BAC Information

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BAC

Clone NameB6Ng01-312P07
Chromosome1 (Build37)
Map Location 136,725,601 - 136,906,410
singlet/doubletdoublet
Overlap genePpp1r12b, Ube2t, Lgr6
Upstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
Downstream genePtprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312P07.bB6Ng01-312P07.g
ACCGA104295GA104296
length1,173937
definitionB6Ng01-312P07.b B6Ng01-312P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,725,601 - 136,726,313)(136,905,478 - 136,906,410)
sequence
gaattcattggttttaatagctgagtagtactccattgtgtaaatgtacc
acattttctgtatccattcctctgttgagggacatctgggttctttccag
cttctggctattatacataaggctactatgaacatagtagagcatatgtc
cttattacaagttgtagcatcttctgggtatatgcccaggagtaatattg
ctgaatcttccagtagaactatgtccaattttctgaggaatcaccaaact
gatttccagacttgcaatctgattaccagcttgcaatcccaccagcaatg
gaggagtgttcctctatctaaccatccagtgaaaagaagacagcattttc
aacaaatgttggtggctcaaccggcagttagcatgtagaagaattcaaac
tgatccattcttatctccttgtataaagctcaagtctaagtggatcaagg
aacgccacataaaaccagagacactgaaacttatagaggagaaagtgaga
aagagcctcgaagatatgggcacaggggaaaaactcctgaatagaacagc
aatggcttgtgctgtaagatcaagaattgacaaatgggacttcataaaat
tgcaaagcttctgtaaggcaaaggacactgtcaatgagacaaaacagcaa
cgaacagattgggaaaagatctttaccaatcctaaatcagatagggggct
aataaccaacatatataaagaactcaagaagttggactccagaaaaccaa
ataaccctattaaaaatggggtacagagctaagcaaagaatttttaactg
aggaatactaaatggctgagaagcacctaaaaaaatgttcaacatcctta
atcatcagggaaatgcaaatcaaaacaaccctgagattctacctcacagc
agtcagaatggctaagatcaaaaactcaggtatcagcagatgctggctgt
ggaggccttagttttcttaactatgagagtaggttcttgacccaagttac
ctctgaattatcttgtactcatgataacaaaaagttaccagggaaatgtc
tttactgtactgaataagcttctcaacaagtcccgtagaaccaagcagtc
ttgtcttgggtctgctgcctttctttttaaggccatgaccttggcttggc
tcactaaagtcttttctgactga
gaattctcatgaatttattgattttttattattattaatgagcttgctta
gagttcttcagttgctcattcagcacatacttgctgagatcctgctctgt
gtcagatattattctggtgtttaagattcaaaacagacagaattctcatg
ttcaagaagctttcgttctggttgggtaggaagaaaagaaatgacatgtg
ccaataagttctacgaaggcaaagaaagcaggaagtctcttgtgtcataa
aaatcactccaaaacgtagtgacctaaagtaccaccttattatttctcgt
ggcttggctgggctccctgggatcgtggaggaggctgtagtcactggagg
cttagagagggctaaagggtctaccacagctcctcttacttatcggaagc
cccaccactggctgtcagcgcatcctcttggtatagctcaccacttgtga
gtcccatttgggccgccttacaagctgctgtgaggattcctaggttgtga
aggcagaagctgcaagactttatcacttagggctaggccacactatattc
cttctgtcttgtattggtcactgccatcgacaaggccaggcaagtcttca
gagtgacacatctttattccttatgaaaaaatataattccccgtgggcaa
gaatcgagaattctgaaaggagctgaaccaactttaaaggggacacttga
ttttcaaacattgagacatgaagatgaaccagttatgtaccgccatgtta
ggctaggagaaactcagaagaggaagaggtgaactgtaatgtaacatgga
ggtagagtgggtaagaggttgtgttgttttgaaatacgctggtcagagaa
ggctttctctgaagagggatatcttaggaaggggactaagtagtcataca
attgttctggggggtaggatattttaggtagagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136725601_136726313
seq2: B6Ng01-312P07.b_508_1223

seq1  CATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGAGAAAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGAGAAAGAGCC  50

seq1  TCGAAGATATGGGCACAGGGGAAAAACTCCTGAATAGAACAGCAATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGATATGGGCACAGGGGAAAAACTCCTGAATAGAACAGCAATGGCT  100

seq1  TGTGCTGTAAGATCAAGAATTGACAAATGGGACTTCATAAAATTGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAAGATCAAGAATTGACAAATGGGACTTCATAAAATTGCAAAG  150

seq1  CTTCTGTAAGGCAAAGGACACTGTCAATGAGACAAAACAGCAACGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAAGGCAAAGGACACTGTCAATGAGACAAAACAGCAACGAACAG  200

seq1  ATTGGGAAAAGATCTTTACCAATCCTAAATCAGATAGGGGGCTAATAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAAGATCTTTACCAATCCTAAATCAGATAGGGGGCTAATAACC  250

seq1  AACATATATAAAGAACTCAAGAAGTTGGACTCCAGAAAACCAAATAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATAAAGAACTCAAGAAGTTGGACTCCAGAAAACCAAATAACCC  300

seq1  TATTAAAAATGGGGTACAGAGCTAAGCAAAGAATTTTTAACTGAGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAATGGGGTACAGAGCTAAGCAAAGAATTTTTAACTGAGGAATA  350

seq1  CTAAATGGCTGAGAAGCACCTAAAAAAATGTTCAACATCCTTAATCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGCTGAGAAGCACCTAAAAAAATGTTCAACATCCTTAATCATCA  400

seq1  GGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACAGCAGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACAGCAGTCAGA  450

seq1  ATGGCTAAGATCAAAAACTCAGGTATCAGCAGATGCTGGCTGTGGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGATCAAAAACTCAGGTATCAGCAGATGCTGGCTGTGGAGGCC  500

seq1  TTAGTTTTCTTAACTATGAGAGTAGGTTCTTGAACCAAGTTACCTCTGAA  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGTTTTCTTAACTATGAGAGTAGGTTCTTGACCCAAGTTACCTCTGAA  550

seq1  TTATCTTGTAACTCATGAT-ACAAAAAGTTACAAGGGAAATGTCTTTACT  599
      ||||||||| ||||||||| |||||||||||| |||||||||||||||||
seq2  TTATCTTGT-ACTCATGATAACAAAAAGTTACCAGGGAAATGTCTTTACT  599

seq1  GTACTGAATAAGCTTCTTCAACAAGTCCCGTAGAACAAAAGCAATC-TGT  648
      |||||||||||||||| |||||||||||||||||||  ||||| || |||
seq2  GTACTGAATAAGCTTC-TCAACAAGTCCCGTAGAAC-CAAGCAGTCTTGT  647

seq1  CTTTGG--TTCTGCCTGCTTCTTTTT-AGGGCATGA-CTCTGCTT-GCTC  693
      ||| ||  | ||||||  |||||||| ||| ||||| ||  |||| ||||
seq2  CTTGGGTCTGCTGCCT--TTCTTTTTAAGGCCATGACCTTGGCTTGGCTC  695

seq1  ACTAAAGTCTTTTCTG-CTGA  713
      |||||||||||||||| ||||
seq2  ACTAAAGTCTTTTCTGACTGA  716

seq1: chr1_136905478_136906410
seq2: B6Ng01-312P07.g_67_1003 (reverse)

seq1  TTCCCTCTACCTAAAATATCCTA-CCCCCAG-ACAATTGTATGGCTACTT  48
      | ||||||||||||||||||||| ||||||| ||||||||||| ||||||
seq2  TCCCCTCTACCTAAAATATCCTACCCCCCAGAACAATTGTATGACTACTT  50

seq1  AGTCCCCTTCCTAAGATATCCCTCTTCAGAG-AAGCCTTCTCTGACCAGC  97
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTCCCCTTCCTAAGATATCCCTCTTCAGAGAAAGCCTTCTCTGACCAGC  100

seq1  GTATTTC-AAACAACACAACCTCTTACCCACTCTACCTCCATGTTACATT  146
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAAAACAACACAACCTCTTACCCACTCTACCTCCATGTTACATT  150

seq1  ACAGTTCACCTCTTCCTCTTCTGAGTTTCTCCTAGCCTAACATGGCGGTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCACCTCTTCCTCTTCTGAGTTTCTCCTAGCCTAACATGGCGGTA  200

seq1  CATAACTGGTTCATCTTCATGTCTCAATGTTTGAAAATCAAGTGTCCCCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGTTCATCTTCATGTCTCAATGTTTGAAAATCAAGTGTCCCCT  250

seq1  TTAAAGTTGGTTCAGCTCCTTTCAGAATTCTCGATTCTTGCCCACGGGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGGTTCAGCTCCTTTCAGAATTCTCGATTCTTGCCCACGGGGA  300

seq1  ATTATATTTTTTCATAAGGAATAAAGATGTGTCACTCTGAAGACTTGCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTTTTCATAAGGAATAAAGATGTGTCACTCTGAAGACTTGCCT  350

seq1  GGCCTTGTCGATGGCAGTGACCAATACAAGACAGAAGGAATATAGTGTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTCGATGGCAGTGACCAATACAAGACAGAAGGAATATAGTGTGG  400

seq1  CCTAGCCCTAAGTGATAAAGTCTTGCAGCTTCTGCCTTCACAACCTAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCTAAGTGATAAAGTCTTGCAGCTTCTGCCTTCACAACCTAGGA  450

seq1  ATCCTCACAGCAGCTTGTAAGGCGGCCCAAATGGGACTCACAAGTGGTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACAGCAGCTTGTAAGGCGGCCCAAATGGGACTCACAAGTGGTGA  500

seq1  GCTATACCAAGAGGATGCGCTGACAGCCAGTGGTGGGGCTTCCGATAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACCAAGAGGATGCGCTGACAGCCAGTGGTGGGGCTTCCGATAAGT  550

seq1  AAGAGGAGCTGTGGTAGACCCTTTAGCCCTCTCTAAGCCTCCAGTGACTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCTGTGGTAGACCCTTTAGCCCTCTCTAAGCCTCCAGTGACTA  600

seq1  CAGCCTCCTCCACGATCCCAGGGAGCCCAGCCAAGCCACGAGAAATAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTCCACGATCCCAGGGAGCCCAGCCAAGCCACGAGAAATAATA  650

seq1  AGGTGGTACTTTAGGTCACTACGTTTTGGAGTGATTTTTATGACACAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTACTTTAGGTCACTACGTTTTGGAGTGATTTTTATGACACAAGA  700

seq1  GACTTCCTGCTTTCTTTGCCTTCGTAGAACTTATTGGCACATGTCATTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGCTTTCTTTGCCTTCGTAGAACTTATTGGCACATGTCATTTC  750

seq1  TTTTCTTCCTACCCAACCAGAACGAAAGCTTCTTGAACATGAGAATTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTACCCAACCAGAACGAAAGCTTCTTGAACATGAGAATTCTG  800

seq1  TCTGTTTTGAATCTTAAACACCAGAATAATATCTGACACAGAGCAGGATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAATCTTAAACACCAGAATAATATCTGACACAGAGCAGGATC  850

seq1  TCAGCAAGTATGTGCTGAATGAGCAACTGAAGAACTCTAAGCAAGCTCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGTATGTGCTGAATGAGCAACTGAAGAACTCTAAGCAAGCTCAT  900

seq1  TAATAATAATAAAAAATCAATAAATTCATGAGAATTC  933
      |||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAAAAAATCAATAAATTCATGAGAATTC  937