BAC Information

Click to search

BAC

Clone NameB6Ng01-314G01
Chromosome1 (Build37)
Map Location 80,971,874 - 80,972,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G01.bB6Ng01-314G01.g
ACCGA105330GA105331
length1,003943
definitionB6Ng01-314G01.b B6Ng01-314G01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaaattcctaggcaaatggatagttctagaaaatcactcatc
ctgagtgaggtaacttagtcagataagaccatgcatagtatgtgtccact
tgttgataaacggatattagcctaaaaacttggaatacccaagatacaat
tcacagaccacgtgaaggtcaagaagaaggaagactgaagtgtgaatgct
tcagtccttcttagaagggggaacaaaagactcatgggaggaaatatgga
gacaaagtgtggtaccaagactgaaggataggccatccagagactgccct
acctgggtatccatcccatatacaattaccaaatctagacactactgcag
atgccaagaagtgcttaatgactagagcctgatatagctgtctactgaga
ggctctttcagagcctggcaaatacagaggtggatgttcacagttagcca
tttggtccccaatggaggggttagagaaaggactgaaggagctgaagggt
tttgcaatcccataagaagaacaaccatatcaatcaaccagaccctccag
agctcccagaaactaaaccactaaccaagagtacacatggagggacccac
gactccagatgcatatgtagcagagaatggcctcctcagacatcaatggg
aggagaggcccttggtcctgttaatgctccatgccccaatgtagggaaat
gccaggaaagggaggtgggtgagccaggtgggtgagcaccctaatagaag
cagggggatggaaggtgggatgggggtttctggaaaggaaactggggaaa
gaggataacattttgaattgtaaataaataaaatatcccaaagaaaaaag
tgataaatggtgatcgtcttgtatagaataaacaatttttttgagattaa
tttatgtacttattatcaattcattgagtaaatgagacaggtttatctgt
ataggcttggctgacctgggaactcactcggtagagtcaggctgggcctc
gaa

gaattcacccagctggtttcttgtcttgattcaagaatacagttaaagga
ttggaagaatctcaaaagagtctttaaactttggacttttaacattgttg
aaactgctatagactgtggggactttggaagttggacgaaatgtactttt
taattatgctatggctatatatgttcctcatagacttttgtgtttgaaca
agtctatgggagccagagagtggcatttgatggtttgtatatgcttggca
gatagagtggaactattagaacgtgtgaccttcttggaattcatatgtca
ctgtgggtgtgggctttaagaccatcatcctagctgcctgcaagtcagtc
ttccgctagcagccttcagatgaagatgtagaactctcagctcctcctgc
accatgactgcctggatgctgccaagctcccaccttaatgataatgaact
gaacctctgaaactctaagccagccccaattaaatgtccttacaagagtt
gccttggtcatggtgtctcttcaaagcagtaaaaccctaactaagacaga
tatcaattgctttcttataatatatcatgatcttttgtttagaaatatgc
cattaaatggatggaactagaaaatatcatctttttggctaatatccatt
tattagtgagtacattccataagtgtcattttgggtctgacttaccttac
tcaggatgatattttctagttctatacatttgcctgcaaaactctggatg
tcctcattgtttttagtagctgagtagtattctattgtgtaaatgaacca
cattttctgtatccattcttctgttgtgggacatctaggttgtttccacc
ttctggctatcacaaataagaccgctaaagatacagtccaaggtactcaa
aaagttaacaagctgaagtgcccaagtgaggatgcctcctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80971874_80972521
seq2: B6Ng01-314G01.b_394_1047

seq1  GATGCCAAGAAGTGCTTAATGACTAGAGCCTGATATAGCTGTCTACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAAGAAGTGCTTAATGACTAGAGCCTGATATAGCTGTCTACTGAG  50

seq1  AGGCTCTTTCAGAGCCTGGCAAATACAGAGGTGGATGTTCACAGTTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTCAGAGCCTGGCAAATACAGAGGTGGATGTTCACAGTTAGCC  100

seq1  ATTTGGTCCCCAATGGAGGGGTTAGAGAAAGGACTGAAGGAGCTGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCCCCAATGGAGGGGTTAGAGAAAGGACTGAAGGAGCTGAAGGG  150

seq1  TTTTGCAATCCCATAAGAAGAACAACCATATCAATCAACCAGACCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAATCCCATAAGAAGAACAACCATATCAATCAACCAGACCCTCCA  200

seq1  GAGCTCCCAGAAACTAAACCACTAACCAAGAGTACACATGGAGGGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCAGAAACTAAACCACTAACCAAGAGTACACATGGAGGGACCCA  250

seq1  CGACTCCAGATGCATATGTAGCAGAGAATGGCCTCCTCAGACATCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCCAGATGCATATGTAGCAGAGAATGGCCTCCTCAGACATCAATGG  300

seq1  GAGGAGAGGCCCTTGGTCCTGTTAATGCTCCATGCCCCAATGTAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCCCTTGGTCCTGTTAATGCTCCATGCCCCAATGTAGGGAAA  350

seq1  TGCCAGGAAAGGGAGGTGGGTGAGCCAGGTGGGTGAGCACCCTAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAAAGGGAGGTGGGTGAGCCAGGTGGGTGAGCACCCTAATAGAA  400

seq1  GCAGGGGGATGGAAGGTGGGAT-GGGGTTTCTGGAAAGGAAACT-GGGAA  448
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GCAGGGGGATGGAAGGTGGGATGGGGGTTTCTGGAAAGGAAACTGGGGAA  450

seq1  AGAGGATAACA-TTTGAAATGTAAATAAATAAAATATCCCAAAGAAAAAA  497
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AGAGGATAACATTTTGAATTGTAAATAAATAAAATATCCCAAAGAAAAAA  500

seq1  GTGATAAATGG-GATCGTCTTGTATAGAATAAACAA-TTTTTTGGTATTT  545
      ||||||||||| |||||||||||||||||||||||| |||||||  ||| 
seq2  GTGATAAATGGTGATCGTCTTGTATAGAATAAACAATTTTTTTGAGATTA  550

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTATTGAGACAGGGTTTATC  595
      |||||| || ||| ||||  ||| ||| | | | ||||||| ||||||||
seq2  ATTTATGTACTTA-TTATCAATTCATTGAGTAAATGAGACA-GGTTTATC  598

seq1  TGTATAGTCTTGGCTGACCT-GGAACTCACTCTGTAGA-CCAGGCT-GGC  642
      ||||||| |||||||||||| ||||||||||| |||||  |||||| |||
seq2  TGTATAGGCTTGGCTGACCTGGGAACTCACTCGGTAGAGTCAGGCTGGGC  648

seq1  CTCGAA  648
      ||||||
seq2  CTCGAA  654


| Home | SequenceCutter | Blast | Download |