BAC Information

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BAC

Clone NameB6Ng01-311E14
Chromosome1 (Build37)
Map Location 172,682,177 - 172,821,875
singlet/doubletdoublet
Overlap geneAtf6, Dusp12
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311E14.bB6Ng01-311E14.g
ACCGA103043GA103044
length1,0411,139
definitionB6Ng01-311E14.b B6Ng01-311E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,820,825 - 172,821,875)(172,682,177 - 172,683,304)
sequence
gaattctgttcttgaagaggcttttaaaggagcattgtataggcttgctt
ctgggaaaggggtactaggaactgataagtggtcttagaacacaagaaag
ttgggttgaaggtatagttcagtagccatttgtaacaactttcagaaaaa
aaaatcataaagttgttacagtttttttttctgcaggtggtctgctcact
caccagattgtctgccagctaggtaagattagatgttggagaaacctttc
tcattccctctacttcctaactagctcttctgcctcattaacattagaat
atgagaaatctagaaactttcctttttttctagtgatactattgctttcc
ttttattgaaaatggatttttttctcacataacatatgccaatcctccta
cctggatctacccccttcttgtctctctctttagaaaacaaacaacaaca
acaaaaaaaacaacaacaaaataaaacaaaaagccgggcgtggtggcaca
tgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagtt
cgaggccagcctggtctacaaagtgagttccaggtcagccagggctacac
agagacagcctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaccttcta
agaaataataatataataaaatataataaaacaaaagctaacatattgaa
ataggacaaaacaaacagaaagaagagatcccaagaagaggcacaaggac
agacacagatgcagagactcactcatttgcatactgtagggtaaaaagag
agcaaaataaataagtgaaataataagattaaaaaccaaacaaacagctg
ggcagtggtggcaaacaccttaattccagcacttgggatctctgagttca
agccatcctggtctacagagtgaattccaggacagccagggctacacagg
agagccctggctcagaaatcatcatcatcatcatcatcactacacagaaa
aaaaaaaaaaaaccctgacatgatgttatgatgtaagcgca
gaattctcagtcagcaaaggcttcaagtacagcaccaagcagctctcctg
cattgggatgacccgctgggaaccagaggtttgcgtatcaggccaacact
gacaacaacgacctcttaacatttcatacgtggcctatatccactgaatt
cctgagatggcttgtttttcaaatatggaaaccagattgaaaacaaaaca
aacaaacaaacaaaaaaccaaccaacatccatccttattctaaaaccagc
tctgtgttttctctaacttccatctccggacgctttagttttctactgtc
acaatatatctcttcctctgcccaactatctttcaagctgccaaatctca
aaaatgaatgagccagagcagcagtcaggagtgggcatgtcaaagttact
gcttaaatccacaacatttgcaactaatactgttttcctgtagttacata
aactgttgattagaaacccgaagtgtctactcactgaagaaataattagg
aaatttgaattcatcaaaatatataaacacacataataaaataccatgaa
aacaaaaattgcaagaaaaaaattagaggtagtaaaattaagtggaatgt
cgtcatgcaaagccccttccctaacgtagagctgctcaccataataaaaa
cataagcaaatacattcattactcatcccccaaatagacacagtcagtag
aaatagctaaaatgaatgtggtatttgtgccactaatgtatgcaataaaa
ctacagaccaaacaacaggaaaaattaaaaaaataaatctgcaccactaa
tatgtatcagggagacaaagaataaatcaaaaccattagtgtacaacaga
tggcccaagaaggagccaacattttctatttctgacaagagcaaaaattt
gacatgtaatgcaatctttgacaattctggcaaggtcaccatgaaaaatg
agtttgaaattccaataaggtcaaacaggttgcccttggaattatgattc
ctatatcagacttctgtagaaagctccccaaatgttcatgtgcctgtgca
ggcaacatggccagtatgggtaacagaagcacaggaagcattagttccag
cttagctgacttcccacccttccctctccttatgcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172820825_172821875
seq2: B6Ng01-311E14.b_45_1085 (reverse)

seq1  TGCGCTTTACATCATAACATCATGTCAGGG-TTTTTTTTTTTTTTCTGTT  49
      ||||| |||||||||||||||||||||||| ||||||||||||||||| |
seq2  TGCGC-TTACATCATAACATCATGTCAGGGTTTTTTTTTTTTTTTCTG-T  48

seq1  GTAGGTGATTGATTGATTGATTGATTGATTGATTTTCTGAGCCAGGGCTT  99
      ||| |||| ||| ||| ||| ||| ||| ||| |||||||||||||||| 
seq2  GTA-GTGA-TGA-TGA-TGA-TGA-TGA-TGA-TTTCTGAGCCAGGGCTC  90

seq1  CTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGATGGC  149
        ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGATGG-  139

seq1  CTTGAACTCAGAGATCCCAAGTGCTGGAATTAAGGTGTTTGCCACCACTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAGATCCCAAGTGCTGGAATTAAGGTGTTTGCCACCACTG  189

seq1  CCCAGCTGTTTGTTTGGTTTTTAATCTTATTATTTCACTTATTTATTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTTTGTTTGGTTTTTAATCTTATTATTTCACTTATTTATTTTG  239

seq1  CTCTCTTTTTACCCTACAGTATGCAAATGAGTGAGTCTCTGCATCTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTTACCCTACAGTATGCAAATGAGTGAGTCTCTGCATCTGTGT  289

seq1  CTGTCCTTGTGCCTCTTCTTGGGATCTCTTCTTTCTGTTTGTTTTGTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTGTGCCTCTTCTTGGGATCTCTTCTTTCTGTTTGTTTTGTCCT  339

seq1  ATTTCAATATGTTAGCTTTTGTTTTATTATATTTTATTATATTATTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATATGTTAGCTTTTGTTTTATTATATTTTATTATATTATTATTT  389

seq1  CTTAGAAGGTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGCTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGCTGTCT  439

seq1  CTGTGTAGCCCTGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCCT  489

seq1  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  539

seq1  CATGTGCCACCACGCCCGGCTTTTTGTTTTATTTTGTTGTTGTTTTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACCACGCCCGGCTTTTTGTTTTATTTTGTTGTTGTTTTTTTT  589

seq1  GTTGTTGTTGTTTGTTTTCTAAAGAGAGAGACAAGAAGGGGGTAGATCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTGTTTTCTAAAGAGAGAGACAAGAAGGGGGTAGATCCA  639

seq1  GGTAGGAGGATTGGCATATGTTATGTGAGAAAAAAATCCATTTTCAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGATTGGCATATGTTATGTGAGAAAAAAATCCATTTTCAATAA  689

seq1  AAGGAAAGCAATAGTATCACTAGAAAAAAAGGAAAGTTTCTAGATTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCAATAGTATCACTAGAAAAAAAGGAAAGTTTCTAGATTTCTC  739

seq1  ATATTCTAATGTTAATGAGGCAGAAGAGCTAGTTAGGAAGTAGAGGGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAATGTTAATGAGGCAGAAGAGCTAGTTAGGAAGTAGAGGGAAT  789

seq1  GAGAAAGGTTTCTCCAACATCTAATCTTACCTAGCTGGCAGACAATCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTTTCTCCAACATCTAATCTTACCTAGCTGGCAGACAATCTGG  839

seq1  TGAGTGAGCAGACCACCTGCAGAAAAAAAAACTGTAACAACTTTATGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGCAGACCACCTGCAGAAAAAAAAACTGTAACAACTTTATGATT  889

seq1  TTTTTTTCTGAAAGTTGTTACAAATGGCTACTGAACTATACCTTCAACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGAAAGTTGTTACAAATGGCTACTGAACTATACCTTCAACCC  939

seq1  AACTTTCTTGTGTTCTAAGACCACTTATCAGTTCCTAGTACCCCTTTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTGTGTTCTAAGACCACTTATCAGTTCCTAGTACCCCTTTCCC  989

seq1  AGAAGCAAGCCTATACAATGCTCCTTTAAAAGCCTCTTCAAGAACAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGCCTATACAATGCTCCTTTAAAAGCCTCTTCAAGAACAGAAT  1039

seq1  TC  1051
      ||
seq2  TC  1041

seq1: chr1_172682177_172683304
seq2: B6Ng01-311E14.g_67_1205

seq1  GAATTCTCAGTCAGCAAAGGCTTCAAGTACAGCACCAAGCAGCTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCAGCAAAGGCTTCAAGTACAGCACCAAGCAGCTCTCCTG  50

seq1  CATTGGGATGACCCGCTGGGAACCAGAGGTTTGCGTATCAGGCCAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGATGACCCGCTGGGAACCAGAGGTTTGCGTATCAGGCCAACACT  100

seq1  GACAACAACGACCTCTTAACATTTCATACGTGGCCTATATCCACTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAACGACCTCTTAACATTTCATACGTGGCCTATATCCACTGAATT  150

seq1  CCTGAGATGGCTTGTTTTTCAAATATGGAAACCAGATTGAAAACAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGGCTTGTTTTTCAAATATGGAAACCAGATTGAAAACAAAACA  200

seq1  AACAAACAAACAAAAAACCAACCAACATCCATCCTTATTCTAAAACCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAACCAACCAACATCCATCCTTATTCTAAAACCAGC  250

seq1  TCTGTGTTTTCTCTAACTTCCATCTCCGGACGCTTTAGTTTTCTACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTCTCTAACTTCCATCTCCGGACGCTTTAGTTTTCTACTGTC  300

seq1  ACAATATATCTCTTCCTCTGCCCAACTATCTTTCAAGCTGCCAAATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATCTCTTCCTCTGCCCAACTATCTTTCAAGCTGCCAAATCTCA  350

seq1  AAAATGAATGAGCCAGAGCAGCAGTCAGGAGTGGGCATGTCAAAGTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATGAGCCAGAGCAGCAGTCAGGAGTGGGCATGTCAAAGTTACT  400

seq1  GCTTAAATCCACAACATTTGCAACTAATACTGTTTTCCTGTAGTTACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATCCACAACATTTGCAACTAATACTGTTTTCCTGTAGTTACATA  450

seq1  AACTGTTGATTAGAAACCCGAAGTGTCTACTCACTGAAGAAATAATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGATTAGAAACCCGAAGTGTCTACTCACTGAAGAAATAATTAGG  500

seq1  AAATTTGAATTCATCAAAATATATAAACACACATAATAAAATACCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAATTCATCAAAATATATAAACACACATAATAAAATACCATGAA  550

seq1  AACAAAAATTGCAAGAAAAAAATTAGAGGTAGTAAAATTAAGTGGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATTGCAAGAAAAAAATTAGAGGTAGTAAAATTAAGTGGAATGT  600

seq1  CGTCATGCAAAGCCTATTAAATAACGTAGAGCTGCTCACCATAATAAAAA  650
      ||||||||||||||  ||   |||||||||||||||||||||||||||||
seq2  CGTCATGCAAAGCCCCTTCCCTAACGTAGAGCTGCTCACCATAATAAAAA  650

seq1  CATAAGCAAATACATTCATTACTCATCCCCCAAATAGACACAGTCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAAATACATTCATTACTCATCCCCCAAATAGACACAGTCAGTAG  700

seq1  AAATAGCTAAAATGAATGTGGTATTTGTGCCACTAATGTATGCAATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTAAAATGAATGTGGTATTTGTGCCACTAATGTATGCAATAAAA  750

seq1  CTACAGACCAAACAACAGGAAAAATTAAAAAAATAAATCTGCACCACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACCAAACAACAGGAAAAATTAAAAAAATAAATCTGCACCACTAA  800

seq1  TATGTATCAGGGAGACAAAGAATAAATCAAAACCATTAGTGTACAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCAGGGAGACAAAGAATAAATCAAAACCATTAGTGTACAACAGA  850

seq1  TGGCCCAAGAAGGAGCCAACA-TTTCTA-TTCTGACAAGAGCAAAAATTT  898
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TGGCCCAAGAAGGAGCCAACATTTTCTATTTCTGACAAGAGCAAAAATTT  900

seq1  GACATGTAATGCAATC-TTGACAATTCTGGCAAGGTCACCATGAAAAATG  947
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACATGTAATGCAATCTTTGACAATTCTGGCAAGGTCACCATGAAAAATG  950

seq1  AGTTTGAAATTCCAATAAGGTCAAACAAGTTTGCCTTGGAA-TATGATTC  996
      ||||||||||||||||||||||||||| |||  |||||||| ||||||||
seq2  AGTTTGAAATTCCAATAAGGTCAAACAGGTTGCCCTTGGAATTATGATTC  1000

seq1  TTATATCAGAC-TCTGTAGAAAGCTCCCCAAATG-TCATGTGGCTGTGCA  1044
       |||||||||| |||||||||||||||||||||| ||||||| |||||||
seq2  CTATATCAGACTTCTGTAGAAAGCTCCCCAAATGTTCATGTGCCTGTGCA  1050

seq1  GGCAACATGG-CAGTATGGGT-ACAG-AGCACAAGGAAGCAATAG-TCCA  1090
      |||||||||| |||||||||| |||| ||||| |||||||| ||| ||||
seq2  GGCAACATGGCCAGTATGGGTAACAGAAGCAC-AGGAAGCATTAGTTCCA  1099

seq1  GC-TAGCTGACCTTCCCACCC-TCCCTCT-CTTATTCCCAT  1128
      || ||||||| |||||||||| ||||||| ||||| |||||
seq2  GCTTAGCTGA-CTTCCCACCCTTCCCTCTCCTTATGCCCAT  1139