BAC Information

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BAC

Clone NameB6Ng01-314P19
Chromosome1 (Build37)
Map Location 58,864,148 - 59,038,118
singlet/doubletdoublet
Overlap geneCasp8, EG667419, Trak2, Als2cr2
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431
Downstream gene4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314P19.bB6Ng01-314P19.g
ACCGA105757GA105758
length1,120959
definitionB6Ng01-314P19.b B6Ng01-314P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,037,015 - 59,038,118)(58,864,148 - 58,864,851)
sequence
gaattcttgtgaataaacatggctctggttaaaggaaggcctgtgtgagt
tttttttcttttgctgtccatcgcaatgctacatgctggccaccaatata
gaagctctgtgtatgtgtgtgtgtgttccaagaacttaaatggttagtag
caggagagaacaccaccaggacttattaaaatattcatactataggcctg
agataaactataagtaaaaataactggaattactttatgctataacaaaa
ttttctaagcaggtttcactgtatagcaaaatttgtagtataaattaaga
attaagaggagtaaagatttcagagacatattaccaagtataacccttta
tattgcttagtatgtcagacaaagatgaataagactagggcgccccttat
atggggatcacattatgctggaagaaacacagaccccactcactgtaaga
cagtatgttgacaagtatcccatgagaatgtcctgacagtgacagcacaa
tgaaatgaaaagacctggggaagagtttacagatacaaaatggaatcaat
tctttacagatgaggagaaatttcaggggagggcagaaacaagggtattt
caagcagagagaagatattcccagtaagaaaggaaactcaaatactggtc
atacacaataccattgagagtctcaatcatgctcagagatttggacttta
ccggttggcttcaaagtggcatgagtgggcatcttggaacagtactgaag
gctgcaagtgtgcacagactacaggccgggtggagcctgagtgcccctgc
tcctcaagggagagggggaggcagcgtagggagaacgccagcggcagtgt
aaggagaacgccagcatcctagcatgtaggagaaatagtcgtgctttcat
tagccaaatggaaaggtacagggggatggaaagatttgggatgaagattt
aagtgtcactcaaatcagtagaaatgctctgggaaaacaattctaattca
gatgtattcttatagataccccaaggactcttggggaagcgtaattctgg
taatcaaccaatgtttctctcagaaccactcgagaaagccttccaaggac
aagcgtgaaggccctcagca
gaattccagaacttttttccttttttccttttttccttttccttttcctc
ccctcctctcctctccctcccctttttccttttctccttttcttttcttt
ttcttctcttttctttcttttctttctcgtcgtactgagtcctgcctctc
tggggtacccaggaacctgggaggggtcagggcaaagtccgaatcaggga
gtccacaatgattcctggtcttctctctggcgtaccatcccagggagtca
ggaactggtctgcggtctttgcttctcctcagggcatctttgtgacaagc
aggagaggggagatggagccccacatgagcagaattcagtctgattagga
gtgaggggctggagaggaggcagccttcttctggagtcttaggcatggct
ccttagtcaaaggccttcttcttgggtgatccttaatggagcagctttct
gagacaatccttgcttgttttttattgctttatttgatggtggatgtaaa
tgcgtacactttattcgggatgaccaaggggttatataccttttgggggc
aggatatccaggaagggaagctcattggctgaaggctcaaggctatctag
acacctcattaacatgaagaagaattccaagtgttatgctatgtgactga
ctgtctggtcttctcagtggggtgtagtggttacatgttgtagagcaggt
acagagacaggtagggaatggctccattcctgccaccaaatctctgagat
tcctggtttgagctcattcagccttaaattcttatgcctgtctggtagtg
cattcccacatgtcctacattctaacgtttttcctcctttcttgtgggtt
cttctatttctctccctacctgggacccctggctgggaatcagaagtcca
gcccttcctgtcctcccccttgcccagttcatagggctgatcatcatttt
ttatttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59037015_59038118
seq2: B6Ng01-314P19.b_47_1166 (reverse)

seq1  TGCTGAGG--CTTCACGC-TGTCC-TGGA--GCTTTCTCGGGT-GTTCTG  43
      ||||||||  |||||||| ||||| ||||  ||||||||| || ||||||
seq2  TGCTGAGGGCCTTCACGCTTGTCCTTGGAAGGCTTTCTCGAGTGGTTCTG  50

seq1  AGAGGAACA-TGGTTGATTACCAGATTTACGCTTCCC--AGGGTCC-TGG  89
      |||| |||| ||||||||||||||| |||||||||||  || |||| |||
seq2  AGAGAAACATTGGTTGATTACCAGAATTACGCTTCCCCAAGAGTCCTTGG  100

seq1  GGTATCTAT-AGAATACATCTG-ATTAG-ATTGTTTTCCCAGAGCATTTC  136
      ||||||||| |||||||||||| ||||| |||||||||||||||||||||
seq2  GGTATCTATAAGAATACATCTGAATTAGAATTGTTTTCCCAGAGCATTTC  150

seq1  TACTGATTTGAGTGACACTTTAATCTTCAT-CCAAATCTTTCCAT-CCCC  184
      |||||||||||||||||||| ||||||||| |||||||||||||| ||||
seq2  TACTGATTTGAGTGACACTTAAATCTTCATCCCAAATCTTTCCATCCCCC  200

seq1  TGTACCTTTCCCTTTGGCTAATGAAAGCACGACTATTTCTCCTACATGCT  234
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTCCATTTGGCTAATGAAAGCACGACTATTTCTCCTACATGCT  250

seq1  AGGATGCTGGCGTTCTCCTTACACTGCCGCTGGCGTTCTCCCTACGCTGC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTGGCGTTCTCCTTACACTGCCGCTGGCGTTCTCCCTACGCTGC  300

seq1  CTCCCCCTCTCCCTTGAGGAGCAGGGGCACTCAGGCTCCACCCGGCCTGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCTCCCTTGAGGAGCAGGGGCACTCAGGCTCCACCCGGCCTGT  350

seq1  AGTCTGTGCACACTTGCAGCCTTCAGTACTGTTCCAAGATGCCCACTCAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGCACACTTGCAGCCTTCAGTACTGTTCCAAGATGCCCACTCAT  400

seq1  GCCACTTTGAAGCCAACCGGTAAAGTCCAAATCTCTGAGCATGATTGAGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGAAGCCAACCGGTAAAGTCCAAATCTCTGAGCATGATTGAGA  450

seq1  CTCTCAATGGTATTGTGTATGACCAGTATTTGAGTTTCCTTTCTTACTGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATGGTATTGTGTATGACCAGTATTTGAGTTTCCTTTCTTACTGG  500

seq1  GAATATCTTCTCTCTGCTTGAAATACCCTTGTTTCTGCCCTCCCCTGAAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTTCTCTCTGCTTGAAATACCCTTGTTTCTGCCCTCCCCTGAAA  550

seq1  TTTCTCCTCATCTGTAAAGAATTGATTCCATTTTGTATCTGTAAACTCTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCATCTGTAAAGAATTGATTCCATTTTGTATCTGTAAACTCTT  600

seq1  CCCCAGGTCTTTTCATTTCATTGTGCTGTCACTGTCAGGACATTCTCATG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTCTTTTCATTTCATTGTGCTGTCACTGTCAGGACATTCTCATG  650

seq1  GGATACTTGTCAACATACTGTCTTACAGTGAGTGGGGTCTGTGTTTCTTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTGTCAACATACTGTCTTACAGTGAGTGGGGTCTGTGTTTCTTC  700

seq1  CAGCATAATGTGATCCCCATATAAGGGGCGCCCTAGTCTTATTCATCTTT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAATGTGATCCCCATATAAGGGGCGCCCTAGTCTTATTCATCTTT  750

seq1  GTCTGACATACTAAGCAATATAAAGGGTTATACTTGGTAATATGTCTCTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACATACTAAGCAATATAAAGGGTTATACTTGGTAATATGTCTCTG  800

seq1  AAATCTTTACTCCTCTTAATTCTTAATTTATACTACAAATTTTGCTATAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTACTCCTCTTAATTCTTAATTTATACTACAAATTTTGCTATAC  850

seq1  AGTGAAACCTGCTTAGAAAATTTTGTTATAGCATAAAGTAATTCCAGTTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACCTGCTTAGAAAATTTTGTTATAGCATAAAGTAATTCCAGTTA  900

seq1  TTTTTACTTATAGTTTATCTCAGGCCTATAGTATGAATATTTTAATAAGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTATAGTTTATCTCAGGCCTATAGTATGAATATTTTAATAAGT  950

seq1  CCTGGTGGTGTTCTCTCCTGCTACTAACCATTTAAGTTCTTGGAACACAC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTGTTCTCTCCTGCTACTAACCATTTAAGTTCTTGGAACACAC  1000

seq1  ACACACATACACAGAGCTTCTATATTGGTGGCCAGCATGTAGCATTGCGA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACAGAGCTTCTATATTGGTGGCCAGCATGTAGCATTGCGA  1050

seq1  TGGACAGCAAAAGAAAAAAAACTCACACAGGCCTTCCTTTAACCAGAGCC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCAAAAGAAAAAAAACTCACACAGGCCTTCCTTTAACCAGAGCC  1100

seq1  ATGTTTATTCACAAGAATTC  1104
      ||||||||||||||||||||
seq2  ATGTTTATTCACAAGAATTC  1120

seq1: chr1_58864148_58864851
seq2: B6Ng01-314P19.g_67_770

seq1  GAATTCCAGAACTTTTTTCCTTTTTTCCTTTTTTCCTTTTCCTTTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTTTTTTCCTTTTTTCCTTTTTTCCTTTTCCTTTTCCTC  50

seq1  CCCTCCTCTCCTCTCCCTCCCCTTTTTCCTTTTCTCCTTTTCTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCCTCTCCCTCCCCTTTTTCCTTTTCTCCTTTTCTTTTCTTT  100

seq1  TTCTTCTCTTTTCTTTCTTTTCTTTCTCGTCGTACTGAGTCCTGCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTTTTCTTTCTTTTCTTTCTCGTCGTACTGAGTCCTGCCTCTC  150

seq1  TGGGGTACCCAGGAACCTGGGAGGGGTCAGGGCAAAGTCCGAATCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACCCAGGAACCTGGGAGGGGTCAGGGCAAAGTCCGAATCAGGGA  200

seq1  GTCCACAATGATTCCTGGTCTTCTCTCTGGCGTACCATCCCAGGGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAATGATTCCTGGTCTTCTCTCTGGCGTACCATCCCAGGGAGTCA  250

seq1  GGAACTGGTCTGCGGTCTTTGCTTCTCCTCAGGGCATCTTTGTGACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGTCTGCGGTCTTTGCTTCTCCTCAGGGCATCTTTGTGACAAGC  300

seq1  AGGAGAGGGGAGATGGAGCCCCACATGAGCAGAATTCAGTCTGATTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGGAGATGGAGCCCCACATGAGCAGAATTCAGTCTGATTAGGA  350

seq1  GTGAGGGGCTGGAGAGGAGGCAGCCTTCTTCTGGAGTCTTAGGCATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGCTGGAGAGGAGGCAGCCTTCTTCTGGAGTCTTAGGCATGGCT  400

seq1  CCTTAGTCAAAGGCCTTCTTCTTGGGTGATCCTTAATGGAGCAGCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCAAAGGCCTTCTTCTTGGGTGATCCTTAATGGAGCAGCTTTCT  450

seq1  GAGACAATCCTTGCTTGTTTTTTATTGCTTTATTTGATGGTGGATGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCCTTGCTTGTTTTTTATTGCTTTATTTGATGGTGGATGTAAA  500

seq1  TGCGTACACTTTATTCGGGATGACCAAGGGGTTATATACCTTTTGGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACACTTTATTCGGGATGACCAAGGGGTTATATACCTTTTGGGGGC  550

seq1  AGGATATCCAGGAAGGGAAGCTCATTGGCTGAAGGCTCAAGGCTATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCCAGGAAGGGAAGCTCATTGGCTGAAGGCTCAAGGCTATCTAG  600

seq1  ACACCTCATTAACATGAAGAAGAATTCCAAGTGTTATGCTATGTGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATTAACATGAAGAAGAATTCCAAGTGTTATGCTATGTGACTGA  650

seq1  CTGTCTGGTCTTCTCAGTGGGGTGTAGTGGTTACATGTTGTAGAGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGTCTTCTCAGTGGGGTGTAGTGGTTACATGTTGTAGAGCAGGT  700

seq1  ACAG  704
      ||||
seq2  ACAG  704