BAC Information

Click to search

BAC

Clone NameB6Ng01-316C09
Chromosome1 (Build37)
Map Location 116,758,715 - 116,759,846
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C09.bB6Ng01-316C09.g
ACCGA106615GA106616
length1,1391,178
definitionB6Ng01-316C09.b B6Ng01-316C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacagtcagaactgaggccctgaaatctggcatgtgactagca
gttctcagttgctcagcttataccttttataatctgcacagattgcttgg
caaggtatttgctttttatgaggcttttttatcagggactcagtcatctt
tgcaggatttggctagcattgtttaaaggatcctgtttgtgtcccttctg
aggccaattccaagggctgaattatctgttcatcaagttggctggctact
gagcatgtcccaagtagcatatgttggggaggaacatatgaatgttcccc
aggcttcgttgctcctaagaaccagtccctatggcacaaatccatgctga
acactctcaaactagctttaaccaggggatactacatggcgtttttctgg
attcatctacattgaaaacaggtaaagaattcaaacctttctacttcctt
tgtcatgctggccacaaggaagattaggagacaaactcacattcagcaca
tagtgatagcttgattaatcataatattaaattgatttttctagcatctt
ctcagacagagtttaaattcgaaaccattgacaatttaattgcgataagg
catcccagcatattcttgtcttctttcaagattgattcattttctttctt
cgaatttcagaaaacatatgttttactccatggaatattttcaagcaaag
atcacatcatcacccatcaaacatcaatgccattcttatggtaatttttt
caattttattatataatgtttaagattacattacagaaatattatagtaa
tcctgtcacctgatacaattactaaatttattatttaaattacaaaaagt
gatagtttctaattgataattaattgttttgttttgaagaaacaacttat
tacatgtatagcaatacaatttatatgttaaatgagcatatgatagaatg
agttattacagttttaaacaaaaacacaaaagatataaaaaaaacacagg
ttacagaagaccttcattctaaagagttctttttttttttaatttcgctt
ttaaagcaggtcaaggtaaatatataattacttgaatagtcatagtgcct
gcactatgaatcccatggaatttaaaggcaacttagaat

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttttct
tgaaggcactcatagctatgagttccctcttagaatgctttcattgtgtc
ccaaagttgggtacgttgtggctcattttcattaactctaaagtctttat
ttctttctttatccttccttggacccaaggttcattggagaagagtgtgt
ccagcttccaatgtgacgttggcttccgtactcaatccgttactgcgcga
tcaggccctgacgtacagcactagtcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116758715_116759846
seq2: B6Ng01-316C09.b_49_1187 (reverse)

seq1  ATTCTAAGTTGC--TTTAATTCCAT-GGATCATTAGTGCA-GCACTAATT  46
      ||||||||||||  || |||||||| ||||   ||||||| ||||| || 
seq2  ATTCTAAGTTGCCTTTAAATTCCATGGGATTCATAGTGCAGGCACT-ATG  49

seq1  ACTAATCAGTTA---ATATATTTACCTTGACCTGCTTTTAAAAGCG-AAT  92
      |||| |||  ||   |||||||||||||||||||| |||||||||| |||
seq2  ACTATTCAAGTAATTATATATTTACCTTGACCTGC-TTTAAAAGCGAAAT  98

seq1  TAAAAAAAAA---GACTCTTTTAGAATGAAGGTC-TCTGTAACCTGTGTT  138
      ||||||||||    |||| ||||||||||||||| |||||||||||||||
seq2  TAAAAAAAAAAAGAACTC-TTTAGAATGAAGGTCTTCTGTAACCTGTGTT  147

seq1  TTTTTTATATCTTTTTGTTGTTTTTGTTTAAAACTGTAATAACTCATTCT  188
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTTTTTATATCTTTT--GTGTTTTTGTTTAAAACTGTAATAACTCATTCT  195

seq1  ATCATATGCTCATTTAACATATAAATTGTATTGCTATACATGTAATAAGT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGCTCATTTAACATATAAATTGTATTGCTATACATGTAATAAGT  245

seq1  TGTTTCTTCAAAACAAAACAATTAATTATCAATTAGAAACTATCACTTTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCAAAACAAAACAATTAATTATCAATTAGAAACTATCACTTTT  295

seq1  TGTAATTTAAATAATAAATTTAGTAATTGTATCAGGTGACAGGATTACTA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTAAATAATAAATTTAGTAATTGTATCAGGTGACAGGATTACTA  345

seq1  TAATATTTCTGTAATGTAATCTTAAACATTATATAATAAAATTGAAAAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTGTAATGTAATCTTAAACATTATATAATAAAATTGAAAAAA  395

seq1  TTACCATAAGAATGGCATTGATGTTTGATGGGTGATGATGTGATCTTTGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATAAGAATGGCATTGATGTTTGATGGGTGATGATGTGATCTTTGC  445

seq1  TTGAAAATATTCCATGGAGTAAAACATATGTTTTCTGAAATTCGAAGAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATTCCATGGAGTAAAACATATGTTTTCTGAAATTCGAAGAAA  495

seq1  GAAAATGAATCAATCTTGAAAGAAGACAAGAATATGCTGGGATGCCTTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAATCAATCTTGAAAGAAGACAAGAATATGCTGGGATGCCTTAT  545

seq1  CGCAATTAAATTGTCAATGGTTTCGAATTTAAACTCTGTCTGAGAAGATG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATTAAATTGTCAATGGTTTCGAATTTAAACTCTGTCTGAGAAGATG  595

seq1  CTAGAAAAATCAATTTAATATTATGATTAATCAAGCTATCACTATGTGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAATCAATTTAATATTATGATTAATCAAGCTATCACTATGTGCT  645

seq1  GAATGTGAGTTTGTCTCCTAATCTTCCTTGTGGCCAGCATGACAAAGGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGTTTGTCTCCTAATCTTCCTTGTGGCCAGCATGACAAAGGAA  695

seq1  GTAGAAAGGTTTGAATTCTTTACCTGTTTTCAATGTAGATGAATCCAGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGGTTTGAATTCTTTACCTGTTTTCAATGTAGATGAATCCAGAA  745

seq1  AAACGCCATGTAGTATCCCCTGGTTAAAGCTAGTTTGAGAGTGTTCAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCATGTAGTATCCCCTGGTTAAAGCTAGTTTGAGAGTGTTCAGCA  795

seq1  TGGATTTGTGCCATAGGGACTGGTTCTTAGGAGCAACGAAGCCTGGGGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGTGCCATAGGGACTGGTTCTTAGGAGCAACGAAGCCTGGGGAA  845

seq1  CATTCATATGTTCCTCCCCAACATATGCTACTTGGGACATGCTCAGTAGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATGTTCCTCCCCAACATATGCTACTTGGGACATGCTCAGTAGC  895

seq1  CAGCCAACTTGATGAACAGATAATTCAGCCCTTGGAATTGGCCTCAGAAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACTTGATGAACAGATAATTCAGCCCTTGGAATTGGCCTCAGAAG  945

seq1  GGACACAAACAGGATCCTTTAAACAATGCTAGCCAAATCCTGCAAAGATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAACAGGATCCTTTAAACAATGCTAGCCAAATCCTGCAAAGATG  995

seq1  ACTGAGTCCCTGATAAAAAAGCCTCATAAAAAGCAAATACCTTGCCAAGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCCCTGATAAAAAAGCCTCATAAAAAGCAAATACCTTGCCAAGC  1045

seq1  AATCTGTGCAGATTATAAAAGGTATAAGCTGAGCAACTGAGAACTGCTAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGCAGATTATAAAAGGTATAAGCTGAGCAACTGAGAACTGCTAG  1095

seq1  TCACATGCCAGATTTCAGGGCCTCAGTTCTGACTGTGAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCAGATTTCAGGGCCTCAGTTCTGACTGTGAGAATTC  1139


| Home | SequenceCutter | Blast | Download |