BAC Information

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BAC

Clone NameB6Ng01-315G13
Chromosome1 (Build37)
Map Location 89,552,392 - 89,694,700
singlet/doubletdoublet
Overlap geneInpp5d, Atg16l1
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneSag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315G13.bB6Ng01-315G13.g
ACCGA106068GA106069
length5141,107
definitionB6Ng01-315G13.b B6Ng01-315G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,552,392 - 89,552,911)(89,693,583 - 89,694,700)
sequence
tcattttacccagtggattgtaactatcttcattattcatttcaatgttc
agagtgtactggctgctcctcctgctacacttggtggttcctggctcttt
ttgacaaattgtcttcccgttcaaagcatggcttttctccctagaaccta
ctagtgcagtggccctttaatatagttcttcatgctgtggtgacccccaa
tcataaaactaatttcattgctacttcattaactataattttgctactgt
tatacatcagaaggtaaatatttttgaagatagaggtttgccaaaggggt
cacaaccaatagtttgagaacctctactctagaaatatatatctcaggtt
ctgctgtgccttcccagccccagattgtaggctcttagctgaatttaaga
acctctgggtctttgtaatggggaaagcacccaagatgtgaacagtgctc
attgctgttagtctctgccctctcagcagacagaaccaagaaggtggggg
aggaagtgtgtgtg

gaattcagttcccagtacccacactgggtagacacagacacacacagaca
cacacagacacacatacacaggcacctataactccagacacacacacagt
ctttcatctttctcttagatttcttcttggagttgaatggcctgaacctc
cattccaggcatcctgatcacaagggacctttctctggagtcacccacag
ggagcagcagctccaagccctgtgtctcaaccttaaacactaaggtcagg
gcttgtgggggaggggtggtgctatggccttgtcatcttaggggacacat
ggtggaggaaagcaggtactgtgctaaatatcaactgcaaataaagatgg
catgtcctccggcagagctttatggagcaaacattaggaagtctgaagag
gctgccatttttgaagacttatcagggaacacgagcttttaaaagccatc
agctgaagctagagactcagcagtaagaatgctggttgctcttccagagg
acctgggttagatccccagtacacactgactacacaggggctcacagctg
catgtaactccagttccaggggtgtgatacccttttctggcctccgaagg
catcaggcatgcaagcagtatacagacatgcgtgcaggcaaaaggctcaa
atataaaatacaatactgagaaaaatgaaaattatcacttcaatccctac
ttgtatctcttaattaatcctccatagaacatagggctgtttggggtggg
actggctaatattatgaaaacataattcacaaactctcatagtagcaaga
ccttacaaataaaatcaagtccacactccagcttttctttggatttcttg
tgcattattctcaacactttactgagtgcttttcaagattgggaatcact
aactcataacacacttatttttggtctcactctgcagccttgactggtct
ttaactctggactcagcctccaatggcttacaggcatgtgccattacagt
ttgttgcaggagacttattgtatgaattgctttcttcatcttctcccatg
gatcaggtaatctttcctcccttgtgccaataatctatggatgagcataa
ggatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89552392_89552911
seq2: B6Ng01-315G13.b_47_566

seq1  GAATTCTCATTTTACCCAGTGGATTGTAACTATCTTCATTATTCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTACCCAGTGGATTGTAACTATCTTCATTATTCATTTCA  50

seq1  ATGTTCAGAGTGTACTGGCTGCTCCTCCTGCTACACTTGGTGGTTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGAGTGTACTGGCTGCTCCTCCTGCTACACTTGGTGGTTCCTGG  100

seq1  CTCTTTTTGACAAATTGTCTTCCCGTTCAAAGCATGGCTTTTCTCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGACAAATTGTCTTCCCGTTCAAAGCATGGCTTTTCTCCCTAG  150

seq1  AACCTACTAGTGCAGTGGCCCTTTAATATAGTTCTTCATGCTGTGGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTAGTGCAGTGGCCCTTTAATATAGTTCTTCATGCTGTGGTGAC  200

seq1  CCCCAATCATAAAACTAATTTCATTGCTACTTCATTAACTATAATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCATAAAACTAATTTCATTGCTACTTCATTAACTATAATTTTGC  250

seq1  TACTGTTATACATCAGAAGGTAAATATTTTTGAAGATAGAGGTTTGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTATACATCAGAAGGTAAATATTTTTGAAGATAGAGGTTTGCCAA  300

seq1  AGGGGTCACAACCAATAGTTTGAGAACCTCTACTCTAGAAATATATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCACAACCAATAGTTTGAGAACCTCTACTCTAGAAATATATATCT  350

seq1  CAGGTTCTGCTGTGCCTTCCCAGCCCCAGATTGTAGGCTCTTAGCTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTGCTGTGCCTTCCCAGCCCCAGATTGTAGGCTCTTAGCTGAAT  400

seq1  TTAAGAACCTCTGGGTCTTTGTAATGGGGAAAGCACCCAAGATGTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCTCTGGGTCTTTGTAATGGGGAAAGCACCCAAGATGTGAACA  450

seq1  GTGCTCATTGCTGTTAGTCTCTGCCCTCTCAGCAGACAGAACCAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATTGCTGTTAGTCTCTGCCCTCTCAGCAGACAGAACCAAGAAGG  500

seq1  TGGGGGAGGAAGTGTGTGTG  520
      ||||||||||||||||||||
seq2  TGGGGGAGGAAGTGTGTGTG  520


seq1: chr1_89693583_89694700
seq2: B6Ng01-315G13.g_67_1173 (reverse)

seq1  AGTATCCTTATGCTCAT-CATAGATAAATTTGCACAAGGGA-GAAAGATT  48
      ||||||||||||||||| |||||||  ||| |||||||||| ||||||||
seq2  AGTATCCTTATGCTCATCCATAGAT-TATTGGCACAAGGGAGGAAAGATT  49

seq1  AACTTGGACCAATGGGGAGAAGTAGAAGAAAAGCCAATTTCATACCAATA  98
      | ||  || | || ||||||||  |||| |||||  | |||||| |||||
seq2  ACCT--GATCCAT-GGGAGAAGATGAAG-AAAGC--AATTCATA-CAATA  92

seq1  GTCCTCCTGCAACCAAACTGTAATGGCACATGCCTGTAAGCCCATTTGGG  148
         ||||||||| ||||||||||||||||||||||||||| |||||  ||
seq2  AGTCTCCTGCAA-CAAACTGTAATGGCACATGCCTGTAAG-CCATT--GG  138

seq1  AGGCTGAGGTCCAGAGTTAAAGACCAGTCAAGGCTGCAGAGTGAGACCAA  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGA-GTCCAGAGTTAAAGACCAGTCAAGGCTGCAGAGTGAGACCAA  187

seq1  AAATAAGTGTGTTATGAGTTAGTGATTTCCCAATCTTG-AAAGCACTCAG  247
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AAATAAGTGTGTTATGAGTTAGTGA-TTCCCAATCTTGAAAAGCACTCAG  236

seq1  TAAAGTGTTGAGAATAATGCACAAGAAATCCAAAGAAAAGCTGGAGTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTTGAGAATAATGCACAAGAAATCCAAAGAAAAGCTGGAGTGTG  286

seq1  GACTTGATTTTATTTGTAAGGTCTTGCTACTATGAGAGTTTGTGAATTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATTTTATTTGTAAGGTCTTGCTACTATGAGAGTTTGTGAATTAT  336

seq1  GTTTTCATAATATTAGCCAGTCCCACCCCAAACAGCCCTCTGTTCTATGG  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTCATAATATTAGCCAGTCCCACCCCAAACAGCCCTATGTTCTATGG  386

seq1  AGGATTAATTAAGAGATACAAGTAGGGATTGAAGTGATAATTTTCATTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAATTAAGAGATACAAGTAGGGATTGAAGTGATAATTTTCATTTT  436

seq1  TCTCAGTATTGTATTTTATATTTGAGCCTTTTGCCTGCACGCATGTCTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTATTGTATTTTATATTTGAGCCTTTTGCCTGCACGCATGTCTGT  486

seq1  ATACTGCTTGCATGCCTGATGCCTTCGGAGGCCAGAAAAGGGTATCACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTTGCATGCCTGATGCCTTCGGAGGCCAGAAAAGGGTATCACAC  536

seq1  CCCTGGAACTGGAGTTACATGCAGCTGTGAGCCCCTGTGTAGTCAGTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACTGGAGTTACATGCAGCTGTGAGCCCCTGTGTAGTCAGTGTG  586

seq1  TACTGGGGATCTAACCCAGGTCCTCTGGAAGAGCAACCAGCATTCTTACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGATCTAACCCAGGTCCTCTGGAAGAGCAACCAGCATTCTTACT  636

seq1  GCTGAGTCTCTAGCTTCAGCTGATGGCTTTTAAAAGCTCGTGTTCCCTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCTCTAGCTTCAGCTGATGGCTTTTAAAAGCTCGTGTTCCCTGA  686

seq1  TAAGTCTTCAAAAATGGCAGCCTCTTCAGACTTCCTAATGTTTGCTCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTCAAAAATGGCAGCCTCTTCAGACTTCCTAATGTTTGCTCCAT  736

seq1  AAAGCTCTGCCGGAGGACATGCCATCTTTATTTGCAGTTGATATTTAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTGCCGGAGGACATGCCATCTTTATTTGCAGTTGATATTTAGCA  786

seq1  CAGTACCTGCTTTCCTCCACCATGTGTCCCCTAAGATGACAAGGCCATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTGCTTTCCTCCACCATGTGTCCCCTAAGATGACAAGGCCATAG  836

seq1  CACCACCCCTCCCCCACAAGCCCTGACCTTAGTGTTTAAGGTTGAGACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCTCCCCCACAAGCCCTGACCTTAGTGTTTAAGGTTGAGACAC  886

seq1  AGGGCTTGGAGCTGCTGCTCCCTGTGGGTGACTCCAGAGAAAGGTCCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGGAGCTGCTGCTCCCTGTGGGTGACTCCAGAGAAAGGTCCCTT  936

seq1  GTGATCAGGATGCCTGGAATGGAGGTTCAGGCCATTCAACTCCAAGAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGGATGCCTGGAATGGAGGTTCAGGCCATTCAACTCCAAGAAGA  986

seq1  AATCTAAGAGAAAGATGAAAGACTGTGTGTGTGTCTGGAGTTATAGGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAGAAAGATGAAAGACTGTGTGTGTGTCTGGAGTTATAGGTGC  1036

seq1  CTGTGTATGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTCTACCCAGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTCTACCCAGTG  1086

seq1  TGGGTACTGGGAACTGAATTC  1118
      |||||||||||||||||||||
seq2  TGGGTACTGGGAACTGAATTC  1107


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