BAC Information

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BAC

Clone NameB6Ng01-311L22
Chromosome1 (Build37)
Map Location 82,050,960 - 82,219,343
singlet/doubletdoublet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L22.bB6Ng01-311L22.g
ACCGA103388GA103389
length1,1721,174
definitionB6Ng01-311L22.b B6Ng01-311L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,218,172 - 82,219,343)(82,050,960 - 82,052,137)
sequence
gaattcaatagccttgagtcatcccggagactcctaagaagttgaaagcg
taaaaaaactacttaagttctgcgagccatagttttcccgtctggattcg
aggatgctgctgctcacagtgcaggttgatgctcactaggctttctcagt
acttcctccctagctcaccccgtgtacgtctagccttggaacttaattct
aaacatggtgataaagatcaggcataggctcttcttattccatgacaaag
agtgaagttaaagtccatatagggtggacaattccctgcttgaggtcctc
ttcctccttcctcctgactctatctactggtcaaataaagttgtgtgcta
gacacaagtttagaatttagccatagatggaatctcaccgtggctgtgtt
gattcccagaatgcttcagtgagatttcctaatctgctgcccctcccaat
ccctgcctctgaagaatgtgagtagttacagcgccagttctgcctctcac
tggtttttgttttttgttttaaccatgtggtcatttttttttaattttta
ttttttagatattttatttacatttcaaatgttatcccctttcctaactt
cccctttgaaaatcccctattccctcccccctccccctgctccccaaccc
acctacaccttattctaactgttgcattacttcctcaagcacagcggtaa
taggaactctcactgcatccatggacacatacatggaccctatgtctagc
atgttcacacttctggatcacccagacgctgtttgttttgttcagagagg
caaggatttgcttgaagatgttggtctaggagcggatgtcctcggaattc
attttagctgctgtggctcttaaggtttgagttccattcttttccaatta
gaatttaaaatgtaaaagcatatgtttaagaatgggcagtttctcttctc
atttatgatcatctaactttccatcacaatccgggttttgttgtttggtt
tccttttccttcttgtttaaagagcagagggtgtcagtgggaacctttgc
aaacagaactccatttatccctgcttaagatcatggaaatgcctgtgcag
aacccacaagaaattggagggcccttggaaaaagctgtgcatggagacaa
gctcttagcctgtgcccttgag
gaattcaaactcaaatcaagaaaatacagatatgccatttttcccacatg
acctcaatttgtttgcaaattaacaattatgtttaaatctgcagagccac
atatgcttaaaaccaacaacttccccttctagcaccaatcccttcctcaa
cacagattcattcacatacaggtaggcatctctaatttaaaacattgaag
cctgttgaacaacaatattatatataagtaggaaattctatttctgactt
catctgacatgtcatggacaaaattcagacttatttaaaagaaacactgc
ataaaattatcttcaaacatggacaaaaagtatttatgaaatccaatgag
ttttacttttacactcggaattcaaccgtattatatgtcattgcctattt
acaaacattccaaaatcaaaacaaggtaaattcaagatgccttgggttct
aaacatttttagattacaccttgacatctgaattcttactctctctggat
agtttatcagttactaagctggtgctatgatcttgatatgtttggtctct
attattagttaaaatagtaggtagataataacaaagctatgttctagatt
aagggaagccaattcgtactttattagctcacagtgaggttaattaaagc
acgttgagaatttgagatagaatcatatccttagctaggttctttagtaa
taaagaccagagagcagtaattgtggtccctgggctttcaaaacatgatt
agttttatcttttctcttgaataaaggctatgcttcaggaatcttagaaa
acatttaatcaataagatgccacggaacacaaaactctcatcatttaata
aagaaaccaagactcagaacaactctatatgtctggataaacatatgcaa
gtggatattattgatcttccaagcagagaatttcatttcattgaacgtca
aaaatttaaaatgagtatctgtctactaggaaaggcagaaaatactttaa
caatgatgtcaagtactgcatctcagaaaccactgctgtctttagaatca
tggtgtcagtccagtaacactggagccctatcctcaggaaacagctggtc
ctcatgcagtcctctctctctaatgtctcataaggcaagcttccagaaag
aaaggttactgagagacacagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82218172_82219343
seq2: B6Ng01-311L22.b_47_1218 (reverse)

seq1  CTCAA-GGCACAGGCTAAGAACTGCTC----AGCACAGCCTTTCTCCAGG  45
      ||||| |||||||||||||| ||  ||     ||||||| |||  | |||
seq2  CTCAAGGGCACAGGCTAAGAGCTTGTCTCCATGCACAGCTTTTTCCAAGG  50

seq1  G-CCTCCAATTTCTTGTGGG-TCTGCACA-GCA-TTCCATGGATC-TAAG  90
      | |||||||||||||||||| |||||||| ||| |||||| |||| ||||
seq2  GCCCTCCAATTTCTTGTGGGTTCTGCACAGGCATTTCCAT-GATCTTAAG  99

seq1  CA-GGAT-AATGGAGTCTGGTTTGGCAAGGTTCCCACTGGACACCCTCTG  138
      || |||| ||||||||   |||||  |||||||||||| |||||||||||
seq2  CAGGGATAAATGGAGTTCTGTTTGCAAAGGTTCCCACT-GACACCCTCTG  148

seq1  CTCTTTAAAAACAAAAGAAAGGAAAAAGAAAACAAAACAAACAAAAAACC  188
      ||||||||    | |||||  | ||||| |||| |||||   | ||||||
seq2  CTCTTTAA----ACAAGAA--GGAAAAGGAAACCAAACA---ACAAAACC  189

seq1  AGGATTGTTGATGG-AAGTTAGATGATCATAAATGAAGAAGAGAAACTGC  237
       |||||| |||||| |||||||||||||||||||| ||||||||||||||
seq2  CGGATTG-TGATGGAAAGTTAGATGATCATAAATG-AGAAGAGAAACTGC  237

seq1  CCATTCTTAAACATATTGCTTTTACATTTTAAATTCTAATTGGAAAAAGA  287
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  CCATTCTTAAACATA-TGCTTTTACATTTTAAATTCTAATTGG-AAAAGA  285

seq1  ATGGAACTCAAACCTTAAGAGCCACAGCAGCCTAAATG-ATTCCGAGGAC  336
      |||||||||||||||||||||||||||||||  ||||| |||||||||||
seq2  ATGGAACTCAAACCTTAAGAGCCACAGCAGCTAAAATGAATTCCGAGGAC  335

seq1  ATCCGCTCCTAGACCAACATCTTCAAGCAAATCCTTGCCTCTCTGAACAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTCCTAGACCAACATCTTCAAGCAAATCCTTGCCTCTCTGAACAA  385

seq1  AAC-AACAGCGTCTGGGTGATCCAGAAGTGTGAACATGCTAGACATAGGG  435
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAGCGTCTGGGTGATCCAGAAGTGTGAACATGCTAGACATAGGG  435

seq1  TCCATGTATGTGTCCATGGATGCAGTGAGAGTTCCTATTACCGCTGTGCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATGTGTCCATGGATGCAGTGAGAGTTCCTATTACCGCTGTGCT  485

seq1  TGAGGAAGTAATGCAACAGTTAGAATAAGGTGTAGGTGGGTTGGGGAGCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGTAATGCAACAGTTAGAATAAGGTGTAGGTGGGTTGGGGAGCA  535

seq1  GGGGGAGGGGGGAGGGAATAGGGGATTTTCAAAGGGGAAGTTAGGAAAGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGGGAGGGAATAGGGGATTTTCAAAGGGGAAGTTAGGAAAGG  585

seq1  GGATAACATTTGAAATGTAAATAAAATATCTAAAAAATAAAAATTAAAAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATTTGAAATGTAAATAAAATATCTAAAAAATAAAAATTAAAAA  635

seq1  AAAATGACCACATGGTTAAAACAAAAAACAAAAACCAGTGAGAGGCAGAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACCACATGGTTAAAACAAAAAACAAAAACCAGTGAGAGGCAGAA  685

seq1  CTGGCGCTGTAACTACTCACATTCTTCAGAGGCAGGGATTGGGAGGGGCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCTGTAACTACTCACATTCTTCAGAGGCAGGGATTGGGAGGGGCA  735

seq1  GCAGATTAGGAAATCTCACTGAAGCATTCTGGGAATCAACACAGCCACGG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAGGAAATCTCACTGAAGCATTCTGGGAATCAACACAGCCACGG  785

seq1  TGAGATTCCATCTATGGCTAAATTCTAAACTTGTGTCTAGCACACAACTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCCATCTATGGCTAAATTCTAAACTTGTGTCTAGCACACAACTT  835

seq1  TATTTGACCAGTAGATAGAGTCAGGAGGAAGGAGGAAGAGGACCTCAAGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACCAGTAGATAGAGTCAGGAGGAAGGAGGAAGAGGACCTCAAGC  885

seq1  AGGGAATTGTCCACCCTATATGGACTTTAACTTCACTCTTTGTCATGGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGTCCACCCTATATGGACTTTAACTTCACTCTTTGTCATGGAA  935

seq1  TAAGAAGAGCCTATGCCTGATCTTTATCACCATGTTTAGAATTAAGTTCC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAGCCTATGCCTGATCTTTATCACCATGTTTAGAATTAAGTTCC  985

seq1  AAGGCTAGACGTACACGGGGTGAGCTAGGGAGGAAGTACTGAGAAAGCCT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGACGTACACGGGGTGAGCTAGGGAGGAAGTACTGAGAAAGCCT  1035

seq1  AGTGAGCATCAACCTGCACTGTGAGCAGCAGCATCCTCGAATCCAGACGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCATCAACCTGCACTGTGAGCAGCAGCATCCTCGAATCCAGACGG  1085

seq1  GAAAACTATGGCTCGCAGAACTTAAGTAGTTTTTTTACGCTTTCAACTTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATGGCTCGCAGAACTTAAGTAGTTTTTTTACGCTTTCAACTTC  1135

seq1  TTAGGAGTCTCCGGGATGACTCAAGGCTATTGAATTC  1172
      |||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTCTCCGGGATGACTCAAGGCTATTGAATTC  1172

seq1: chr1_82050960_82052137
seq2: B6Ng01-311L22.g_70_1243

seq1  GAATTCAAACTCAAATCAAGAAAATACAGATATGCCATTTTTCCCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCAAATCAAGAAAATACAGATATGCCATTTTTCCCACATG  50

seq1  ACCTCAATTTGTTTGCAAATTAACAATTATGTTTAAATCTGCAGAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATTTGTTTGCAAATTAACAATTATGTTTAAATCTGCAGAGCCAC  100

seq1  ATATGCTTAAAACCAACAACTTCCCCTTCTAGCACCAATCCCTTCCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTAAAACCAACAACTTCCCCTTCTAGCACCAATCCCTTCCTCAA  150

seq1  CACAGATTCATTCACATACAGGTAGGCATCTCTAATTTAAAACATTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCATTCACATACAGGTAGGCATCTCTAATTTAAAACATTGAAG  200

seq1  CCTGTTGAACAACAATATTATATATAAGTAGGAAATTCTATTTCTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAACAACAATATTATATATAAGTAGGAAATTCTATTTCTGACTT  250

seq1  CATCTGACATGTCATGGACAAAATTCAGACTTATTTAAAAGAAACACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACATGTCATGGACAAAATTCAGACTTATTTAAAAGAAACACTGC  300

seq1  ATAAAATTATCTTCAAACATGGACAAAAAGTATTTATGAAATCCAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATCTTCAAACATGGACAAAAAGTATTTATGAAATCCAATGAG  350

seq1  TTTTACTTTTACACTCGGAATTCAACCGTATTATATGTCATTGCCTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTACACTCGGAATTCAACCGTATTATATGTCATTGCCTATTT  400

seq1  ACAAACATTCCAAAATCAAAACAAGGTAAATTCAAGATGCCTTGGGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTCCAAAATCAAAACAAGGTAAATTCAAGATGCCTTGGGTTCT  450

seq1  AAACATTTTTAGATTACACCTTGACATCTGAATTCTTACTCTCTCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTAGATTACACCTTGACATCTGAATTCTTACTCTCTCTGGAT  500

seq1  AGTTTATCAGTTACTAAGCTGGTGCTATGATCTTGATATGTTTGGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCAGTTACTAAGCTGGTGCTATGATCTTGATATGTTTGGTCTCT  550

seq1  ATTATTAGTTAAAATAGTAGGTAGATAATAACAAAGCTATGTTCTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGTTAAAATAGTAGGTAGATAATAACAAAGCTATGTTCTAGATT  600

seq1  AAGGGAAGCCAATTCGTACTTTATTAGCTCACAGTGAGGTTAATTAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGCCAATTCGTACTTTATTAGCTCACAGTGAGGTTAATTAAAGC  650

seq1  ACGTTGAGAATTTGAGATAGAATCATATCCTTAGCTAGGTTCTTTAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGAGAATTTGAGATAGAATCATATCCTTAGCTAGGTTCTTTAGTAA  700

seq1  TAAAGACCAGAGAGCAGTAATTGTGGTCCCTGGGCTTTCAAAACATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCAGAGAGCAGTAATTGTGGTCCCTGGGCTTTCAAAACATGATT  750

seq1  AGTTTTATCTTTTCTCTTGAAT-AAGGCTATGCTTCAGGAATCTTAGAAA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTTTATCTTTTCTCTTGAATAAAGGCTATGCTTCAGGAATCTTAGAAA  800

seq1  ACATTTAATCAATAAGATGCCACGGAACACAAAACTCTCATCATTTAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATCAATAAGATGCCACGGAACACAAAACTCTCATCATTTAATA  850

seq1  AAGAAACCAAGACTCAGAACAACTCTATATGTCTGGATAAACATATGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCAAGACTCAGAACAACTCTATATGTCTGGATAAACATATGCAA  900

seq1  GTGGATA-TATTGATCTTCCAAGCAGAGAATTTCATTTCATTGAACGTCA  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGATATTATTGATCTTCCAAGCAGAGAATTTCATTTCATTGAACGTC-  949

seq1  AAAAATTTAAAATGAGTATCTGTCTACTAGGAAAGGCAG-AAATACTTTT  997
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  AAAAATTTAAAATGAGTATCTGTCTACTAGGAAAGGCAGAAAATAC-TTT  998

seq1  AACAAATGAATGTCAGGTACTTGCATCTCAGAAA-CACTGCTGTCTTTAG  1046
      ||| |||| |||||| |||| ||||||||||||| |||||||||||||||
seq2  AAC-AATG-ATGTCAAGTAC-TGCATCTCAGAAACCACTGCTGTCTTTAG  1045

seq1  AAATCAT-GTGTCAGTCAAGT-ACACT-GAGCCCTAATCCCTCAAGAAAC  1093
       |||||| ||||||||| ||| ||||| ||||||||   ||||| |||||
seq2  -AATCATGGTGTCAGTCCAGTAACACTGGAGCCCTA--TCCTCAGGAAAC  1092

seq1  AGCTGTCCCTCATTGCCAGTCCTCTCTCT-AAATGTCTCATAAAGGCAAA  1142
      |||||  ||||||   |||||||||||||  |||||||||| ||||||| 
seq2  AGCTGGTCCTCAT--GCAGTCCTCTCTCTCTAATGTCTCAT-AAGGCAAG  1139

seq1  CCTCCCACAGAAAGAAAAG-TACAGAGAGACA-AGAAC  1178
      | ||   |||||||||| | ||| |||||||| |||||
seq2  CTTC---CAGAAAGAAAGGTTACTGAGAGACACAGAAC  1174