BAC Information

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BAC

Clone NameB6Ng01-315A01
Chromosome1 (Build37)
Map Location 77,057,830 - 77,134,589
singlet/doubletdoublet
Overlap geneLOC100039137, Tfdp1-ps
Upstream genenone
Downstream geneEpha4, LOC100039330, Pax3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315A01.bB6Ng01-315A01.g
ACCGA105769GA105770
length1,0861,125
definitionB6Ng01-315A01.b B6Ng01-315A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,133,484 - 77,134,589)(77,057,830 - 77,058,979)
sequence
gaattcagtagttccttctctctctgctttgaaaggtttcacaatgtccc
ttcactggctctcctgacaattggaatccagtctgtcctaccgagaaacc
cgaatgacccttttcaaagcagtctcttgttagttcatgaaatggggcgt
gcacttcaggaatggcaggccgcacaccccgcctcacggtgggagacttc
agatcactaggatttctgtttccagtcctgacctctttttgaatcctgtt
cctcctaataatcccaacagcttctctgctagtcttcaaagtaaggctac
agagcttatgtcaaagaccctgggggaccatttctcttgttttgtttttg
tttcttaattttccccccattgtcctccagggtaattaaaaggctactat
gtaaattatttgtgagaactgggggttctgtttatttttactactccagt
gtactttttactgtctccatcccattaatatgatggtctatcagactagg
aagaatctgagctttggagcaaatccatgggttttatcatagaagaaatt
acccatagaaacacaacctaacctaacaatctaccattattcaatgtata
ttctttttcctacctttcacccttgtgttgggtttttttttttttgtaca
tacttaccaaaagtagatgaaaggacacatgtctactgcatattagaaaa
attagaaacttgagagtagtattgctccaggcataagcagatatttgagg
tcggctgtaggtcccaggtcaggagcagcttcctaacgggagggggaagg
aaaacccaggagagtgttgtaaaaggtaccctgaacctcctcccctgggg
aaacacgtatactcttatgtcagtggaattaaacgtttgccagttcggga
tttgtgtgtagtgtaatgcagctgcatcaaaggccccacacgatctctga
agactgtgtcatctcttgactattgttccatggaaaatgagcacaaaatc
ttgctaaaagagtaaaaaaagcgtttcccattgatcttattaaatttaat
tgacgcatctgcacttgcactccagccaatgcttat

gaattcagggaagagataggaagggacagcactggaagagaagctgaagc
cagaaacaagttgcaaagcttgattcttttacagccatggagaggtgctg
aactatttagagaagatgcgctacacgtcagaattgctctttgggtacac
gactgaagatctggatgtggatcaggaaatgtttacagcaggattcgtat
gacgagaacatgtccaaagcaaaggaacacacacacacgcacacaaacaa
aaagctgagttccaccatgtaaaatatgacctcattaacataccccttgc
tatgaagaaaattggtgtttcaacccaggttgaactaaagtttacctttg
aattgttgcaaaattgtttaagggaagtgtcgaatggagagactctttta
tagacaagattgctatgcttctgctttttaaagagaagctgctttttttc
tttctttctgacttcagtgcagtcctggggtaaccatttaaacatcaaaa
atgtacttggataattacaaatattgaatgttagttattcattaaggcag
acctggcatttcactgatcttaaaattataaacctgcaatgaaaaaaaaa
aaagcctaacacatcagtaatttagacctggcttctctccaaaggtaggg
tttactttaccggctttaactgatttgctcacaatgttatcaggcaattt
tggaattgtgtagccaaaatctaaatggcttttaatagcctcacagaatt
aatatgtcttctataatgtgcacaatttattccctcatgccagtgcattc
tggttcactgattattagattctgggatcatttgtaggaaaaatagatgt
atgaaagatctcttgtagattttcccctttttgtttgattttgtttattt
tccttgggtctcttctgtagatagtcattcattctcaaatatgggcacat
tgtgtgccagatgtgcatgcatgtgggacctgggtgagaagatttagtct
gtctcaagatccactctatggttagggatactagaagagaatgagatgta
tttaagaatgcataattccgttgcaggagcttaactcagtctgaggactg
taagctagccatcttggacctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77133484_77134589
seq2: B6Ng01-315A01.b_45_1130 (reverse)

seq1  ATAAGCATTGGCTGTGAAGTGC-AGTGCAGATGCTGTCATATTTAAATTT  49
      ||||||||||||  || ||||| ||||||||||| |||| |||  || ||
seq2  ATAAGCATTGGC--TGGAGTGCAAGTGCAGATGC-GTCA-ATT--AAATT  44

seq1  TAAATAGATTCATATGGGGAAACGCTTTTTTTTTTACTCTTTTAGCAAGA  99
      |||  ||||  ||   |||||||||   ||||||||||||||||||||||
seq2  TAATAAGATCAAT---GGGAAACGC---TTTTTTTACTCTTTTAGCAAGA  88

seq1  TTTTTGTGCTCATTTCCCATGGAACCAATAGTCAAGAGATGAACACAGTC  149
       |||||||||||||| |||||||| |||||||||||||||| ||||||||
seq2  -TTTTGTGCTCATTTTCCATGGAA-CAATAGTCAAGAGATG-ACACAGTC  135

seq1  TTTCCAGAGATCGTGTTGGGGCCTTTGATGCAGCTGCATTTACACCTACA  199
      ||  ||||||||||| |||||||||||||||||||||| ||||| |||||
seq2  TT--CAGAGATCGTG-TGGGGCCTTTGATGCAGCTGCA-TTACA-CTACA  180

seq1  CACAAATCCCGAACTGGCAAACGTTTTAATTCCCACTGACATAAGAGTAT  249
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CACAAATCCCGAACTGGCAAACG-TTTAATT-CCACTGACATAAGAGTAT  228

seq1  ACGTGTTT-CCCAGGGGAGGAGGTTCAGGGTACCTTTTACAACACTCTCC  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTTCCCCAGGGGAGGAGGTTCAGGGTACCTTTTACAACACTCTCC  278

seq1  TGGGTTTTCCTTCCCCCTCCCGTTAGGAAGCTGCTCCTGACCTGGGACCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCCTTCCCCCTCCCGTTAGGAAGCTGCTCCTGACCTGGGACCT  328

seq1  ACAGCCGACCTCAAATATCTGCTTATGCCTGGAGCAATACTACTCTCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGACCTCAAATATCTGCTTATGCCTGGAGCAATACTACTCTCAAG  378

seq1  TTTCTAATTTTTCTAATATGCAGTAGACATGTGTCCTTTCATCTACTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTTTTCTAATATGCAGTAGACATGTGTCCTTTCATCTACTTTT  428

seq1  GGTAAGTATGTACAAAAAAAAAAAAACCCAACACAAGGGTGAAAGGTAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTATGTACAAAAAAAAAAAAACCCAACACAAGGGTGAAAGGTAGG  478

seq1  AAAAAGAATATACATTGAATAATGGTAGATTGTTAGGTTAGGTTGTGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATATACATTGAATAATGGTAGATTGTTAGGTTAGGTTGTGTTT  528

seq1  CTATGGGTAATTTCTTCTATGATAAAACCCATGGATTTGCTCCAAAGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGTAATTTCTTCTATGATAAAACCCATGGATTTGCTCCAAAGCTC  578

seq1  AGATTCTTCCTAGTCTGATAGACCATCATATTAATGGGATGGAGACAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTCCTAGTCTGATAGACCATCATATTAATGGGATGGAGACAGTA  628

seq1  AAAAGTACACTGGAGTAGTAAAAATAAACAGAACCCCCAGTTCTCACAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACACTGGAGTAGTAAAAATAAACAGAACCCCCAGTTCTCACAAA  678

seq1  TAATTTACATAGTAGCCTTTTAATTACCCTGGAGGACAATGGGGGGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATAGTAGCCTTTTAATTACCCTGGAGGACAATGGGGGGAAAA  728

seq1  TTAAGAAACAAAAACAAAACAAGAGAAATGGTCCCCCAGGGTCTTTGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACAAAAACAAAACAAGAGAAATGGTCCCCCAGGGTCTTTGACA  778

seq1  TAAGCTCTGTAGCCTTACTTTGAAGACTAGCAGAGAAGCTGTTGGGATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTGTAGCCTTACTTTGAAGACTAGCAGAGAAGCTGTTGGGATTA  828

seq1  TTAGGAGGAACAGGATTCAAAAAGAGGTCAGGACTGGAAACAGAAATCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAACAGGATTCAAAAAGAGGTCAGGACTGGAAACAGAAATCCT  878

seq1  AGTGATCTGAAGTCTCCCACCGTGAGGCGGGGTGTGCGGCCTGCCATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTGAAGTCTCCCACCGTGAGGCGGGGTGTGCGGCCTGCCATTCC  928

seq1  TGAAGTGCACGCCCCATTTCATGAACTAACAAGAGACTGCTTTGAAAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCACGCCCCATTTCATGAACTAACAAGAGACTGCTTTGAAAAGG  978

seq1  GTCATTCGGGTTTCTCGGTAGGACAGACTGGATTCCAATTGTCAGGAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCGGGTTTCTCGGTAGGACAGACTGGATTCCAATTGTCAGGAGAG  1028

seq1  CCAGTGAAGGGACATTGTGAAACCTTTCAAAGCAGAGAGAGAAGGAACTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAGGGACATTGTGAAACCTTTCAAAGCAGAGAGAGAAGGAACTA  1078

seq1  CTGAATTC  1106
      ||||||||
seq2  CTGAATTC  1086


seq1: chr1_77057830_77058979
seq2: B6Ng01-315A01.g_65_1189

seq1  GAATTCAGGGAAGAGATAGGAAGGGACAGCACTGGAAGAGAAGCTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAGAGATAGGAAGGGACAGCACTGGAAGAGAAGCTGAAGC  50

seq1  CAGAAACAAGTTGCAAAGCTTGATTCTTTTACAGCCATGGAGAGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAGTTGCAAAGCTTGATTCTTTTACAGCCATGGAGAGGTGCTG  100

seq1  AACTATTTAGAGAAGATGCGCTACACGTCAGAATTGCTCTTTGGGTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTAGAGAAGATGCGCTACACGTCAGAATTGCTCTTTGGGTACAC  150

seq1  GACTGAAGATCTGGATGTGGATCAGGAAATGTTTACAGCAGGATTCGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGATCTGGATGTGGATCAGGAAATGTTTACAGCAGGATTCGTAT  200

seq1  GACGAGAACATGTCCAAAGCAAAGGAACACACACACACGCACACAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGAACATGTCCAAAGCAAAGGAACACACACACACGCACACAAACAA  250

seq1  AAAGCTGAGTTCCACCATGTAAAATATGACCTCATTAACATACCCCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGTTCCACCATGTAAAATATGACCTCATTAACATACCCCTTGC  300

seq1  TATGAAGAAAATTGGTGTTTCAACCCAGGTTGAACTAAAGTTTACCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAAAATTGGTGTTTCAACCCAGGTTGAACTAAAGTTTACCTTTG  350

seq1  AATTGTTGCAAAATTGTTTAAGGGAAGTGTCGAATGGAGAGACTCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGCAAAATTGTTTAAGGGAAGTGTCGAATGGAGAGACTCTTTTA  400

seq1  TAGACAAGATTGCTATGCTTCTGCTTTTTAAAGAGAAGCTGCTTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGATTGCTATGCTTCTGCTTTTTAAAGAGAAGCTGCTTTTTTTC  450

seq1  TTTCTTTCTGACTTCAGTGCAGTCCTGGGGTAACCATTTAAACATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGACTTCAGTGCAGTCCTGGGGTAACCATTTAAACATCAAAA  500

seq1  ATGTACTTGGATAATTACAAATATTGAATGTTAGTTATTCATTAAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGGATAATTACAAATATTGAATGTTAGTTATTCATTAAGGCAG  550

seq1  ACCTGGCATTTCACTGATCTTAAAATTATAAACCTGCAATGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCATTTCACTGATCTTAAAATTATAAACCTGCAATGAAAAAAAAA  600

seq1  AAAGCCTAACACATCAGTAATTTAGACCTGGCTTCTCTCCAAAGGTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAACACATCAGTAATTTAGACCTGGCTTCTCTCCAAAGGTAGGG  650

seq1  TTTACTTTACCGGCTTTAACTGATTTGCTCACAATGTTATCAGGCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTACCGGCTTTAACTGATTTGCTCACAATGTTATCAGGCAATTT  700

seq1  TGGAATTGTGTAGCCAAAATCTAAATGGCTTTTAATAGCCTCACAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGTGTAGCCAAAATCTAAATGGCTTTTAATAGCCTCACAGAATT  750

seq1  AATATGTCTTCTATAATGTGCACAATTTATTCCCTCATGCCAGTGCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCTTCTATAATGTGCACAATTTATTCCCTCATGCCAGTGCATTC  800

seq1  TGGTTCACTGATTATTAGATTCTGGGATCATTTGTAGGAAAAATAGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACTGATTATTAGATTCTGGGATCATTTGTAGGAAAAATAGATGT  850

seq1  ATGAAAGATCTCTTGTAGATTTTCCCCTTTTTGTTTGATTTTGTTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGATCTCTTGTAGATTTTCCCCTTTTTGTTTGATTTTGTTTATTT  900

seq1  TCCTTGGGTCTCTTCTGTAGATAGTCATTCATTTCTCAAATATTGGGCAC  950
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TCCTTGGGTCTCTTCTGTAGATAGTCATTCA-TTCTCAAATA-TGGGCAC  948

seq1  ATTGTGTGCCAGATGTTGCAATGCATTGTGGGACCTGGGTGAAGAAGATT  1000
      ||||||||||||||| ||| ||||| ||||||||||||||| ||||||||
seq2  ATTGTGTGCCAGATG-TGC-ATGCA-TGTGGGACCTGGGTG-AGAAGATT  994

seq1  TAGTTCTTGTCTTCAAAGGATCCACCCTATGGTAAGGGATACTAGAAGAG  1050
      ||||   |||| ||||  ||||||| ||||||| ||||||||||||||||
seq2  TAGT--CTGTC-TCAA--GATCCACTCTATGGTTAGGGATACTAGAAGAG  1039

seq1  AAATGAGATGTATTTAAAGGATGCAATAAATCCCGTGGCAGGAGCTTAAC  1100
       |||||||||||||| ||| |||||   ||| |||| |||||||||||||
seq2  -AATGAGATGTATTT-AAGAATGCA--TAATTCCGTTGCAGGAGCTTAAC  1085

seq1  TCAGGTCTTGAGGAACATGGAAAAGCTAGCCCCAACCTGTGGACCTAGCT  1150
      ||| ||| ||||||   |    |||||||||   | || |||||||||||
seq2  TCA-GTC-TGAGGACTGT----AAGCTAGCC---ATCT-TGGACCTAGCT  1125


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