BAC Information

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BAC

Clone NameB6Ng01-312C09
Chromosome1 (Build37)
Map Location 142,688,037 - 142,853,830
singlet/doubletdoublet
Overlap genenone
Upstream geneBC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312C09.bB6Ng01-312C09.g
ACCGA103688GA103689
length9941,065
definitionB6Ng01-312C09.b B6Ng01-312C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,853,286 - 142,853,830)(142,688,037 - 142,689,103)
sequence
gaattcagggagggagaaaagaagttcaaagaaaactttatgactatggc
attactatcttggtaagaacagatttgagtttttatagtgaacatgataa
taataataataataataataataataataataagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaataagaatgaaaatgaaagt
acatgcccatcttggcttgggatgagaaattcaactctgatcaatgtaag
ttggatatgcttttgattgaattgtatggcatatatctgacttgaatatg
atctttgaacatgagatataagtaaaagaaatattagcatctgttatttt
tgaaataatatatttactaattttttatttttcaaatatatattaataca
ttttgatcatatccattcaccactacttttctctagctacccataatgtt
ctcataccacatgactccaaaattaatgtcctctttttatattgttatta
ataatatccagtgtctcattatttctgtgcatatggacatagttgtgagg
ccatacactagattatggacaatctgttatgtgtaacctacctgttacca
tgtctaaaaagaagtgactctcccttccttagcatccatcaactaacaat
agcacctcagccgttttgagggcttgtgagccctaatcctatccattctg
gaactttaattcccttgatgttatgctactagccacagctgctgtgagta
gaagtggaaagcctttatgtcattttgggaactaagagttttacagctct
acttcccatccatgggtacctatgctctttcttccttcccttccttcctc
tccttaagcctaggatgcagggtagaatttgataaagatggtttgttcac
tcatgagcactgacagaaacttgtacatggaactttgactatttacaaat
cttaaccgcataaacaaaacacctctagtatatggctgtagtag

gaattcagactcatggttgacccaggatgttgaaaataggtgaaaattga
aggctcagacgtaatctagacagtatactgactgcctcacacagaattca
gggaaaaacaaaaaaacaaaaaaacctgaaagtgtgaaaagattttaaaa
gatggagataggtagaagtgctgagacatgctatcatcggagtataaaac
agcttgttaatagccaattaatggtcatggaggggcttctgggttttaca
tttctaatctgaactattgatggcttctgtgagaggcacagtctgttact
ttgtactcattggtgagcccatcaccaaagaacacatacaaattcatgtt
ctcatagacagacaagggtgaaaagagataagaaagaagaagcatgaggg
caatcaaaatgtattctctacatgtataaaactgccaaagaacaaagtta
gtaataataaaaaatatcatgcatgccattttcatgtatgtgtaataaac
aaacaacaaaccaaaaaatgaagggaatagaactcatgaaaataattatt
ggcccaaatcattttcatccatgaaacatcttaatagttccttcttagta
aattaattaaacaatgtaagtataaagttttgaaattcattggccttgtt
gaaattttgttcaacaattaccctatagtgcatgccattgtaacaatttt
tacatgcatgcatagtcatataaataagccagtgcaaaattttgtcactc
tatgagttaatgcaaaccaagtttacttcatgtgaatttgaattgagatg
ttaagctgcagttcaagttctgctttcccacttgtaacagcacaattacc
ccggggacataaccagtatttcctggaaggaaagcaagatggaaggcagt
agtgaatgtcgcttgaaaacagactcttcacaggcagcttcagtgattca
agtcttttagtggggggatgaaacgatatttaaaccatcagaatggtgga
gggggggctttcagctattgcatgtaataagccagggcacgtgctgagat
gcctcatagtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142853286_142853830
seq2: B6Ng01-312C09.b_45_589 (reverse)

seq1  CAACTATGTCCATATGCACAGAAATAATGAGACACTGGATATTATTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATGTCCATATGCACAGAAATAATGAGACACTGGATATTATTAATA  50

seq1  ACAATATAAAAAGAGGACATTAATTTTGGAGTCATGTGGTATGAGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAAAAGAGGACATTAATTTTGGAGTCATGTGGTATGAGAACAT  100

seq1  TATGGGTAGCTAGAGAAAAGTAGTGGTGAATGGATATGATCAAAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTAGCTAGAGAAAAGTAGTGGTGAATGGATATGATCAAAATGTAT  150

seq1  TAATATATATTTGAAAAATAAAAAATTAGTAAATATATTATTTCAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATATTTGAAAAATAAAAAATTAGTAAATATATTATTTCAAAAAT  200

seq1  AACAGATGCTAATATTTCTTTTACTTATATCTCATGTTCAAAGATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGCTAATATTTCTTTTACTTATATCTCATGTTCAAAGATCATAT  250

seq1  TCAAGTCAGATATATGCCATACAATTCAATCAAAAGCATATCCAACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAGATATATGCCATACAATTCAATCAAAAGCATATCCAACTTAC  300

seq1  ATTGATCAGAGTTGAATTTCTCATCCCAAGCCAAGATGGGCATGTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAGAGTTGAATTTCTCATCCCAAGCCAAGATGGGCATGTACTTT  350

seq1  CATTTTCATTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400

seq1  TTCTTCTTCTTCTTATTATTATTATTATTATTATTATTATTATTATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTATTATTATTATTATTATTATTATTATTATTATTATC  450

seq1  ATGTTCACTATAAAAACTCAAATCTGTTCTTACCAAGATAGTAATGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACTATAAAAACTCAAATCTGTTCTTACCAAGATAGTAATGCCAT  500

seq1  AGTCATAAAGTTTTCTTTGAACTTCTTTTCTCCCTCCCTGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAAAGTTTTCTTTGAACTTCTTTTCTCCCTCCCTGAATTC  545


seq1: chr1_142688037_142689103
seq2: B6Ng01-312C09.g_66_1130

seq1  GAATTCAGACTCATGGTTGACCCAGGATGTTGAAAATAGGTGAAAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCATGGTTGACCCAGGATGTTGAAAATAGGTGAAAATTGA  50

seq1  AGGCTCAGACGTAATCTAGACAGTATACTGACTGCCTCACACAGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGACGTAATCTAGACAGTATACTGACTGCCTCACACAGAATTCA  100

seq1  GGGAAAAACAAAAAAACAAAAAAACCTGAAAGTGTGAAAAGATTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAACAAAAAAACAAAAAAACCTGAAAGTGTGAAAAGATTTTAAAA  150

seq1  GATGGAGATAGGTAGAAGTGCTGAGACATGCTATCATCGGAGTATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATAGGTAGAAGTGCTGAGACATGCTATCATCGGAGTATAAAAC  200

seq1  AGCTTGTTAATAGCCAATTAATGGTCATGGAGGGGCTTCTGGGTTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTAATAGCCAATTAATGGTCATGGAGGGGCTTCTGGGTTTTACA  250

seq1  TTTCTAATCTGAACTATTGATGGCTTCTGTGAGAGGCACAGTCTGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATCTGAACTATTGATGGCTTCTGTGAGAGGCACAGTCTGTTACT  300

seq1  TTGTACTCATTGGTGAGCCCATCACCAAAGAACACATACAAATTCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCATTGGTGAGCCCATCACCAAAGAACACATACAAATTCATGTT  350

seq1  CTCATAGACAGACAAGGGTGAAAAGAGATAAGAAAGAAGAAGCATGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGACAGACAAGGGTGAAAAGAGATAAGAAAGAAGAAGCATGAGGG  400

seq1  CAATCAAAATGTATTCTCTACATGTATAAAACTGCCAAAGAACAAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAATGTATTCTCTACATGTATAAAACTGCCAAAGAACAAAGTTA  450

seq1  GTAATAATAAAAAATATCATGCATGCCATTTTCATGTATGTGTAATAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATAAAAAATATCATGCATGCCATTTTCATGTATGTGTAATAAAC  500

seq1  AAACAACAAACCAAAAAATGAAGGGAATAGAACTCATGAAAATAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAAACCAAAAAATGAAGGGAATAGAACTCATGAAAATAATTATT  550

seq1  GGCCCAAATCATTTTCATCCATGAAACATCTTAATAGTTCCTTCTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAATCATTTTCATCCATGAAACATCTTAATAGTTCCTTCTTAGTA  600

seq1  AATTAATTAAACAATGTAAGTATAAAGTTTTGAAATTCATTGGCCTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAAACAATGTAAGTATAAAGTTTTGAAATTCATTGGCCTTGTT  650

seq1  GAAATTTTGTTCAACAATTACCCTATAGTGCATGCCATTGTAACAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGTTCAACAATTACCCTATAGTGCATGCCATTGTAACAATTTT  700

seq1  TACATGCATGCATAGTCATATAAATAAGCCAGTGCAAAATTTTGTCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATGCATAGTCATATAAATAAGCCAGTGCAAAATTTTGTCACTC  750

seq1  TATGAGTTAATGCAAACCAAGTTTACTTCATGTGAATTTGAATTGAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTAATGCAAACCAAGTTTACTTCATGTGAATTTGAATTGAGATG  800

seq1  TTAAGCTGCAGTTCAAGTTCTGCTTTCCCACTTGTAACAGCACAATTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGCAGTTCAAGTTCTGCTTTCCCACTTGTAACAGCACAATTACC  850

seq1  CCGGGGACATAACCAGTATTTCCTGGAAGGAAAGCAAGATGGAAGGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGACATAACCAGTATTTCCTGGAAGGAAAGCAAGATGGAAGGCAGT  900

seq1  AGTGAATGTCGCTTGAAAACAGACTCTTCACAGGCAGCTTCAGTGATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGTCGCTTGAAAACAGACTCTTCACAGGCAGCTTCAGTGATTCA  950

seq1  AGTCTTTTAGT-GGGGGATGAAACGATATTTAAACCATCAGAAT-GTGGA  998
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGTCTTTTAGTGGGGGGATGAAACGATATTTAAACCATCAGAATGGTGGA  1000

seq1  -GGGGGGCTTTCAGGCTATTGCATGTAATAAGCCAGGGCCACGGTGCTGA  1047
       |||||||||||| |||||||||||||||||||||||| ||| |||||||
seq2  GGGGGGGCTTTCA-GCTATTGCATGTAATAAGCCAGGG-CAC-GTGCTGA  1047

seq1  GAATGCCTCATTAGTGTATG  1067
      | |||||||| |||||||||
seq2  G-ATGCCTCA-TAGTGTATG  1065


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