BAC Information

Click to search

BAC

Clone NameB6Ng01-316C10
Chromosome1 (Build37)
Map Location 138,424,383 - 138,575,741
singlet/doubletdoublet
Overlap geneKif14, Zfp281
Upstream geneNav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59
Downstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C10.bB6Ng01-316C10.g
ACCGA106617GA106618
length1,077987
definitionB6Ng01-316C10.b B6Ng01-316C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,424,383 - 138,425,436)(138,574,796 - 138,575,741)
sequence
gaattctataagcagatgagttttaaacaaagaatattgtttaaaaatgt
tgaaatattggcatcagaatgaaattaaggtatcaggaccaagtgagtga
ctatggtcctagtttctcatcttaaattttttttctttttttttattggt
tattttatttatttgcatttcaaatgttatcccccttcccaattttccct
ccacaagcctcctaacccctcctcctcccccctgcttctatgagggtgct
cccccacccacccacccacccactcccacttcaccaccctggtgctgtct
agctggttcattggtctgtttgtagatagttattttctcctgaatggaaa
tctaaacagtttgttactttgggcctgtgcattctctcccccaaatatag
catatggattaagtttatgtgaaattattagcacaggtttaaccaaggta
gctgactaaaactacagctctttgtccaagaatcaactgtttgccatctt
caataatatatatgtgtgatttgtttcttttcaaaatgtacataaaaaga
taatataattgcatattaataatatgaccagatagcatcgtagcttactg
tgttttctgtgttccacagtggttgcttcatttataaaatttaaaagtag
tagtgaaatgtaaccagaaccacttgggaggtcagaggctgccccctttt
gatagtgcttgtttttgctaaagggtacttagtttacatgttgtttgatg
gagattaaagatccttttttatatttcatagccttaagaacccttcatct
acaatcaagtctatagataaatatcctactttagggtttgactttaggaa
attgtttattttttaccttcaagaatatgtgtaattttgaaagatattta
gtatctttagcctggtgttgacccttgagctaggttctgtaaaggaactt
ccccgtgagtggcctgcttttggcctgtagctgctgccttgtacattcag
ttggagctccgtggccctggcttgaaagatacctgatgtttcttcatatg
ggggaagagaataaggagagacagcac
gaattcctcgcctcaagagcactcgctgatcctgcctcttccagagcttt
gagcactggtgtaagtgcctcagggttctgctctttgacctctctcttat
cgagcagcaagcactcccttcagggtcacagtctcaagctttaaatattt
attcactggtggtttctaacatgtgtcattacattagcactcctgtctcc
ttgtactggtctccatggatactgaggggatacaggtgggcaagagctct
ggctgttcgtgtcaaaccaaatgcttaaagccagaactagagtccattct
ccacttgttctttcctctcaattctgcaggtccagaatctgccctagttg
tcctgagcccaagtcatcacccttttttctgggttttttcaatatctcat
tttcttgtttgcttttggtggccgtgtgaggagggaatggtggttcagtc
tagattgttctaagtagggactcagggtcaagaggtgacccagcggttaa
gaacactggctgcttttccagaggacctggattctatttctagcatccat
atggtggctcacaaccatacaactgtctgtgactcttgttccagaggatc
agataccctcttctaacctccataggaactaagtatacacagacatacat
gcagaaaaattatctacaaagttaaacaagactgggtgtgttagtggtaa
cgcacacctttgatcccagcactctggacagaggcagatggatctctgag
tttgagaccagcctggtctacagagtgagtttcaaggcagccagggctag
ctacacagagaaaccctgtcaatgggaaaaaaataaaataataaaggggt
ttcactgggtagcccaggagtaggccttgatttcacaacaatgcccctga
ctctcaggtttagatattaaaacaggcatcagccacattgcccagggttt
ctcacagtattcagagcagtcagacagagagaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138424383_138425436
seq2: B6Ng01-316C10.b_47_1123

seq1  GAATTCTATAAGCAGATGAGTTTTAAACAAAGAATATTGTTTAAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAGCAGATGAGTTTTAAACAAAGAATATTGTTTAAAAATGT  50

seq1  TGAAATATTGGCATCAGAATGAAATTAAGGTATCAGGACCAAGTGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTGGCATCAGAATGAAATTAAGGTATCAGGACCAAGTGAGTGA  100

seq1  CTATGGTCCTAGTTTCTCATCTTAAATTTTTTTTCTTTTTTTTTATTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTCCTAGTTTCTCATCTTAAATTTTTTTTCTTTTTTTTTATTGGT  150

seq1  TATTTTATTTATTTGCATTTCAAATGTTATCCCCCTTCCCAATTTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTATTTGCATTTCAAATGTTATCCCCCTTCCCAATTTTCCCT  200

seq1  CCACAAGCCTCCTAACCCCTCCTCCTCCCCCCTGCTTCTATGAGGGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCCTCCTAACCCCTCCTCCTCCCCCCTGCTTCTATGAGGGTGCT  250

seq1  CCCCCACCCACCCACCCACCCACTCCCACTTCACCACCCTGGTGCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCACCCACCCACCCACTCCCACTTCACCACCCTGGTGCTGTCT  300

seq1  AGCTGGTTCATTGGTCTGTTTGTAGATAGTTATTTTCTCCTGAATGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTCATTGGTCTGTTTGTAGATAGTTATTTTCTCCTGAATGGAAA  350

seq1  TCTAAACAGTTTGTTACTTTGGGCCTGTGCATTCTCTCCCCCAAATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGTTTGTTACTTTGGGCCTGTGCATTCTCTCCCCCAAATATAG  400

seq1  CATATGGATTAAGTTTATGTGAAATTATTAGCACAGGTTTAACCAAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATTAAGTTTATGTGAAATTATTAGCACAGGTTTAACCAAGGTA  450

seq1  GCTGACTAAAACTACAGCTCTTTGTCCAAGAATCAACTGTTTGCCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTAAAACTACAGCTCTTTGTCCAAGAATCAACTGTTTGCCATCTT  500

seq1  CAATAATATATATGTGTGATTTGTTTCTTTTCAAAATGTACATAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATATATGTGTGATTTGTTTCTTTTCAAAATGTACATAAAAAGA  550

seq1  TAATATAATTGCATATTAATAATATGACCAGATAGCATCGTAGCTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATTGCATATTAATAATATGACCAGATAGCATCGTAGCTTACTG  600

seq1  TGTTTTCTGTGTTCCACAGTGGTTGCTTCATTTATAAAATTTAAAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTGTTCCACAGTGGTTGCTTCATTTATAAAATTTAAAAGTAG  650

seq1  TAGTGAAATGTAACCAGAACCACTTGGGAGGTCAGAGGCTGCCCCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATGTAACCAGAACCACTTGGGAGGTCAGAGGCTGCCCCCTTTT  700

seq1  GATAGTGCTTG-TTTTGCTAAAGGGTACTTAGTTTACATGTTGTTTGATG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCTTGTTTTTGCTAAAGGGTACTTAGTTTACATGTTGTTTGATG  750

seq1  GAGATTAAAGATCC-TTTTTATATTTCATAGCCTTAAGAACCCTTCATCT  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAGATCCTTTTTTATATTTCATAGCCTTAAGAACCCTTCATCT  800

seq1  ACAATCAAGTCTAAAGAT-AATATCCTACTTTAGGGTTTGACTTAAGGAA  847
      ||||||||||||| |||| ||||||||||||||||||||||||| |||||
seq2  ACAATCAAGTCTATAGATAAATATCCTACTTTAGGGTTTGACTTTAGGAA  850

seq1  ATTGTTTATTTTTTACC-TCAAGAATATGTGTAA-TTTGAAAGATATTTA  895
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ATTGTTTATTTTTTACCTTCAAGAATATGTGTAATTTTGAAAGATATTTA  900

seq1  GTATC-TTAGCCTG--GGTGACC--TGAGC-AGGTTCTGT-AAGGGACTT  938
      ||||| ||||||||  | |||||  ||||| ||||||||| |||| ||||
seq2  GTATCTTTAGCCTGGTGTTGACCCTTGAGCTAGGTTCTGTAAAGGAACTT  950

seq1  -CCCGTGAGTGGCCTGCTTTTGG-CTGTAGCTGCTGCC-TGTACATTCAG  985
       |||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CCCCGTGAGTGGCCTGCTTTTGGCCTGTAGCTGCTGCCTTGTACATTCAG  1000

seq1  -TGGAGCTCGGTGACACTGGCTTG-AAGATACCTGTTGTTTTCTC-TATG  1032
       |||||||| ||| | |||||||| |||||||||| |||||  || ||||
seq2  TTGGAGCTCCGTGGCCCTGGCTTGAAAGATACCTGATGTTTCTTCATATG  1050

seq1  GGG--AGAGA--TAGGAGAG-CAGCAC  1054
      |||  |||||   ||||||| ||||||
seq2  GGGGAAGAGAATAAGGAGAGACAGCAC  1077

seq1: chr1_138574796_138575741
seq2: B6Ng01-316C10.g_68_1013 (reverse)

seq1  CCTGGGCATGGTGGCTGATGCCTGTTTTAATATCTAAACCTGAGAGTCAG  50
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAATGTGGCTGATGCCTGTTTTAATATCTAAACCTGAGAGTCAG  50

seq1  GGGCATTGTTGTGAAATCAAGGCCTACTCCTGGGCTACCCAGTGAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGTTGTGAAATCAAGGCCTACTCCTGGGCTACCCAGTGAAACCC  100

seq1  CTTTATTATTTTATTTTTTTCCCATTGACAGGGTTTCTCTGTGTAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATTTTATTTTTTTCCCATTGACAGGGTTTCTCTGTGTAGCTAG  150

seq1  CCCTGGCTGCCTTGAAACTCACTCTGTAGACCAGGCTGGTCTCAAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGCCTTGAAACTCACTCTGTAGACCAGGCTGGTCTCAAACTCA  200

seq1  GAGATCCATCTGCCTCTGTCCAGAGTGCTGGGATCAAAGGTGTGCGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCATCTGCCTCTGTCCAGAGTGCTGGGATCAAAGGTGTGCGTTAC  250

seq1  CACTAACACACCCAGTCTTGTTTAACTTTGTAGATAATTTTTCTGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACACACCCAGTCTTGTTTAACTTTGTAGATAATTTTTCTGCATGT  300

seq1  ATGTCTGTGTATACTTAGTTCCTATGGAGGTTAGAAGAGGGTATCTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGTATACTTAGTTCCTATGGAGGTTAGAAGAGGGTATCTGATC  350

seq1  CTCTGGAACAAGAGTCACAGACAGTTGTATGGTTGTGAGCCACCATATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAACAAGAGTCACAGACAGTTGTATGGTTGTGAGCCACCATATGG  400

seq1  ATGCTAGAAATAGAATCCAGGTCCTCTGGAAAAGCAGCCAGTGTTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGAAATAGAATCCAGGTCCTCTGGAAAAGCAGCCAGTGTTCTTAA  450

seq1  CCGCTGGGTCACCTCTTGACCCTGAGTCCCTACTTAGAACAATCTAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGGTCACCTCTTGACCCTGAGTCCCTACTTAGAACAATCTAGACT  500

seq1  GAACCACCATTCCCTCCTCACACGGCCACCAAAAGCAAACAAGAAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACCATTCCCTCCTCACACGGCCACCAAAAGCAAACAAGAAAATGA  550

seq1  GATATTGAAAAAACCCAGAAAAAAGGGTGATGACTTGGGCTCAGGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAAAAAACCCAGAAAAAAGGGTGATGACTTGGGCTCAGGACAAC  600

seq1  TAGGGCAGATTCTGGACCTGCAGAATTGAGAGGAAAGAACAAGTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGATTCTGGACCTGCAGAATTGAGAGGAAAGAACAAGTGGAGAA  650

seq1  TGGACTCTAGTTCTGGCTTTAAGCATTTGGTTTGACACGAACAGCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTAGTTCTGGCTTTAAGCATTTGGTTTGACACGAACAGCCAGAG  700

seq1  CTCTTGCCCACCTGTATCCCCTCAGTATCCATGGAGACCAGTACAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCACCTGTATCCCCTCAGTATCCATGGAGACCAGTACAAGGAG  750

seq1  ACAGGAGTGCTAATGTAATGACACATGTTAGAAACCACCAGTGAATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGCTAATGTAATGACACATGTTAGAAACCACCAGTGAATAAAT  800

seq1  ATTTAAAGCTTGAGACTGTGACCCTGAAGGGAGTGCTTGCTGCTCGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGCTTGAGACTGTGACCCTGAAGGGAGTGCTTGCTGCTCGATAA  850

seq1  GAGAGAGGTCAAAGAGCAGAACCCTGAGGCACTTACACCAGTGCTCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGTCAAAGAGCAGAACCCTGAGGCACTTACACCAGTGCTCAAAG  900

seq1  CTCTGGAAGAGGCAGGATCAGCGAGTGCTCTTGAGGCGAGGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGAGGCAGGATCAGCGAGTGCTCTTGAGGCGAGGAATTC  946