BAC Information

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BAC

Clone NameB6Ng01-312F21
Chromosome1 (Build37)
Map Location 157,502,334 - 157,660,349
singlet/doubletdoublet
Overlap geneAcbd6, Lhx4, Qscn6
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367
Downstream geneCep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312F21.bB6Ng01-312F21.g
ACCGA103854GA103855
length9051,158
definitionB6Ng01-312F21.b B6Ng01-312F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,659,449 - 157,660,349)(157,502,334 - 157,503,506)
sequence
ccaatgtgaaaactgcgagaaggagccccctggaactttccaggaacaag
ataaatctgtaacgactatgccaacggactccgcttccgtaggatacggg
ggccgagagcggccaaacgttgccccggccccctcaacgacctcgagtgc
ggcctgaggtcccgggcggcactcgtttccggacccagctcggaggtctg
gctcgccgggggatgggaaccgcggagcgcccaccagcaccgggaccccg
gctctggcagctcacacgctcgcaggggcggtcccgggagtcggccccgc
ctcggggcggagcctcttagctcctcctcctcctccggggcggaggctgt
tggtgcgcggcaggctccggatactgactagtcacaaacttgaaggaggt
ggacattcaagccgcctaggatgaggaggtgcggccgcctctcggggccg
ccatcgctgctgctactactgctgctgctctcgcctctgctcttctcggg
gcccggcgcttacgcggcccggctctcagtgctctactcgtcctctgacc
cgctgacgctgctggatgctgattcggtgcgtcccactgtgctcggctcc
agcagcgcctgggcggtggagttcttcgcctcctggtgtggccactgcat
cgccttcgccccgacgtggaaggagctttgctaacgacgtgaaaggtgag
aagtggaggcctttccccgacccaccggcaggtcctgccaaccgtcccgc
tagctcgtcccctccctcgcggcttccttgttccatcgcagtccctcccc
tccccaatccatagcctttaagttcacccctggcgcgtcccctcagtcct
cttgtctctgcgtcttctctgacaagtctttgtctcttatcccttcgaag
agggt
gaattctcaaacgctccctggtgacttggggatagggaaagctgtcttgg
cccatttatcctgctccttaaataaccaggtatctgcctcatccctagga
aagcatttggcagtaatggcacaggggtgctatagaaatccattaacctt
aactcacaaagatgtgggtgaaaggaagggacgtttcaaatacccgcaaa
gcactgaggtagggtttcccattttattcatatattttcctactccactg
ccctatatcattttctttgctaggatgctattattattaattatcattta
ctcttttgtgtcattgaattttgttagccactaccagctcttgtgtattt
ttcttaccctggatgtatgcttgtaagtcagcaggttacaaataaatttt
aatatagattatgggaacactaattaaataaatttttaatttaaaaatat
ctttctctgaggaatgctaattaaataaaattttaattgtaaaatatctt
agtctgagcatacataattttgacatcttttgcagcctagcaaaatttga
tttctaattactggtgtaatagtccattaagtgcatttggaaattattat
tgaactgattagacagaggctgagagttgcaggtatagtctataaaatac
tgtcccaaagtttttctgctaaccagtaaggtgacatgagctaccatggg
gtaaattatccaaactggcaaaggaaaatcccacacaaagaagttacata
ccttcccagtctccatgatgttaagcttaagcaatatttccattgtttcc
taactggattacattagcatattccagaagagttctaaatatgtcaaatt
tatccattcactctgtgaatggatagctactgtcctttgtgtatccaggc
ttctgagttccaagtcaccacagtgaaggaccaaagtctatgctcttggt
atagcagttcctagtgagcgaagcataacaagcagtctcagtggtgctag
agatgagagagggttaccgtgagcgatgctcagtgagactaagtttacta
aggtgacagttaaactacgtaaatgaagaaaagccctgcatcatctcaga
aacaggaacaatcgcatgctaggacagggatgtgctgttctcaggaccgg
ccagtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_157659449_157660349
seq2: B6Ng01-312F21.b_55_959 (reverse)

seq1  ACCCTC-TCGAA-GGAT-AGAGACAAAGACTTGTCAGAGGAAGACGCAG-  46
      |||||| ||||| |||| |||||||||||||||||||| |||||||||| 
seq2  ACCCTCTTCGAAGGGATAAGAGACAAAGACTTGTCAGA-GAAGACGCAGA  49

seq1  GAGCAGAGGACTGAGGGGACGCGGCCAGGGAGAACTTAAAGGCTATGGAT  96
      ||  ||||||||||||||||||| |  ||| |||||||||||||||||||
seq2  GACAAGAGGACTGAGGGGACGCGCCAGGGGTGAACTTAAAGGCTATGGAT  99

seq1  TGGGGGAGGGGAGGGACTGCGATGGACCAAGGAAGCCGCGAGGGAGGGGA  146
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  T-GGGGAGGGGAGGGACTGCGATGGAACAAGGAAGCCGCGAGGGAGGGGA  148

seq1  CGAGCTAGCGGGACGGTTGGCAGGACCTGCCGGTGGGTCGGGG-AAGGCC  195
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGAGCTAGCGGGACGGTTGGCAGGACCTGCCGGTGGGTCGGGGAAAGGCC  198

seq1  TCCACTTCTCACCTTTCACGTCGTTAGC-AAGCTCCTTCCACGTCGGGGC  244
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCACTTCTCACCTTTCACGTCGTTAGCAAAGCTCCTTCCACGTCGGGGC  248

seq1  GAAGGCGATGCAGTGGCCACACCAGGAGGCGAAGAACTCCACCGCCCAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGATGCAGTGGCCACACCAGGAGGCGAAGAACTCCACCGCCCAGG  298

seq1  CGCTGCTGGAGCCGAGCACAGTGGGACGCACCGAATCAGCATCCAGCAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGGAGCCGAGCACAGTGGGACGCACCGAATCAGCATCCAGCAGC  348

seq1  GTCAGCGGGTCAGAGGACGAGTAGAGCACTGAGAGCCGGGCCGCGTAAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGGGTCAGAGGACGAGTAGAGCACTGAGAGCCGGGCCGCGTAAGC  398

seq1  GCCGGGCCCCGAGAAGAGCAGAGGCGAGAGCAGCAGCAGTAGTAGCAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCCCCGAGAAGAGCAGAGGCGAGAGCAGCAGCAGTAGTAGCAGCA  448

seq1  GCGATGGCGGCCCCGAGAGGCGGCCGCACCTCCTCATCCTAGGCGGCTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGCGGCCCCGAGAGGCGGCCGCACCTCCTCATCCTAGGCGGCTTG  498

seq1  AATGTCCACCTCCTTCAAGTTTGTGACTAGTCAGTATCCGGAGCCTGCCG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACCTCCTTCAAGTTTGTGACTAGTCAGTATCCGGAGCCTGCCG  548

seq1  CGCACCAACAGCCTCCGCCCCGGAGGAGGAGGAGGAGCTAAGAGGCTCCG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCAACAGCCTCCGCCCCGGAGGAGGAGGAGGAGCTAAGAGGCTCCG  598

seq1  CCCCGAGGCGGGGCCGACTCCCGGGACCGCCCCTGCGAGCGTGTGAGCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGGCGGGGCCGACTCCCGGGACCGCCCCTGCGAGCGTGTGAGCTG  648

seq1  CCAGAGCCGGGGTCCCGGTGCTGGTGGGCGCTCCGCGGTTCCCATCCCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCGGGGTCCCGGTGCTGGTGGGCGCTCCGCGGTTCCCATCCCCC  698

seq1  GGCGAGCCAGACCTCCGAGCTGGGTCCGGAAACGAGTGCCGCCCGGGACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCCAGACCTCCGAGCTGGGTCCGGAAACGAGTGCCGCCCGGGACC  748

seq1  TCAGGCCGCACTCGAGGTCGTTGAGGGGGCCGGGGCAACGTTTGGCCGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCGCACTCGAGGTCGTTGAGGGGGCCGGGGCAACGTTTGGCCGCT  798

seq1  CTCGGCCCCCGTATCCTACGGAAGCGGAGTCCGTTGGCATAGTCGTTACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCCCCGTATCCTACGGAAGCGGAGTCCGTTGGCATAGTCGTTACA  848

seq1  GATTTATCTTGTTCCTGGAAAGTTCCAGGGGGCTCCTTCTCGCAGTTTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCTTGTTCCTGGAAAGTTCCAGGGGGCTCCTTCTCGCAGTTTTC  898

seq1  ACATTGG  901
      |||||||
seq2  ACATTGG  905

seq1: chr1_157502334_157503506
seq2: B6Ng01-312F21.g_67_1224

seq1  GAATTCTCAAACGCTCCCTGGTGACTTGGGGATAGGGAAAGCTGTCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACGCTCCCTGGTGACTTGGGGATAGGGAAAGCTGTCTTGG  50

seq1  CCCATTTATCCTGCTCCTTAAATAACCAGGTATCTGCCTCATCCCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTATCCTGCTCCTTAAATAACCAGGTATCTGCCTCATCCCTAGGA  100

seq1  AAGCATTTGGCAGTAATGGCACAGGGGTGCTATAGAAATCCATTAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGGCAGTAATGGCACAGGGGTGCTATAGAAATCCATTAACCTT  150

seq1  AACTCACAAAGATGTGGGTGAAAGGAAGGGACGTTTCAAATACCCGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAAAGATGTGGGTGAAAGGAAGGGACGTTTCAAATACCCGCAAA  200

seq1  GCACTGAGGTAGGGTTTCCCATTTTATTCATATATTTTCCTACTCCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGGTAGGGTTTCCCATTTTATTCATATATTTTCCTACTCCACTG  250

seq1  CCCTATATCATTTTCTTTGCTAGGATGCTATTATTATTAATTATCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATCATTTTCTTTGCTAGGATGCTATTATTATTAATTATCATTTA  300

seq1  CTCTTTTGTGTCATTGAATTTTGTTAGCCACTACCAGCTCTTGTGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTGTCATTGAATTTTGTTAGCCACTACCAGCTCTTGTGTATTT  350

seq1  TTCTTACCCTGGATGTATGCTTGTAAGTCAGCAGGTTACAAATAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCCTGGATGTATGCTTGTAAGTCAGCAGGTTACAAATAAATTTT  400

seq1  AATATAGATTATGGGAACACTAATTAAATAAATTTTTAATTTAAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATTATGGGAACACTAATTAAATAAATTTTTAATTTAAAAATAT  450

seq1  CTTTCTCTGAGGAATGCTAATTAAATAAAATTTTAATTGTAAAATATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGAGGAATGCTAATTAAATAAAATTTTAATTGTAAAATATCTT  500

seq1  AGTCTGAGCATACATAATTTTGACATCTTTTGCAGCCTAGCAAAATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGCATACATAATTTTGACATCTTTTGCAGCCTAGCAAAATTTGA  550

seq1  TTTCTAATTACTGGTGTAATAGTCCATTAAGTGCATTTGGAAATTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTACTGGTGTAATAGTCCATTAAGTGCATTTGGAAATTATTAT  600

seq1  TGAACTGATTAGACAGAGGCTGAGAGTTGCAGGTATAGTCTATAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATTAGACAGAGGCTGAGAGTTGCAGGTATAGTCTATAAAATAC  650

seq1  TGTCCCAAAGTTTTTCTGCTAACCAGTAAGGTGACATGAGCTACCATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAAGTTTTTCTGCTAACCAGTAAGGTGACATGAGCTACCATGGG  700

seq1  GTAAATTATCCAAACTGGCAAAGGAAAATCCCACACAAAGAAGTTACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTATCCAAACTGGCAAAGGAAAATCCCACACAAAGAAGTTACATA  750

seq1  CCTTCCCAGTCTCCATGATGTTAAGCTTAAGCAATATTTCCATTGTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGTCTCCATGATGTTAAGCTTAAGCAATATTTCCATTGTTTCC  800

seq1  TAACTGGATTACATTAGCATATTCCAGAAGAGTTCTAAATATGTCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATTACATTAGCATATTCCAGAAGAGTTCTAAATATGTCAAATT  850

seq1  TATCCATTCACTCTGTGAATGGATAGCTACTGTCCTTTGTGTATCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCACTCTGTGAATGGATAGCTACTGTCCTTTGTGTATCCAGGC  900

seq1  TTCTGAGTTCCAAGTCACCACAGTGAAGGACCAAAGTCTATGCTCTTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCCAAGTCACCACAGTGAAGGACCAAAGTCTATGCTCTTGGT  950

seq1  ATAGCAGTTCCTAGTGAGCGAAGCATAACAAGGCAGTCTCAGTGGTGCTA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  ATAGCAGTTCCTAGTGAGCGAAGCATAACAA-GCAGTCTCAGTGGTGCT-  998

seq1  AGAGATGAAGAGGAGGGTTACCGTGAGCGATGCTCAAGTGAGACTAAGGT  1050
      ||||||| ||| ||||||||||||||||||||||| ||||||||||| ||
seq2  AGAGATG-AGA-GAGGGTTACCGTGAGCGATGCTC-AGTGAGACTAA-GT  1044

seq1  TTACTAAGGTGACAGTTAAACCTAAGGTTAAATGAAGAAAAGCCCTGCCA  1100
      |||||||||||||||||||| ||| |  ||||||||||||||||||||  
seq2  TTACTAAGGTGACAGTTAAA-CTACG--TAAATGAAGAAAAGCCCTGC--  1089

seq1  ATCATCTCCAGAACAGGAGCATCGGCATGCTGAGGACCAGGGTGATGTGC  1150
      ||||||||   ||||||| ||   ||||||| |||| ||||  |||||| 
seq2  ATCATCTCAGAAACAGGAACAATCGCATGCT-AGGA-CAGG--GATGTG-  1134

seq1  CTGTCTCCAGGACCGG-CAGTTTC  1173
      ||||   ||||||||| |||||||
seq2  CTGTTCTCAGGACCGGCCAGTTTC  1158