BAC Information

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BAC

Clone NameB6Ng01-315J04
Chromosome1 (Build37)
Map Location 161,255,845 - 161,423,527
singlet/doubletdoublet
Overlap geneRfwd2, EG620484
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315J04.bB6Ng01-315J04.g
ACCGA106190GA106191
length4611,131
definitionB6Ng01-315J04.b B6Ng01-315J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,423,061 - 161,423,527)(161,255,845 - 161,256,972)
sequence
ttagtcatgttcatccacacagcccatacagaagtgtctgattctatcac
tcaaagatttttgccacagtcaatggaaatgatctgcttgtgtgcctgtt
tgcaggtttctgaaggaaaatgggcatattttatttatctgtgaccccta
ctttagcccaaaccctagagtagtggaggcaacctagtaacactgttcga
acattccaagtgcccatttgcccttgaaaataacatctcgaggaaatctt
ggtatagaagtcctatttagttatctcttaattccatatctcagccagtg
gaagaactgaacacaatcatatgactaagcccactataaatattcagtgc
cttccaatggcatcatccaagttaagatacagggagctggtttgtatatt
cctggaatctatgtttaaagacaatgcagtaagtcctagcatgcggggtg
gggtggggggt

gaattcttcatgccagtgccttgaattttgctttgtaccttcaccttcac
cccagttggtctaaataagaattgggtgatttggcaagacaaaaaaggac
aaaaaatattcttaactgagctttccaagggagttatgtgggtaattaat
taatgagcttaaattaggtagtagctaaagtgtagtcactctttagaata
aatataataggcagtaaataacctaaaaatgtagtacattgtaaaaggaa
acataagagaacatccattgcaaccctggaatgaaacagattaaagtgcg
tttcttaaagatttagttagttagtttatgtatatgagtattctgcctac
atgcatgccagaagagggcatcagatcccattagaaatggttgtgagcca
ctatgtggttgctgggaattgaactcaggacctctggaagaccagccatt
gcacttcacctctgatgtccaacccctaaagcacatttctaaaagacctc
aaatgctcaaatcaaaccgtttagatcttggaattattcacttacagcct
tgtgaacctcagttttctcatctccaaaatggggctaacaatagcactaa
gttttttaatctttaataaagtaggtaaaacctgtatcgaagtgtcctat
tcagtgatgatagatgtaattaaaaagatttaattatgtagtccttaata
tattgacatattcccttaacgaaagtataagaaagcaaatcagtatggga
aagcagtttgcaaaatggtatcagttttaaaattgcctttgtctattaga
attactagtgatttttttttttttcaaaaaaagaggttgttttgggtaag
caactagatttatatatttctttgagcacaatagactgcatcattgtagc
agcaacaataccttcttacctgtagggatagcatgaaaaaataattatgt
cctactgtaccagtaactccaccagttgacagatcaatcaccagtgagag
catgagggtcctccctgaagtgagaaccacatctctcaagccaagtctat
tattcattaatggtatgttggatgcttggattggaccattaatgccttgc
tcctgcatacccaggcctacgtcaagcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161423061_161423527
seq2: B6Ng01-315J04.b_46_512 (reverse)

seq1  ACCCCCCACCCCACCCCGCATGCTAGGACTTACTGCATTGTCTTTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACCCCACCCCGCATGCTAGGACTTACTGCATTGTCTTTAAACA  50

seq1  TAGATTCCAGGAATATACAAACCAGCTCCCTGTATCTTAACTTGGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCAGGAATATACAAACCAGCTCCCTGTATCTTAACTTGGATGAT  100

seq1  GCCATTGGAAGGCACTGAATATTTATAGTGGGCTTAGTCATATGATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGAAGGCACTGAATATTTATAGTGGGCTTAGTCATATGATTGTG  150

seq1  TTCAGTTCTTCCACTGGCTGAGATATGGAATTAAGAGATAACTAAATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTTCCACTGGCTGAGATATGGAATTAAGAGATAACTAAATAGG  200

seq1  ACTTCTATACCAAGATTTCCTCGAGATGTTATTTTCAAGGGCAAATGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATACCAAGATTTCCTCGAGATGTTATTTTCAAGGGCAAATGGGC  250

seq1  ACTTGGAATGTTCGAACAGTGTTACTAGGTTGCCTCCACTACTCTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATGTTCGAACAGTGTTACTAGGTTGCCTCCACTACTCTAGGGT  300

seq1  TTGGGCTAAAGTAGGGGTCACAGATAAATAAAATATGCCCATTTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAAAGTAGGGGTCACAGATAAATAAAATATGCCCATTTTCCTTC  350

seq1  AGAAACCTGCAAACAGGCACACAAGCAGATCATTTCCATTGACTGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGCAAACAGGCACACAAGCAGATCATTTCCATTGACTGTGGCA  400

seq1  AAAATCTTTGAGTGATAGAATCAGACACTTCTGTATGGGCTGTGTGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTGAGTGATAGAATCAGACACTTCTGTATGGGCTGTGTGGATG  450

seq1  AACATGACTAAGAATTC  467
      |||||||||||||||||
seq2  AACATGACTAAGAATTC  467


seq1: chr1_161255845_161256972
seq2: B6Ng01-315J04.g_68_1198

seq1  GAATTCTTCATGCCAGTGCCTTGAATTTTGCTTTGTACCTTCACCTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGCCAGTGCCTTGAATTTTGCTTTGTACCTTCACCTTCAC  50

seq1  CCCAGTTGGTCTAAATAAGAATTGGGTGATTTGGCAAGACAAAAAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGTCTAAATAAGAATTGGGTGATTTGGCAAGACAAAAAAGGAC  100

seq1  AAAAAATATTCTTAACTGAGCTTTCCAAGGGAGTTATGTGGGTAATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTCTTAACTGAGCTTTCCAAGGGAGTTATGTGGGTAATTAAT  150

seq1  TAATGAGCTTAAATTAGGTAGTAGCTAAAGTGTAGTCACTCTTTAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCTTAAATTAGGTAGTAGCTAAAGTGTAGTCACTCTTTAGAATA  200

seq1  AATATAATAGGCAGTAAATAACCTAAAAATGTAGTACATTGTAAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAGGCAGTAAATAACCTAAAAATGTAGTACATTGTAAAAGGAA  250

seq1  ACATAAGAGAACATCCATTGCAACCCTGGAATGAAACAGATTAAAGTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAGAACATCCATTGCAACCCTGGAATGAAACAGATTAAAGTGCG  300

seq1  TTTCTTAAAGATTTAGTTAGTTAGTTTATGTATATGAGTATTCTGCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAGATTTAGTTAGTTAGTTTATGTATATGAGTATTCTGCCTAC  350

seq1  ATGCATGCCAGAAGAGGGCATCAGATCCCATTAGAAATGGTTGTGAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCCAGAAGAGGGCATCAGATCCCATTAGAAATGGTTGTGAGCCA  400

seq1  CTATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGACCAGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGACCAGCCATT  450

seq1  GCACTTCACCTCTGATGTCCAACCCCTAAAGCACATTTCTAAAAGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCACCTCTGATGTCCAACCCCTAAAGCACATTTCTAAAAGACCTC  500

seq1  AAATGCTCAAATCAAACCGTTTAGATCTTGGAATTATTCACTTACAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCAAATCAAACCGTTTAGATCTTGGAATTATTCACTTACAGCCT  550

seq1  TGTGAACCTCAGTTTTCTCATCTCCAAAATGGGGCTAACAATAGCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCTCAGTTTTCTCATCTCCAAAATGGGGCTAACAATAGCACTAA  600

seq1  GTTTTTTAATCTTTAATAAAGTAGGTAAAACCTGTATCGAAGTGTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAATCTTTAATAAAGTAGGTAAAACCTGTATCGAAGTGTCCTAT  650

seq1  TCAGTGATGATAGATGTAATTAAAAAGATTTAATTATGTAGTCCTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATGATAGATGTAATTAAAAAGATTTAATTATGTAGTCCTTAATA  700

seq1  TATTGACATATTCCCTTAACGAAAGTATAAGAAAGCAAATCAGTATGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACATATTCCCTTAACGAAAGTATAAGAAAGCAAATCAGTATGGGA  750

seq1  AAGCAGTTTGCAAAATGGTATCAGTTTTAAAATTGCCTTTGTCTATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGCAAAATGGTATCAGTTTTAAAATTGCCTTTGTCTATTAGA  800

seq1  ATTACTAGTGATTTTTTTTTTTTTCAAAAAAAGAGGTTGTTTTGGGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAGTGATTTTTTTTTTTTTCAAAAAAAGAGGTTGTTTTGGGTAAG  850

seq1  CAACTAGATTTATATA-TTCTTTGAGCACAATAGACTGCATCA-TGTAGC  898
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CAACTAGATTTATATATTTCTTTGAGCACAATAGACTGCATCATTGTAGC  900

seq1  AGCAACAATACC-TCTTACCTGTAGGGGATAGCATGAAAATA-ATTTATG  946
      |||||||||||| ||||||||||| ||||||||||||||| | | |||||
seq2  AGCAACAATACCTTCTTACCTGTA-GGGATAGCATGAAAAAATAATTATG  949

seq1  T-CTACTGTACCAGTAACT-CACCAGTTGACAGATCAATCA-CAGTGAGA  993
      | ||||||||||||||||| ||||||||||||||||||||| ||||||| 
seq2  TCCTACTGTACCAGTAACTCCACCAGTTGACAGATCAATCACCAGTGAG-  998

seq1  AGCATGAGGGT-CTCCCTGAAGTGAGA--CACATCTCTCAGGGCAAAGTC  1040
      ||||||||||| |||||||||||||||  |||||||||||  || |||||
seq2  AGCATGAGGGTCCTCCCTGAAGTGAGAACCACATCTCTCA-AGCCAAGTC  1047

seq1  TAATTATTTATTAATGTAATGGTGGGATGCTGGGATTGGACCCATTAATG  1090
      | |||||| |||||||  || || ||||||| |||||||| |||||||||
seq2  T-ATTATTCATTAATGGTAT-GTTGGATGCTTGGATTGGA-CCATTAATG  1094

seq1  -CTTGCTTTCTGCATACCCAGGCATTACTGAAAGCATGT  1128
       ||||| | ||||||||||||||  |||   ||||||||
seq2  CCTTGC-TCCTGCATACCCAGGC-CTACGTCAAGCATGT  1131


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