BAC Information

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BAC

Clone NameB6Ng01-315K12
Chromosome1 (Build37)
Map Location 172,959,123 - 173,080,067
singlet/doubletdoublet
Overlap geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Downstream geneMpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315K12.bB6Ng01-315K12.g
ACCGA106243GA106244
length1,1351,025
definitionB6Ng01-315K12.b B6Ng01-315K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,078,955 - 173,080,067)(172,959,123 - 172,960,141)
sequence
gaattcttcactcattagctatcatccacagagcctttatagttgtaagg
gctagtgacatttctggtacaaatcccaacccagttttgtgccagtccta
tttttggaaattatttgttatggaaagttagcttcagtgctgttgagatt
ccagaccccgattctcccaaatatgttttcatttctctttccacttctgt
catgcagtataaaaatagagggattctgtttagtctttctttgtaaaagt
gagtcttggggagtttggattggttatctttatcctttatttttatcttg
ctgcgcatcctcatagccgaaggacaggaccaggttttccagagctgtat
ctttcatccctaattttgaccataattaaatgctttcaaattctatgatg
taacacatgctggtgaatgttagggcatatcaggtcaatggtttaacatt
tagcttaaaatgatcatattggttccaggcatttatcttaggagtttcgg
gattagtatgtagagtcttcatctttgggttcttcctggatctagccagt
ctcacatggaaattatttgaaaagcaaattcccaaagcagtttgagtgtg
ttacctgccaagcattacactgagtccctgggaggggactgtgggtgtgt
cctgctgtcaccttccgtcagtcagatattctgtcatcccagcactaaga
attattttacctcaccttctgtcctcatgtagattggttgtgtctacaag
taattttttttccatatttttgtgtatggattgtacataagtagctctcc
ccaccccattttaccttaaaccatagagtgtaacatacagaaatatttaa
attataataggcattataagtatacagaaattactgggaagtataagaga
atgttgcacagggcatatgtaaatgccacaccatttttaacataattgac
ttaattcagctgctttgtggaggcacaccccaccctttctcagcaactta
agagactgaggcaggaaggcctgcctgtaatattgaagccagccttgagc
tatagagtggagttgctgggcagcctgggcttgtagaatgtcgtaccttg
tctcctaaaacaataccctttgccttcagctataa
gaattctcccaggctctcccttctattccctggacctggttcccagcggg
tgtcagaggcaatctgatggtgttgatctctctgtttcctccaaacccct
gccttaatgacagccatctttcttgtctctcaattctcttcctagatcca
gggtctccatccatgtttccaccgtggcatcaaatcacattctgcctgct
gataggactcttgtttgcaatagacacagtgctgtatttctctgtgcgga
ggggtcttcaaagtcctgtggctgactatgaggaacccaagattcaatgg
agcaaggaacctcaggacaagtgagctcttatcgcatgcgatgataagag
caatggtgtagaacccatgagcctccctgggagcttgcaacctcaccagc
tgcattggtcaccatgctttgagcagcagaaataatacaaaggccccttc
cccaactgttttttgtttgtttgtttgtttgttttgttttgttttttggt
gttgtatgttcatttgtttgtttgtctctctccaatggactatctcaggg
gaaagggaaagcctgaggtcttcaaggaccaacagtgatacagcaatgcg
cacgcagctaccctcccaagaagcgattcttcagaattttacactttctc
tgccccaaacattccattagagcaaagcagcagcctggactctgggtggc
gatggcgatcctttccgtgcttagccattgctcctaaataaacttctgtc
gaaaagggaatggctgcttgagccagtgcagcagcttttctgtgtcttcc
tcgggtctggttgccttctgggaacccccagatttcctccagagtgtggg
aagtcctgcggacctaggcagtgcagctgaactcatgaagtaaacagtta
agagctggggaaggggaaggtagcatccccttccctgagcagagcccggt
tgatatatctgggggaagggaagtcccttttctcacttgtagctcttggt
aagtggttcatacccaccactctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173078955_173080067
seq2: B6Ng01-315K12.b_48_1182 (reverse)

seq1  TTATAGCTGGAAGC-AAGTGT-TTGTTTT--GAGACA--GTACCACATTC  44
      ||||||||| | || ||| || |||||||  ||||||  |||| ||||||
seq2  TTATAGCTGAAGGCAAAGGGTATTGTTTTAGGAGACAAGGTACGACATTC  50

seq1  TAC-AGCCCAGGCTGGCCAGCAACT-CACTCTATAGCTC-AGGCTGGCTT  91
      ||| ||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  TACAAGCCCAGGCTGCCCAGCAACTCCACTCTATAGCTCAAGGCTGGCTT  100

seq1  CAATATTACA-GCA-GCCCTCCTGCCTCAGTCTCCTAAG-TGCTGAG-AA  137
      |||||||||| ||| ||| ||||||||||||||| |||| ||||||| ||
seq2  CAATATTACAGGCAGGCCTTCCTGCCTCAGTCTCTTAAGTTGCTGAGAAA  150

seq1  GGGTGGGGTGTGCCTCCAC-AAGCAGCTG-ATTAAGTCATTTATGT--AA  183
      ||||||||||||||||||| ||||||||| ||||||||| ||||||  ||
seq2  GGGTGGGGTGTGCCTCCACAAAGCAGCTGAATTAAGTCAATTATGTTAAA  200

seq1  AATGGTGTGGCATTTACATATGCCCTGTGC-ACATTCTCTTATACTT-CC  231
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AATGGTGTGGCATTTACATATGCCCTGTGCAACATTCTCTTATACTTCCC  250

seq1  AGTAATTTCTGTATTACTTATAATGCCTATTATAATTTAAATA-TTCTGT  280
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AGTAATTTCTGTA-TACTTATAATGCCTATTATAATTTAAATATTTCTGT  299

seq1  ATGTTACACTCTATGGTTTAAGGT-AAATGGGGTGGGGAGAGCTACTTAT  329
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTTACACTCTATGGTTTAAGGTAAAATGGGGTGGGGAGAGCTACTTAT  349

seq1  GTACAATCCATACACAAAAATATGG-AAAAAAATTACTTGTAGACACAAC  378
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTACAATCCATACACAAAAATATGGAAAAAAAATTACTTGTAGACACAAC  399

seq1  CAATCTACATGAGGACAGAAGGTGAGGT-AAATAATTCTTAGTGCTGGGA  427
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAATCTACATGAGGACAGAAGGTGAGGTAAAATAATTCTTAGTGCTGGGA  449

seq1  TGACAGAATATCTGACTGACGGAAGGTGACAGCAGGACACACCCACAGTC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAATATCTGACTGACGGAAGGTGACAGCAGGACACACCCACAGTC  499

seq1  CCCTCCCAGGGACTCAGTGTAATGCTTGGCAGGTAACACACTCAAACTGC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAGGGACTCAGTGTAATGCTTGGCAGGTAACACACTCAAACTGC  549

seq1  TTTGGGAATTTGCTTTTCAAATAATTTCCATGTGAGACTGGCTAGATCCA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAATTTGCTTTTCAAATAATTTCCATGTGAGACTGGCTAGATCCA  599

seq1  GGAAGAACCCAAAGATGAAGACTCTACATACTAATCCCGAAACTCCTAAG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACCCAAAGATGAAGACTCTACATACTAATCCCGAAACTCCTAAG  649

seq1  ATAAATGCCTGGAACCAATATGATCATTTTAAGCTAAATGTTAAACCATT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCCTGGAACCAATATGATCATTTTAAGCTAAATGTTAAACCATT  699

seq1  GACCTGATATGCCCTAACATTCACCAGCATGTGTTACATCATAGAATTTG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATATGCCCTAACATTCACCAGCATGTGTTACATCATAGAATTTG  749

seq1  AAAGCATTTAATTATGGTCAAAATTAGGGATGAAAGATACAGCTCTGGAA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTAATTATGGTCAAAATTAGGGATGAAAGATACAGCTCTGGAA  799

seq1  AACCTGGTCCTGTCCTTCGGCTATGAGGATGCGCAGCAAGATAAAAATAA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTCCTGTCCTTCGGCTATGAGGATGCGCAGCAAGATAAAAATAA  849

seq1  AGGATAAAGATAACCAATCCAAACTCCCCAAGACTCACTTTTACAAAGAA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAGATAACCAATCCAAACTCCCCAAGACTCACTTTTACAAAGAA  899

seq1  AGACTAAACAGAATCCCTCTATTTTTATACTGCATGACAGAAGTGGAAAG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAACAGAATCCCTCTATTTTTATACTGCATGACAGAAGTGGAAAG  949

seq1  AGAAATGAAAACATATTTGGGAGAATCGGGGTCTGGAATCTCAACAGCAC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAAACATATTTGGGAGAATCGGGGTCTGGAATCTCAACAGCAC  999

seq1  TGAAGCTAACTTTCCATAACAAATAATTTCCAAAAATAGGACTGGCACAA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAACTTTCCATAACAAATAATTTCCAAAAATAGGACTGGCACAA  1049

seq1  AACTGGGTTGGGATTTGTACCAGAAATGTCACTAGCCCTTACAACTATAA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTTGGGATTTGTACCAGAAATGTCACTAGCCCTTACAACTATAA  1099

seq1  AGGCTCTGTGGATGATAGCTAATGAGTGAAGAATTC  1113
      ||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGGATGATAGCTAATGAGTGAAGAATTC  1135

seq1: chr1_172959123_172960141
seq2: B6Ng01-315K12.g_69_1093

seq1  GAATTCTCCCAGGCTCTCCCTTCTATTCCCTGGACCTGGTTCCCAGCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGGCTCTCCCTTCTATTCCCTGGACCTGGTTCCCAGCGGG  50

seq1  TGTCAGAGGCAATCTGATGGTGTTGATCTCTCTGTTTCCTCCAAACCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGCAATCTGATGGTGTTGATCTCTCTGTTTCCTCCAAACCCCT  100

seq1  GCCTTAATGACAGCCATCTTTCTTGTCTCTCAATTCTCTTCCTAGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATGACAGCCATCTTTCTTGTCTCTCAATTCTCTTCCTAGATCCA  150

seq1  GGGTCTCCATCCATGTTTCCACCGTGGCATCAAATCACATTCTGCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCCATCCATGTTTCCACCGTGGCATCAAATCACATTCTGCCTGCT  200

seq1  GATAGGACTCTTGTTTGCAATAGACACAGTGCTGTATTTCTCTGTGCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACTCTTGTTTGCAATAGACACAGTGCTGTATTTCTCTGTGCGGA  250

seq1  GGGGTCTTCAAAGTCCTGTGGCTGACTATGAGGAACCCAAGATTCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTCAAAGTCCTGTGGCTGACTATGAGGAACCCAAGATTCAATGG  300

seq1  AGCAAGGAACCTCAGGACAAGTGAGCTCTTATCGCATGCGATGATAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAACCTCAGGACAAGTGAGCTCTTATCGCATGCGATGATAAGAG  350

seq1  CAATGGTGTAGAACCCATGAGCCTCCCTGGGAGCTTGCAACCTCACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGTAGAACCCATGAGCCTCCCTGGGAGCTTGCAACCTCACCAGC  400

seq1  TGCATTGGTCACCATGCTTTGAGCAGCAGAAATAATACAAAGGCCCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGTCACCATGCTTTGAGCAGCAGAAATAATACAAAGGCCCCTTC  450

seq1  CCCAACTGTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTGGT  500

seq1  GTTGTATGTTCATTTGTTTGTTTGTCTCTCTCCAATGGACTATCTCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTTCATTTGTTTGTTTGTCTCTCTCCAATGGACTATCTCAGGG  550

seq1  GAAAGGGAAAGCCTGAGGTCTTCAAGGACCAACAGTGATACAGCAATGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAAAGCCTGAGGTCTTCAAGGACCAACAGTGATACAGCAATGCG  600

seq1  CACGCAGCTACCCTCCCAAGAAGCGATTCTTCAGAATTTTACACTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCTACCCTCCCAAGAAGCGATTCTTCAGAATTTTACACTTTCTC  650

seq1  TGCCCCAAACATTCCATTAGAGCAAAGCAGCAGCCTGGACTCTGGGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAAACATTCCATTAGAGCAAAGCAGCAGCCTGGACTCTGGGTGGC  700

seq1  GATGGCGATCCTTTCCGTGCTTAGCCATTGCTCCTAAATAAACTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGATCCTTTCCGTGCTTAGCCATTGCTCCTAAATAAACTTCTGTC  750

seq1  GAAAAGGGAATGGCTGCTTGAGCCAGTGCAGCAGCTTTTCTGTGTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAATGGCTGCTTGAGCCAGTGCAGCAGCTTTTCTGTGTCTTCC  800

seq1  TCGGGTCTGGTTGCCTTCTGGGAACCCCCAGATTTCCTCCAGAGTGTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTCTGGTTGCCTTCTGGGAACCCCCAGATTTCCTCCAGAGTGTGGG  850

seq1  AAGTCCTGCGGACCTAGGCAGTGCAGCTGAACTCATGAAGTAAACAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCGGACCTAGGCAGTGCAGCTGAACTCATGAAGTAAACAGTTA  900

seq1  AGAGCTGGGGAAGGGG-AGGTAGCA--CCCCTCCCTGAGCAGAG-CCGGT  946
      |||||||||||||||| ||||||||  ||| ||||||||||||| |||||
seq2  AGAGCTGGGGAAGGGGAAGGTAGCATCCCCTTCCCTGAGCAGAGCCCGGT  950

seq1  TGATAATATCTGGGGG-AGGGAAGTCCCTTTCTTCACTTGTAGCTC-TGG  994
      |||| ||||||||||| ||||||||||||||  ||||||||||||| |||
seq2  TGAT-ATATCTGGGGGAAGGGAAGTCCCTTTTCTCACTTGTAGCTCTTGG  999

seq1  TAAGTGG-TCATAACCCACCAC-CTGT  1019
      ||||||| |||| ||||||||| ||||
seq2  TAAGTGGTTCAT-ACCCACCACTCTGT  1025