BAC Information

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BAC

Clone NameB6Ng01-313E12
Chromosome1 (Build37)
Map Location 170,086,003 - 170,219,100
singlet/doubletdoublet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313E12.bB6Ng01-313E12.g
ACCGA104540GA104541
length1,185770
definitionB6Ng01-313E12.b B6Ng01-313E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,086,003 - 170,087,194)(170,218,332 - 170,219,100)
sequence
gaattctcgggcacagattttttgggatctagaaagttgacctgacctga
aatcatagggagccaagtttttagaggcacactctttccacttctatctg
gaggctgccagttttccctagccttgcttgaccacagagatctggtggct
gccacattggaggtgacagtgggcatggagaacagactgctggctacatg
ttgaaccttcaggaggcctaatgaagtgctgggtaggtgggcctctcagc
acagccactgcctagagagaagcattctgtgagggtggcactgctgtggc
ctgatccactcatgtcccttcatgtgttccatccagagctggggtcactc
ttgtttccaagagaacccttcagcaaatcttataatgtgctttatggaaa
atgatgtggtccaaccattgttctgagagtggtttcaatgtattcctgcc
acaaagacaaaaatcaccggttctcatcactaccacacacacacacacac
acacacacacacacacacacacacacttgtattgtcccttctaggcacgc
gttctgagcatggcagaggttagatgacagtctttctagtgactggggtc
agctggacaaatttacatttgccaaacaattctgttctgcattatcttca
aatactcagtcccccaggttccaggtatacaggcccaactcctccaaaca
cacatgaagcatgtctcctatttatcactgcatgtggaatgtgtttggca
ctgtgggcttgtctctcagccctcaagctcttgtacttcttcctgggagt
ccctgaagcagaagagttgtcatagggacaaggacttgcaaggtctcata
actggattcaagttgaaactaataaaaccaggttctactcctctagtttt
gaatctcttctctatcctaagaagacaaacagaccaaaaccaaatcagag
cagaaagcctctgaaacactctcatgatggtgatggcatcaaggtactga
gacaagtagaattagaacaagaaaaccatgtattattctgacctagcatg
acatgtcattataggagactgccttccctgaccatcagacctggagatta
aaatacaaggcaagatcagttctgggctctacaagaaccttgtgagccat
ggataacattccaatttacagagggaaggtgcatg

gaattcttcagagacattcaggtttagcccatgaaggccctggtatttaa
aaacagggaggtgggagtgggccttatggacacctggtgtgaggggggtc
agaggaggtgagccaggttgaagtgggccaccaaattgggaggctgagga
acagagaactgtatgggttcccttgtgacgatttttttttccttcttcta
tagagtaaaatcagaaaagccccatctgccttttagggaaaggtcattct
tggtgactggtgacatctggggtagggcccagttcattatgccacccaga
atatcagtagcttgggcgttgggacctagggaaagaagaagggattaaaa
aaaagagagagaagaggagacccctgctgccaatcgggcagctctgcctg
tctgcgggctgctgcgacccactcgttacaattaaaatgaagtgtccgtc
agcggctatcttctctgtgtggtccatatgtttctgagctgatactgtcc
ggattattctgttcgggaaaacgataacggctgtttataaccttggcaaa
gactaaggcctaatcaggctggagcacattttcaccgactggctgataac
aggctgttagcggccttatcgctggggagagataggccaaaataagcaga
gctgtgaacacaggagcccaatcgagtggtacacactctggccccggctt
tatttttagattcccttttcccggttgatagcagaaggcacagaggaagg
aggtggggtggggtggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170086003_170087194
seq2: B6Ng01-313E12.b_42_1226

seq1  GAATTCTCGGGCACAGATTTTTTGGGATCTAGAAAGTTGACCTGACCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGCACAGATTTTTTGGGATCTAGAAAGTTGACCTGACCTGA  50

seq1  AATCATAGGGAGCCAAGTTTTTAGAGGCACACTCTTTCCACTTCTATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGGGAGCCAAGTTTTTAGAGGCACACTCTTTCCACTTCTATCTG  100

seq1  GAGGCTGCCAGTTTTCCCTAGCCTTGCTTGACCACAGAGATCTGGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCCAGTTTTCCCTAGCCTTGCTTGACCACAGAGATCTGGTGGCT  150

seq1  GCCACATTGGAGGTGACAGTGGGCATGGAGAACAGACTGCTGGCTACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTGGAGGTGACAGTGGGCATGGAGAACAGACTGCTGGCTACATG  200

seq1  TTGAACCTTCAGGAGGCCTAATGAAGTGCTGGGTAGGTGGGCCTCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTTCAGGAGGCCTAATGAAGTGCTGGGTAGGTGGGCCTCTCAGC  250

seq1  ACAGCCACTGCCTAGAGAGAAGCATTCTGTGAGGGTGGCACTGCTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACTGCCTAGAGAGAAGCATTCTGTGAGGGTGGCACTGCTGTGGC  300

seq1  CTGATCCACTCATGTCCCTTCATGTGTTCCATCCAGAGCTGGGGTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCACTCATGTCCCTTCATGTGTTCCATCCAGAGCTGGGGTCACTC  350

seq1  TTGTTTCCAAGAGAACCCTTCAGCAAATCTTATAATGTGCTTTATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCAAGAGAACCCTTCAGCAAATCTTATAATGTGCTTTATGGAAA  400

seq1  ATGATGTGGTCCAACCATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGGTCCAACCATTGTTCTGAGAGTGGTTTCAATGTATTCCTGCC  450

seq1  ACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAAAAATCACCGGTTCTCATCACTACCACACACACACACACAC  500

seq1  ACACACACACACACACACACACACACTTGTATTGTCCCTTCTAGGCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACTTGTATTGTCCCTTCTAGGCACGC  550

seq1  GTTCTGAGCATGGCAGAGGTTAGATGACAGTCTTTCTAGTGACTGGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGCATGGCAGAGGTTAGATGACAGTCTTTCTAGTGACTGGGGTC  600

seq1  AGCTGGACAAATTTACATTTGCCAAACAATTCTGTTCTGCATTATCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACAAATTTACATTTGCCAAACAATTCTGTTCTGCATTATCTTCA  650

seq1  AATACTCAGTCCCCCAGGTTCCAGGTATACAGGCCCAACTCCTCCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAGTCCCCCAGGTTCCAGGTATACAGGCCCAACTCCTCCAAACA  700

seq1  CACATGAAGCATGTCTCCTATTTATCACTGCATGTGGAATGTGTTTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGCATGTCTCCTATTTATCACTGCATGTGGAATGTGTTTGGCA  750

seq1  CTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCTTGTCTCTCAGCCCTCAAGCTCTTGTACTTCTTCCTGGGAGT  800

seq1  CCCTGAAGCAGAAGAGTTGTCATAGGGACAAGGACTTGCAAGGTCTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGCAGAAGAGTTGTCATAGGGACAAGGACTTGCAAGGTCTCATA  850

seq1  ACTGGATTCAAGTTGAAACTAATAAAACCAGGTTCTACTCCTCTAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTCAAGTTGAAACTAATAAAACCAGGTTCTACTCCTCTAGTTTT  900

seq1  GAATCTCTTCTCTATCCTAAGAAGACAAACAGACCAAAACCAAATCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTTCTCTATCCTAAGAAGACAAACAGACCAAAACCAAATCAGAG  950

seq1  CAGAAAGCCTCTGAAACACTCTCATGATGGTGATGGCATCAAGGTACTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCTCTGAAACACTCTCATGATGGTGATGGCATCAAGGTACTGA  1000

seq1  GAACAAGTAGAAATTAGAACAAGAAAACCATGTATTATTCTGACCTAGCA  1050
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  G-ACAAGTAG-AATTAGAACAAGAAAACCATGTATTATTCTGACCTAGCA  1048

seq1  TGACATGTTCATTATAGGGAGACTGCCTTCCCTGACCATCAGACCTGGAG  1100
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TGACATG-TCATTATA-GGAGACTGCCTTCCCTGACCATCAGACCTGGAG  1096

seq1  ATT-AAATACAA-GCAAGATCAGTTTCTTGGGCCTCTTACAAGACCCTTG  1148
      ||| |||||||| |||||||||| ||||  || ||| ||||||| |||| 
seq2  ATTAAAATACAAGGCAAGATCAG-TTCT--GGGCTC-TACAAGAACCTT-  1141

seq1  GTGAGCCATGGATAACAATTCCCATTTTACAGAGG--AAGTGCATG  1192
      |||||||||||||||||  | ||| ||||||||||  | |||||||
seq2  GTGAGCCATGGATAACA--TTCCAATTTACAGAGGGAAGGTGCATG  1185


seq1: chr1_170218332_170219100
seq2: B6Ng01-313E12.g_63_832 (reverse)

seq1  ATTACCA-CCCACCCCACCTCCTTCCTCTGTGCCTTCTGCTATCAACCGG  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACCCCACCCCACCTCCTTCCTCTGTGCCTTCTGCTATCAACCGG  50

seq1  GAAAAGGGAATCTAAAAATAAAGCCGGGGCCAGAGTGTGTACCACTCGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAATCTAAAAATAAAGCCGGGGCCAGAGTGTGTACCACTCGAT  100

seq1  TGGGCTCCTGTGTTCACAGCTCTGCTTATTTTGGCCTATCTCTCCCCAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCTGTGTTCACAGCTCTGCTTATTTTGGCCTATCTCTCCCCAGC  150

seq1  GATAAGGCCGCTAACAGCCTGTTATCAGCCAGTCGGTGAAAATGTGCTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGCCGCTAACAGCCTGTTATCAGCCAGTCGGTGAAAATGTGCTCC  200

seq1  AGCCTGATTAGGCCTTAGTCTTTGCCAAGGTTATAAACAGCCGTTATCGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATTAGGCCTTAGTCTTTGCCAAGGTTATAAACAGCCGTTATCGT  250

seq1  TTTCCCGAACAGAATAATCCGGACAGTATCAGCTCAGAAACATATGGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGAACAGAATAATCCGGACAGTATCAGCTCAGAAACATATGGACC  300

seq1  ACACAGAGAAGATAGCCGCTGACGGACACTTCATTTTAATTGTAACGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAGATAGCCGCTGACGGACACTTCATTTTAATTGTAACGAGT  350

seq1  GGGTCGCAGCAGCCCGCAGACAGGCAGAGCTGCCCGATTGGCAGCAGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGCAGCAGCCCGCAGACAGGCAGAGCTGCCCGATTGGCAGCAGGGG  400

seq1  TCTCCTCTTCTCTCTCTTTTTTTTAATCCCTTCTTCTTTCCCTAGGTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCTCTCTCTTTTTTTTAATCCCTTCTTCTTTCCCTAGGTCCC  450

seq1  AACGCCCAAGCTACTGATATTCTGGGTGGCATAATGAACTGGGCCCTACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCCAAGCTACTGATATTCTGGGTGGCATAATGAACTGGGCCCTACC  500

seq1  CCAGATGTCACCAGTCACCAAGAATGACCTTTCCCTAAAAGGCAGATGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTCACCAGTCACCAAGAATGACCTTTCCCTAAAAGGCAGATGGG  550

seq1  GCTTTTCTGATTTTACTCTATAGAAGAAGGAAAAAAAAATCGTCACAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGATTTTACTCTATAGAAGAAGGAAAAAAAAATCGTCACAAGG  600

seq1  GAACCCATACAGTTCTCTGTTCCTCAGCCTCCCAATTTGGTGGCCCACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATACAGTTCTCTGTTCCTCAGCCTCCCAATTTGGTGGCCCACTT  650

seq1  CAACCTGGCTCACCTCCTCTGACCCCCCTCACACCAGGTGTCCATAAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCTCACCTCCTCTGACCCCCCTCACACCAGGTGTCCATAAGGC  700

seq1  CCACTCCCACCTCCCTGTTTTTAAATACCAGGGCCTTCATGGGCTAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCACCTCCCTGTTTTTAAATACCAGGGCCTTCATGGGCTAAACC  750

seq1  TGAATGTCTCTGAAGAATTC  769
      ||||||||||||||||||||
seq2  TGAATGTCTCTGAAGAATTC  770


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