BAC Information

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BAC

Clone NameB6Ng01-314G16
Chromosome1 (Build37)
Map Location 195,083,701 - 195,083,807
singlet/doubletsinglet
Overlap geneHsd11b1
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3
Downstream geneG0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G16.bB6Ng01-314G16.g
ACCGA105360GA105361
length1,158339
definitionB6Ng01-314G16.b B6Ng01-314G16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggattatcaaatggctgagaagcacttgaaaaaatg
ttcaacatcctaaacatcagggaaatgcaaatcaaagcaaccctgagatt
ccagctcataccggtcagaatggctaagatcaaaaattcatgtgacagca
gatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaggattgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatagtactacaggtagatccagcaattcctctcctgtgct
tatacccagaagatgttccaactggtaataaggacacatgctccattatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacaaaatgg
ggtacttacttagctattaaaaagaatgaatttatgaaatttctaggcaa
atggatggatctggagggtatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacctaaggtattatttgcaaagcacatgaaactcaagaagaag
gaagtccaaagtgtggacacttcgccccttctcagaattgggaagaaaac
actcatggaaggagttacggagactaagtttggagctgagacgaaatgtt
ggactatccagagactgccccacccggggatccatttcataatcagccac
caaatgcagacactattgcatacgccagcaagattttgctgcaaggaccc
tgatatcttgtgaggctatgccagtgcctggcaaacacagaagtggatgc
tcacagtcagcttttgggatggaacacaaagggcccccaatggaggagct
aggggaagtacccaaagagctgaatgggtctgcaccctatagtggaacaa
caatatgaattaccagtaccccagagctcgtgtctctagctgcatatgta
gcagagatgggctagtcgtcatcattggagagaggcccctctcttgcaat
ttttatgccagttacaggaatgcaaggtaagaattggacttgggttgtgc
ttagggga
atatttcctaaatgacagggaagcttcatccacgatccctcaacaattta
gccatagctgcctaaataagatgagatatcaccaatagaaatgctaatgt
agaagtctcatggggccacatgcctaaacaaagaaatacaggtaaccaat
gactatagaaagagggagaattagccctgcccagcccagggatgagacct
ttaaactccttctctaataccaagtggccagccctgaaatcatatacatg
caagcaacactaaacagactcagcttgtatttcaagatttatgtatgtat
gtacatatgtgtgtgtgtgtgtgtatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195083701_195083807
seq2: B6Ng01-314G16.g_262_409 (reverse)

seq1  CACACACAGAATGGTACACACATACACACACACACATTTGT--ATACATA  48
      |||||||| |     ||| ||| |||||||||||||| |||  |||||||
seq2  CACACACACA----CACATACACACACACACACACATATGTACATACATA  46

seq1  CACTAAAT----AAAT-----------------------------TTGTA  65
      || |||||    ||||                              ||||
seq2  CA-TAAATCTTGAAATACAAGCTGAGTCTGTTTAGTGTTGCTTGCATGTA  95

seq1  TA----------CCTGTCAACATAGTGAATT--GGAATG-TTTTAAAGGT  102
      ||           ||| | || | ||  |||   ||| |  |||||||||
seq2  TATGATTTCAGGGCTGGCCACTTGGT--ATTAGAGAAGGAGTTTAAAGGT  143

seq1  CTCAT  107
      |||||
seq2  CTCAT  148