BAC Information

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BAC

Clone NameB6Ng01-311E23
Chromosome1 (Build37)
Map Location 92,356,923 - 92,512,850
singlet/doubletdoublet
Overlap geneCops8
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311E23.bB6Ng01-311E23.g
ACCGA103061GA103062
length1,1421,135
definitionB6Ng01-311E23.b B6Ng01-311E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,356,923 - 92,358,073)(92,511,741 - 92,512,850)
sequence
gaattcattctcaaatttttcttccaaggattgagaaaataaaaagctgg
aaaattaatcaacaggaaaataacgacaaatgataatgttcttaaataat
cataacatgaagaaagaaagaaagaaaagaagacataaaatgaaacactg
gaagcaaacagttgtcccaagcaggaagaacacagcaggagcagctctgt
gtcctcagtgtccctgagtagtaagtaagtcacaagatcatgtcagtaga
tgtggggactcccgggcgcgttcagtactcatgcgtgatagaaaacaaca
ctgagaaaatggtgaggaaaagcaacgttctttttttactagttttttga
gagtttcatacaacatgtttaaatcatgccactccacctcgtgtcccccc
tgcacccacccccaacaacatccttaacttgttcaaagatgggtcagccg
gaaacgctgcatttgcatagcaaatacaagaagagcttacttgaacaaag
ggcagaaagtactctggattccgtgttcctgcactagaacccagagactc
tcaagcaaggagggaaagatgtctctttctaccccctccctcaaactcaa
actaaataaatcctaagaagaaagtgttttaaaacatctttatgactact
tcccagcaacaatcaatttttaaaaaaatcacttgtaaaattgcagccaa
taacacatcaaggcttacaataatctggaaataaatcttacaaaatatga
caagggcttttattgagaaattctaactggatttttttctaaaagctaaa
taaatggaagtgcactgtgggtttacaagtgggatggcctcatagagata
tcaaaccgcccgaggttgacttatgaagtccatgaaattctagtcaaagc
cccacagagcacttaatgagtctgacttgctttatcataaaatccatatg
gagcataaagggataagagatggggacatggtctgagaagagaggaggga
gaactggttatgtatccagttttattaacatatactatttgacagggtgg
tattcttattgcgggatgaaccgggcatcacagacatccagttcagcttc
catagcttgttctccatctgcattcattctacgagtctctga
gaattctatccccagctcgtcaaccatttcagtgtcactgagctcattga
tggaagttatgatctctcggaagtctcatgtttatcttgctcttttatgg
tgtgtgtatgtgtgtgtgtgtgtttctgtgtttcaacttgcaactgttgt
atttggttatctcttctggatttggacatcttctccattagcaaccaaca
ctggagggatcactatccagagtcactcaaaagggagacaagcacttggt
gccacatcaacacaaaactcgtaagagctagaaacacactcaaaattgat
cattaatataaaacatcagccaatacgtaacagaaggcctcagaacagaa
aacaggcaagacataatgaactacggcatgaagtcaaaatctggggcaaa
tggggtaaatgaaggaaataagagcagagaaaagaaatcatgaagcagaa
gcagacaggaaactaaggtgggctggaaaggggaaagagagtgaggtaag
aaccggtttcctatgacaaagagtgaacaaccttgacgaactagggggag
tgaaccaaaagtttttaaacaatgaagtctggggctggcgggatggcccc
gtggttaagagtatccacatagtctctcacaaccatctgcaactgcagtc
ccaagggatctggcatgacaccctcctccagcctccatgggtcctgcacc
tacacaatgtagtccatgcaggcacaactctccagtctctggcctgtgtg
ccaccccctgctccctttcggtgcttcatgtggtgctgtgctgacccgac
gtccgcttggagtttttctaagttctacctctggcttacagtcacactgc
caccccacccagcaacagaactccagggaaatgggctgctttagccgcaa
gcttaacatgggggtgtccttgtaagaaccactttgtaaggtaatcccct
tttcaaaagctcctaatgctgtcccccatccttctgaaaggggtccccgt
ccccaacagcttgaagctggtccagtgaatgaataagtctaacgagcagc
aatggtcaatctttatgaaatttctccttagactgtagactcttgccaac
ccatacatgcctaagttcccagcacagctttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92356923_92358073
seq2: B6Ng01-311E23.b_46_1187

seq1  GAATTCATTCTCAAATTTTTCTTCCAAGGATTGAGAAAATAAAAAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAAATTTTTCTTCCAAGGATTGAGAAAATAAAAAGCTGG  50

seq1  AAAATTAATCAACAGGAAAATAACGACAAATGATAATGTTCTTAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCAACAGGAAAATAACGACAAATGATAATGTTCTTAAATAAT  100

seq1  CATAACATGAAGAAAGAAAGAAAGAAAAGAAGACATAAAATGAAACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATGAAGAAAGAAAGAAAGAAAAGAAGACATAAAATGAAACACTG  150

seq1  GAAGCAAACAGTTGTCCCAAGCAGGAAGAACACAGCAGGAGCAGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACAGTTGTCCCAAGCAGGAAGAACACAGCAGGAGCAGCTCTGT  200

seq1  GTCCTCAGTGTCCCTGAGTAGTAAGTAAGTCACAAGATCATGTCAGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTGTCCCTGAGTAGTAAGTAAGTCACAAGATCATGTCAGTAGA  250

seq1  TGTGGGGACTCCCGGGCGCGTTCAGTACTCATGCGTGATAGAAAACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGACTCCCGGGCGCGTTCAGTACTCATGCGTGATAGAAAACAACA  300

seq1  CTGAGAAAATGGTGAGGAAAAGCAACGTTCTTTTTTTACTAGTTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATGGTGAGGAAAAGCAACGTTCTTTTTTTACTAGTTTTTTGA  350

seq1  GAGTTTCATACAACATGTTTAAATCATGCCACTCCACCTCGTGTCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCATACAACATGTTTAAATCATGCCACTCCACCTCGTGTCCCCCC  400

seq1  TGCACCCACCCCCAACAACATCCTTAACTTGTTCAAAGATGGGTCAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCACCCCCAACAACATCCTTAACTTGTTCAAAGATGGGTCAGCCG  450

seq1  GAAACGCTGCATTTGCATAGCAAATACAAGAAGAGCTTACTTGAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCTGCATTTGCATAGCAAATACAAGAAGAGCTTACTTGAACAAAG  500

seq1  GGCAGAAAGTACTCTGGATTCCGTGTTCCTGCACTAGAACCCAGAGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGTACTCTGGATTCCGTGTTCCTGCACTAGAACCCAGAGACTC  550

seq1  TCAAGCAAGGAGGGAAAGATGTCTCTTTCTACCCCCTCCCTCAAACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAGGAGGGAAAGATGTCTCTTTCTACCCCCTCCCTCAAACTCAA  600

seq1  ACTAAATAAATCCTAAGAAGAAAGTGTTTTAAAACATCTTTATGACTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAAATCCTAAGAAGAAAGTGTTTTAAAACATCTTTATGACTACT  650

seq1  TCCCAGCAACAATCAATTTTTAAAAAAATCACTTGTAAAATTGCAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAACAATCAATTTTTAAAAAAATCACTTGTAAAATTGCAGCCAA  700

seq1  TAACACATCAAGGCTTACAATAATCTGGAAATAAATCTTACAAAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATCAAGGCTTACAATAATCTGGAAATAAATCTTACAAAATATGA  750

seq1  CAAGGGCTTTTATTGAGAAATTCTAACTGGATTTTTTTCTAAAAGCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTTTATTGAGAAATTCTAACTGGATTTTTTTCTAAAAGCTAAA  800

seq1  TAAATGGAAGTGCACTGTGGGTTTACAAGTGGGATGGCCTCATAGAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAAGTGCACTGTGGGTTTACAAGTGGGATGGCCTCATAGAGATA  850

seq1  TCAAACCGCCCGAGGTTGACTTATGAAGTCCATGAAATTCTAGTCAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCGCCCGAGGTTGACTTATGAAGTCCATGAAATTCTAGTCAAAGC  900

seq1  CCCACAGAGCACTTAATGAGTCTGACTTGCTTTTATCATAAAATCCATAT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCACAGAGCACTTAATGAGTCTGACTTGC-TTTATCATAAAATCCATAT  949

seq1  GGAAGCATAAAGGGATAAGAAGAATGGGGACATGGTCTGAGGAAGGAAGA  1000
      || |||||||||||||||||   |||||||||||||||||     |||||
seq2  GG-AGCATAAAGGGATAAGA--GATGGGGACATGGTCTGA-----GAAGA  991

seq1  -AGGAGGGAG-ACTGGTTATGTATCCCAGTTTTA-TAACATTATACTAAT  1047
       ||||||||| ||||||||||||| ||||||||| ||||| |||||| ||
seq2  GAGGAGGGAGAACTGGTTATGTAT-CCAGTTTTATTAACA-TATACT-AT  1038

seq1  TTGAACAGGGTGGTAT--CTATGCAGAGATGGACACGGGCATCACAGACA  1095
      ||| ||||||||||||   |||   | |||| || |||||||||||||||
seq2  TTG-ACAGGGTGGTATTCTTATTGCGGGATGAAC-CGGGCATCACAGACA  1086

seq1  TCCCAGTCAGGCCTCCATAGCT--GTCT-CATCTGCATTCATCCCACCAG  1142
      | |||||   || |||||||||   ||| ||||||||||||| | ||  |
seq2  T-CCAGTTCAGCTTCCATAGCTTGTTCTCCATCTGCATTCATTCTAC--G  1133

seq1  AGTCTCTGA  1151
      |||||||||
seq2  AGTCTCTGA  1142

seq1: chr1_92511741_92512850
seq2: B6Ng01-311E23.g_67_1201 (reverse)

seq1  TTTTAAAGC--TGCT-GGCCCTAAGGCA-GTATGG--TTGCAAGAG-CTA  43
      |||||||||  |||| ||  || ||||| ||||||  | ||||||| |||
seq2  TTTTAAAGCTGTGCTGGGAACTTAGGCATGTATGGGTTGGCAAGAGTCTA  50

seq1  CAGTC--AAGAGAAA-TTCATAAAGATGACCCATTTGCTGCTCG-TAGGC  89
      |||||  | |||||| |||||||||||   ||| |||||||||| ||| |
seq2  CAGTCTAAGGAGAAATTTCATAAAGATTGACCA-TTGCTGCTCGTTAGAC  99

seq1  -TATCCA-TCACTGGA-CAGCCTCAACCTGT--GGGACGGGGACCCC-TT  133
       ||| || |||||||| |||| |||| ||||  |||||||||||||| ||
seq2  TTATTCATTCACTGGACCAGCTTCAAGCTGTTGGGGACGGGGACCCCTTT  149

seq1  CAGAAGGATGGGGGACAG-AATAGGAGCTTCTGGAAA-GGGATAACC-TA  180
      |||||||||||||||||| | ||||||||| || ||| ||||| ||| ||
seq2  CAGAAGGATGGGGGACAGCATTAGGAGCTTTTGAAAAGGGGATTACCTTA  199

seq1  CAAAGTGG-TCCTAC-AGGACA-CCCCATGTTAAAGCCTGC-GCT-AAGC  225
      |||||||| || ||| |||||| ||||||||| |||| ||| ||| ||||
seq2  CAAAGTGGTTCTTACAAGGACACCCCCATGTT-AAGCTTGCGGCTAAAGC  248

seq1  AGCCCATTTCCCTGGAGTTCTG-TGCTGGGTGGGGTGGCAGTGTGACTGT  274
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCCCATTTCCCTGGAGTTCTGTTGCTGGGTGGGGTGGCAGTGTGACTGT  298

seq1  AAGCCAGAGGTAGAACTTAGAAAAACTCCAAGCGGACGTCGGGTCAGCAC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGGTAGAACTTAGAAAAACTCCAAGCGGACGTCGGGTCAGCAC  348

seq1  AGCACCACATGAAGCACCG-AAGGGAGCAGGGGGTGGCACACAGGCCAGA  373
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCACCACATGAAGCACCGAAAGGGAGCAGGGGGTGGCACACAGGCCAGA  398

seq1  GACTGGAGAGTTGTGCCTGCATGGACTACATTGTGTAGGTGCAGGACCCA  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGTTGTGCCTGCATGGACTACATTGTGTAGGTGCAGGACCCA  448

seq1  TGGAGGCTGGAGGAGGGTGTCATGCCAGATCCCTTGGGACTGCAGTTGCA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGGAGGAGGGTGTCATGCCAGATCCCTTGGGACTGCAGTTGCA  498

seq1  GATGGTTGTGAGAGACTATGTGGATACTCTTAACCACGGGGCCATCCCGC  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGAGACTATGTGGATACTCTTAACCACGGGGCCATCCCGC  548

seq1  CAGCCCCAGACTTCATTGTTTAAAAACTTTTGGTTCACTCCCCCTAGTTC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGACTTCATTGTTTAAAAACTTTTGGTTCACTCCCCCTAGTTC  598

seq1  GTCAAGGTTGTTCACTCTTTGTCATAGGAAACCGGTTCTTACCTCACTCT  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTTGTTCACTCTTTGTCATAGGAAACCGGTTCTTACCTCACTCT  648

seq1  CTTTCCCCTTTCCAGCCCACCTTAGTTTCCTGTCTGCTTCTGCTTCATGA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTTTCCAGCCCACCTTAGTTTCCTGTCTGCTTCTGCTTCATGA  698

seq1  TTTCTTTTCTCTGCTCTTATTTCCTTCATTTACCCCATTTGCCCCAGATT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTCTGCTCTTATTTCCTTCATTTACCCCATTTGCCCCAGATT  748

seq1  TTGACTTCATGCCGTAGTTCATTATGTCTTGCCTGTTTTCTGTTCTGAGG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCATGCCGTAGTTCATTATGTCTTGCCTGTTTTCTGTTCTGAGG  798

seq1  CCTTCTGTTACGTATTGGCTGATGTTTTATATTAATGATCAATTTTGAGT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTACGTATTGGCTGATGTTTTATATTAATGATCAATTTTGAGT  848

seq1  GTGTTTCTAGCTCTTACGAGTTTTGTGTTGATGTGGCACCAAGTGCTTGT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTAGCTCTTACGAGTTTTGTGTTGATGTGGCACCAAGTGCTTGT  898

seq1  CTCCCTTTTGAGTGACTCTGGATAGTGATCCCTCCAGTGTTGGTTGCTAA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTGAGTGACTCTGGATAGTGATCCCTCCAGTGTTGGTTGCTAA  948

seq1  TGGAGAAGATGTCCAAATCCAGAAGAGATAACCAAATACAACAGTTGCAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGATGTCCAAATCCAGAAGAGATAACCAAATACAACAGTTGCAA  998

seq1  GTTGAAACACAGAAACACACACACACACATACACACACCATAAAAGAGCA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAACACAGAAACACACACACACACATACACACACCATAAAAGAGCA  1048

seq1  AGATAAACATGAGACTTCCGAGAGATCATAACTTCCATCAATGAGCTCAG  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACATGAGACTTCCGAGAGATCATAACTTCCATCAATGAGCTCAG  1098

seq1  TGACACTGAAATGGTTGACGAGCTGGGGATAGAATTC  1110
      |||||||||||||||||||||||||||||||||||||
seq2  TGACACTGAAATGGTTGACGAGCTGGGGATAGAATTC  1135