BAC Information

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BAC

Clone NameB6Ng01-311N05
Chromosome1 (Build37)
Map Location 46,830,046 - 46,956,818
singlet/doubletdoublet
Overlap geneSlc39a10
Upstream geneWdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneEG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311N05.bB6Ng01-311N05.g
ACCGA103447GA103448
length8781,058
definitionB6Ng01-311N05.b B6Ng01-311N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,955,961 - 46,956,818)(46,830,046 - 46,831,047)
sequence
gtcctgggccagaggtaggctatgcctcaccctccacaaggcacaccagg
atctagtcatagacttcagtggggagctgtgctctgtcttccaggccagg
gcattttttatttgtacttagaatttaactggtgaaaaatgattgaagtg
aaattggttttactcctcaattttatcagtttctaataattcatatctct
tttgcattttgttttttgggtttttgttttttttttaaatatatatttat
ttctttgtaactgctggatgcatagctgaacaggcagtttgagaatgcta
gccaacgccaggaagaaacacaggcaactcctcttccaaccaaaatactg
ttaatgctcactgaattgtgctacctgagagagagagaaagagagagaga
gagagagagagagagagagagagagagagaatgaattgtactatatactc
attcactaaggtgaatgttattgtagttgcagaagtcatatcattttaac
atagcaaattttattgtaagttaaaggtttgttttgttttattgtttatt
agtttgtttgctcatttggttcatggtcattttgttttgtttgtttggtg
ctagaaatagaactcaagcccccaagcccagggttttgagaatgccaggc
aaactctttcattatcaaactgtatcctcagctccctaactttagtcatt
tctatctttaaacattaaaatgctgaggacccctgatgacatagaacaaa
tcaggataaacaaatttgactaactctgggaggttcaggatctagtttga
aattggttcataacaagaatcatcaatataacaagggtctttttcagttt
tagcgtaagaacaaataccaaatatagg

gaattctatgttgttagcagctctcactttctaatgtaagatattccaga
ctcatcatggaatcttcatgattctgtcacagaactctgctttttctgag
tggttaatggtattggagaactaaatggatattagatgacttcctcggta
cataaatatagacacagccaggaatagtggtgcacaccttgaatcccagc
actgtgtaaagggattacagcatgcagatctttgtgagtttgaggtcaac
ctggtttgtgtattgagttctaggacagacagagctaaatggagagaacc
tatgaaaagcaaaaaaacaacaaaagttaaagaaagaaaatctataggca
tgcaaacatgcaaatatacgtgcatatcctacaggcactctagacatgaa
gactacatgccagaattttcagtttcacagcatcttccacattcattctt
gtctgtcttcacttcatgtttgtcttttcttttacattaagacatctgga
ttccaacaattaattattgacttaatcaatgattcaatatatgcaaaata
attcagagtaatactggcatgtttagtcaatgtctttagtcatttatctc
tcttttagtctgtacctctcttttatcagatctgttttattctttctcat
ttcttttttggttgattttatatctccctgttttctattttccttttcaa
ttttattctgtgaagggaccttatgctgtgaaataaaatttagtcctttc
tgtgatgtttctgggttttgttaaataataaagtatcctatagttacttc
cagttgcaagaagagattgagtcagaaattgggaggtatgacacaatatg
ttaattactacgtcgctgttattacaatgcaggctttggattctcacact
ctcaccagtgtccctggctggtgggtggcagcctatcaagggaagagaat
ggagctgcaatctccttctcatgacctgtgaacacaagctcgcagctgtg
gtaccaattcactccagagtggatttgaaacagatgggcagattttctga
tcttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_46955961_46956818
seq2: B6Ng01-311N05.b_54_930 (reverse)

seq1  CTATA-TTGGTATTTG-TCTTACGCT-AAACTG-AAAAGA-CCTTGTTAT  45
      ||||| |||||||||| ||||||||| |||||| |||||| |||||||||
seq2  CTATATTTGGTATTTGTTCTTACGCTAAAACTGAAAAAGACCCTTGTTAT  50

seq1  ATCG-TGA-TCTTGTTATGAA-CAATTTC-AACTAGATCCTGAACCTCCC  91
      || | ||| |||||||||||| ||||||| ||||||||||||||||||||
seq2  ATTGATGATTCTTGTTATGAACCAATTTCAAACTAGATCCTGAACCTCCC  100

seq1  AGAGTTAGTC-AATTTGTTTATCCTGATTTGTTCTATGTCATCA-GGGTC  139
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGAGTTAGTCAAATTTGTTTATCCTGATTTGTTCTATGTCATCAGGGGTC  150

seq1  CTCAGCATTT--ATGTTTAAAGATAG-AATGACT-AAGTTA-GGAGCTGA  184
      ||||||||||  |||||||||||||| ||||||| |||||| ||||||||
seq2  CTCAGCATTTTAATGTTTAAAGATAGAAATGACTAAAGTTAGGGAGCTGA  200

seq1  GGATACAGTTTGATAATG-AAGAG-TTGCCTGGCATTCTCAAAACCCTGG  232
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GGATACAGTTTGATAATGAAAGAGTTTGCCTGGCATTCTCAAAACCCTGG  250

seq1  GCTT-GGGGCTTGAGTTCTATTTCTAGCACCAAACAAACAAAACAAAATG  281
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGCTTGAGTTCTATTTCTAGCACCAAACAAACAAAACAAAATG  300

seq1  ACCATGAACCAAATGAGCAAACAAACTAATAAACAATAAAACAAAACAAA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAACCAAATGAGCAAACAAACTAATAAACAATAAAACAAAACAAA  350

seq1  CCTTTAACTTACAATAAAATTTGCTATGTTAAAATGATATGACTTCTGCA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTTACAATAAAATTTGCTATGTTAAAATGATATGACTTCTGCA  400

seq1  ACTACAATAACATTCACCTTAGTGAATGAGTATATAGTACAATTCATTCT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATAACATTCACCTTAGTGAATGAGTATATAGTACAATTCATTCT  450

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCT  500

seq1  CAGGTAGCACAATTCAGTGAGCATTAACAGTATTTTGGTTGGAAGAGGAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCACAATTCAGTGAGCATTAACAGTATTTTGGTTGGAAGAGGAG  550

seq1  TTGCCTGTGTTTCTTCCTGGCGTTGGCTAGCATTCTCAAACTGCCTGTTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTGTTTCTTCCTGGCGTTGGCTAGCATTCTCAAACTGCCTGTTC  600

seq1  AGCTATGCATCCAGCAGTTACAAAGAAATAAATATATATTTAAAAAAAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCATCCAGCAGTTACAAAGAAATAAATATATATTTAAAAAAAAA  650

seq1  ACAAAAACCCAAAAAACAAAATGCAAAAGAGATATGAATTATTAGAAACT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCCAAAAAACAAAATGCAAAAGAGATATGAATTATTAGAAACT  700

seq1  GATAAAATTGAGGAGTAAAACCAATTTCACTTCAATCATTTTTCACCAGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATTGAGGAGTAAAACCAATTTCACTTCAATCATTTTTCACCAGT  750

seq1  TAAATTCTAAGTACAAATAAAAAATGCCCTGGCCTGGAAGACAGAGCACA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAAGTACAAATAAAAAATGCCCTGGCCTGGAAGACAGAGCACA  800

seq1  GCTCCCCACTGAAGTCTATGACTAGATCCTGGTGTGCCTTGTGGAGGGTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACTGAAGTCTATGACTAGATCCTGGTGTGCCTTGTGGAGGGTG  850

seq1  AGGCATAGCCTACCTCTGGCCCAGGAC  858
      |||||||||||||||||||||||||||
seq2  AGGCATAGCCTACCTCTGGCCCAGGAC  877


seq1: chr1_46830046_46831047
seq2: B6Ng01-311N05.g_128_1126

seq1  GAATCTTCATGATTCTGTCACAGAACTCTGCTTTTTCTGAGTGGTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCATGATTCTGTCACAGAACTCTGCTTTTTCTGAGTGGTTAATG  50

seq1  GTATTGGAGAACTAAATGGATATTAGATGACTTCCTCGGTACATAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGAGAACTAAATGGATATTAGATGACTTCCTCGGTACATAAATAT  100

seq1  AGACACAGCCAGGAATAGTGGTGCACACCTTGAATCCCAGCACTGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGCCAGGAATAGTGGTGCACACCTTGAATCCCAGCACTGTGTAA  150

seq1  AGGGATTACAGCATGCAGATCTTTGTGAGTTTGAGGTCAACCTGGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTACAGCATGCAGATCTTTGTGAGTTTGAGGTCAACCTGGTTTGT  200

seq1  GTATTGAGTTCTAGGACAGACAGAGCTAAATGGAGAGAACCTATGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGTTCTAGGACAGACAGAGCTAAATGGAGAGAACCTATGAAAAG  250

seq1  CAAAAAAACAACAAAAGTTAAAGAAAGAAAATCTATAGGCATGCAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAACAAAAGTTAAAGAAAGAAAATCTATAGGCATGCAAACAT  300

seq1  GCAAATATACGTGCATATCCTACAGGCACTCTAGACATGAAGACTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATACGTGCATATCCTACAGGCACTCTAGACATGAAGACTACATG  350

seq1  CCAGAATTTTCAGTTTCACAGCATCTTCCACATTCATTCTTGTCTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTTTCAGTTTCACAGCATCTTCCACATTCATTCTTGTCTGTCTT  400

seq1  CACTTCATGTTTGTCTTTTCTTTTACATTAAGACATCTGGATTCCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATGTTTGTCTTTTCTTTTACATTAAGACATCTGGATTCCAACAA  450

seq1  TTAATTATTGACTTAATCAATGATTCAATATATGCAAAATAATTCAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTGACTTAATCAATGATTCAATATATGCAAAATAATTCAGAGT  500

seq1  AATACTGGCATGTTTAGTCAATGTCTTTAGTCATTTATCTCTCTTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGCATGTTTAGTCAATGTCTTTAGTCATTTATCTCTCTTTTAGT  550

seq1  CTGTACCTCTCTTTTATCAGATCTGTTTTATTCTTTCTCATTTCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTCTCTTTTATCAGATCTGTTTTATTCTTTCTCATTTCTTTTTT  600

seq1  GGTTGATTTTATATCTCCCTGTTTTCTATTTTCCTTTTCAATTTTATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATTTTATATCTCCCTGTTTTCTATTTTCCTTTTCAATTTTATTCT  650

seq1  GTGAAGGGACCTTATGCTGTGAAATAAAATTTAGTCCTTTCTGTGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGACCTTATGCTGTGAAATAAAATTTAGTCCTTTCTGTGATGTT  700

seq1  TCTGGGTTTTGTTAAATAATAAAGTATCCTATAGTTACTTCCAGTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTTGTTAAATAATAAAGTATCCTATAGTTACTTCCAGTTGCAA  750

seq1  GAAGAGATTGAGTCAGAAATTGGGAGGTATGACACAATATGTTAATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATTGAGTCAGAAATTGGGAGGTATGACACAATATGTTAATTACT  800

seq1  ACGTCGCTGTTATTACAAATGCAGGCTTTGGATTCTCCACACTCTCACCA  850
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  ACGTCGCTGTTATTAC-AATGCAGGCTTTGGATTCT-CACACTCTCACCA  848

seq1  GTGTCCCTGGCTGGTGGGTGGCAGCCTATCAGGGGAAGAGAAT-GAGCTG  899
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GTGTCCCTGGCTGGTGGGTGGCAGCCTATCAAGGGAAGAGAATGGAGCTG  898

seq1  CCATCCTCCTTCTCATGACCTGTG-ACAC-AGCTCGCAGCTGTTGGTACC  947
      | || ||||||||||||||||||| |||| |||||||||||| |||||||
seq2  CAAT-CTCCTTCTCATGACCTGTGAACACAAGCTCGCAGCTG-TGGTACC  946

seq1  -ATTCACTTCAGAGTGGTTTTGAAACAGGAAGGGGCAGATATTTCTGATC  996
       ||||||| |||||||| ||||||||||  | |||||||| |||||||||
seq2  AATTCACTCCAGAGTGGATTTGAAACAG--ATGGGCAGAT-TTTCTGATC  993

seq1  TTAGCT  1002
      ||||||
seq2  TTAGCT  999


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