BAC Information

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BAC

Clone NameB6Ng01-315M21
Chromosome1 (Build37)
Map Location 143,133,473 - 143,134,606
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M21.bB6Ng01-315M21.g
ACCGA106357GA106358
length6821,135
definitionB6Ng01-315M21.b B6Ng01-315M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaaataataacaaagaaaacaataaagaatagcctaaacca
tgatatgcactcactgataagtggatattagcccagaaacttagaatacc
taagatacaatttgcaaaacacataaatctcaagaagtagaaagaccaaa
gtgtgaatactttgttcctccttagaataggggagaaaatacccatgaaa
ggagttacagagacaacatttggagctgagacaataggaagaaccattca
gagactgccccatccagcgatcggtcccataatcagccaccaaacgcaaa
caataatgcatatgctggcaagattttgccaacaggaccctgatatacct
gtctcttctgagactatgtcagtgtctggcaaatacagaagtggatgctc
acagtcatctattagatggaatacagggccccccaatggagaagctagag
aaagtacccaaggagataaaggggtctgcaatcctatgggaggaacaaca
atatgacctaaccagtaccccaagagcccatgtctctagctgcaaatgta
gcagacgatggcctagttggtcatcattgagaggagaggcccttggtctt
gcaaagattctaggccccagtacaggggaatgccagggccaggaagtggg
agtggatggggtggggagcaggacttgggtag
gaattctccagagaagttgacttttctacagtggattttattaattaaaa
gtgcacatataagttgttttctgttcaacactcttccattttccaagatg
gctgactatttttgatagttttgcaaaacaataaaaatacaagcctttca
aacatgcttatcaatactaaacactatacacctcatttacatattgttaa
tgaatgctataggaaaatgcaaattgagatttatgagtatgtttaagtag
catcctctagctagtatatatttaagagtttcatcagggaataatggaat
ctctattttatttattgttattgtcattgttttttagataattacttttt
aaaataccctcataatcaatctctggggttacttccttgtgatttgtatg
ggtaatttctcaaggggatctgagttcctggagtcttgtactgcatcata
ctagttatatatataatttcagtcattcatgggaacatgaatttagcaat
tcctggtatcattcccacattccaccatcattaaggatgaagaaataatc
taattcttctatttgatgtgattaatcttctcaataagtctaccagcatt
aaatatctaaaactcgtgacaagattgatctgacaaggcaaggaaggtag
ttatatattattaggggtaactgcaagagaggagcattgggagtgggaaa
caatttatcatttatacctctcacaacctagccaatgtccaaaatccatc
acttttcctttaaaatacacaagatgatcttaatatatactcaaggtcta
ctcacaaaatgtgatatgatttactcaaggtctatttccaaagtgtcatg
tggtaatgtttttagctaaaagctaaaaatttctgaattgaattcatcct
tctttgatgatgcttaattctctgttcctgtgatatatataccaaataaa
tatttttccactaaaggaatagtgtactgtagagattttgcagattatga
atagtagtcactagcaatttataaaacaaaataaatacggtaataaagaa
tttatacttccaccgggggagtggacttatatggcttgagaatttcttgt
aaacaaagtaccttatccatctatatgtcctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143133473_143134606
seq2: B6Ng01-315M21.g_64_1198

seq1  GAATTCTCCAGAGAAGTTGACTTTTCTACAGTGGATTTTATTAATTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAGAAGTTGACTTTTCTACAGTGGATTTTATTAATTAAAA  50

seq1  GTGCACATATAAGTTGTTTTCTGTTCAACACTCTTCCATTTTCCAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATATAAGTTGTTTTCTGTTCAACACTCTTCCATTTTCCAAGATG  100

seq1  GCTGACTATTTTTGATAGTTTTGCAAAACAATAAAAATACAAGCCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTATTTTTGATAGTTTTGCAAAACAATAAAAATACAAGCCTTTCA  150

seq1  AACATGCTTATCAATACTAAACACTATACACCTCATTTACATATTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTTATCAATACTAAACACTATACACCTCATTTACATATTGTTAA  200

seq1  TGAATGCTATAGGAAAATGCAAATTGAGATTTATGAGTATGTTTAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTATAGGAAAATGCAAATTGAGATTTATGAGTATGTTTAAGTAG  250

seq1  CATCCTCTAGCTAGTATATATTTAAGAGTTTCATCAGGGAATAATGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTAGCTAGTATATATTTAAGAGTTTCATCAGGGAATAATGGAAT  300

seq1  CTCTATTTTATTTATTGTTATTGTCATTGTTTTTTAGATAATTACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTATTTATTGTTATTGTCATTGTTTTTTAGATAATTACTTTTT  350

seq1  AAAATACCCTCATAATCAATCTCTGGGGTTACTTCCTTGTGATTTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCTCATAATCAATCTCTGGGGTTACTTCCTTGTGATTTGTATG  400

seq1  GGTAATTTCTCAAGGGGATCTGAGTTCCTGGAGTCTTGTACTGCATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTCTCAAGGGGATCTGAGTTCCTGGAGTCTTGTACTGCATCATA  450

seq1  CTAGTTATATATATAATTTCAGTCATTCATGGGAACATGAATTTAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTATATATATAATTTCAGTCATTCATGGGAACATGAATTTAGCAAT  500

seq1  TCCTGGTATCATTCCCACATTCCACCATCATTAAGGATGAAGAAATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTATCATTCCCACATTCCACCATCATTAAGGATGAAGAAATAATC  550

seq1  TAATTCTTCTATTTGATGTGATTAATCTTCTCAATAAGTCTACCAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCTATTTGATGTGATTAATCTTCTCAATAAGTCTACCAGCATT  600

seq1  AAATATCTAAAACTCGTGACAAGATTGATCTGACAAGGCAAGGAAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAAACTCGTGACAAGATTGATCTGACAAGGCAAGGAAGGTAG  650

seq1  TTATATATTATTAGGGGTAACTGCAAGAGAGGAGCATTGGGAGTGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTATTAGGGGTAACTGCAAGAGAGGAGCATTGGGAGTGGGAAA  700

seq1  CAATTTATCATTTATACCTCTCACAACCTAGCCAATGTCCAAAATCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCATTTATACCTCTCACAACCTAGCCAATGTCCAAAATCCATC  750

seq1  ACTTTTCCTTTAAAATACACAAGATGATCTTAATATATACTCAAGGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTTTAAAATACACAAGATGATCTTAATATATACTCAAGGTCTA  800

seq1  CTCACAAAATGTGATATGATTTACTCAAGGTCTATTTCCAAAGTGTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAATGTGATATGATTTACTCAAGGTCTATTTCCAAAGTGTCATG  850

seq1  TGGTAATGTTTTTAGCTAAAAGCTAAAAATTTCTGAATTGAATTCATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGTTTTTAGCTAAAAGCTAAAAATTTCTGAATTGAATTCATCCT  900

seq1  TCTTTTGATGATGCTTAATTCTCTGTTCCTGTGATATATATTACCAAATA  950
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TC-TTTGATGATGCTTAATTCTCTGTTCCTGTGATATATA-TACCAAATA  948

seq1  AATATTTTTCCACTAAAGGAATAGGTTGTACTTGTAGAGATTTTGCAGAT  1000
      ||||||||||||||||||||||||  ||||| ||||||||||||||||||
seq2  AATATTTTTCCACTAAAGGAATAG--TGTAC-TGTAGAGATTTTGCAGAT  995

seq1  TAATGGAATTAGTAGTCACTAGCAATTTATAAA--CAAATAAATACAGTA  1048
      | |||  | ||||||||||||||||||||||||   |||||||||| |||
seq2  T-ATG--AATAGTAGTCACTAGCAATTTATAAAACAAAATAAATACGGTA  1042

seq1  ATAAGAATTTTATACT--CACC-GTGGAGT-GAC-TATATGCTTTGAG-A  1092
      ||||  | ||||||||  |||| | ||||| ||| ||||||  ||||| |
seq2  ATAAAGAATTTATACTTCCACCGGGGGAGTGGACTTATATGGCTTGAGAA  1092

seq1  TATCTGTGGAACAAAGTA-CTTAT-CATCTAATATTTCCTGGCT  1134
      | |||    ||||||||| ||||| ||||| |||| ||||||||
seq2  TTTCTTGTAAACAAAGTACCTTATCCATCT-ATATGTCCTGGCT  1135