAATTCTTCTATTCCCATAAACCCAGGATCGG  250

seq1  CAATTCTACCGGCCATAAATGGACAGATACTATGGAGGGAAGGAGGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTACCGGCCATAAATGGACAGATACTATGGAGGGAAGGAGGGTAT  300

seq1  TTCTCCCGCAACTACATCAGCACCAAGCAGACAAAAGGCAGAGCCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCGCAACTACATCAGCACCAAGCAGACAAAAGGCAGAGCCAGTTT  350

seq1  CCCCAAACAAACCACCTCTGATCCAAGTCACCTAGAACAGGCTCTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACAAACCACCTCTGATCCAAGTCACCTAGAACAGGCTCTACATC  400

seq1  ACTTGAACCTCACAGTAGAGCTGACCCTGGGGGTTGCGAGATGGGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACCTCACAGTAGAGCTGACCCTGGGGGTTGCGAGATGGGGGGAT  450

seq1  TGTGGATGATCTGTCCTGAGGGCATGACTGTGGCAGAGCCAGTCCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGATCTGTCCTGAGGGCATGACTGTGGCAGAGCCAGTCCTGTCT  500

seq1  TTAACTGGAATTC  513
      |||||||||||||
seq2  TTAACTGGAATTC  513