BAC Information

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BAC

Clone NameB6Ng01-316J22
Chromosome1 (Build37)
Map Location 191,474,119 - 191,582,473
singlet/doubletdoublet
Overlap geneCenpf, Ptpn14
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307
Downstream geneLOC100042438, Smyd2, Prox1, LOC100039394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316J22.bB6Ng01-316J22.g
ACCGA106970GA106971
length1,0511,156
definitionB6Ng01-316J22.b B6Ng01-316J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,581,433 - 191,582,473)(191,474,119 - 191,475,263)
sequence
gaattctcctccaaggtataaccctttgatgggtgtttggtaaaatgatt
tgaaggctggccttcaaatacgttgcaccaagcaccctactaactaccaa
tacctgctctaaatcctttgcatgtgttacaataatcctataaaataagt
gctgctgctcccagccccggcttaccaacagggaaactgaggtagagagg
gtaaggtcaggacagttcattgtggtggatgtgggattctgatgcagaag
ttgggtggcacagggagagagttcagctggctgctcagatgtttgtggga
cccgtacagtatactaacagagtctgattacacaaatttggagtcccctc
aaaagaactttacatttaattttagtgggggaactagtgtttttgagcta
agggcgtcgtgtagcataggctggccttgaactcttgcctccatctccca
agtgctaagattacagctctgagcacgttctcggtcgtcacgatattggg
ggtggaaacctcagcctcacaaaagctggccaggcaccctaataactgag
ctgcaccctaacccgtggagccatgacgataatgccttgggggtggaggg
cagactctgtccccaaacaaatctgaaaatgagactatatgcatcaagtc
ctctctccccaggtcaagccttcaccccacaattcagttctacaacgcca
cataactgagggctccgaggaccttgccataatgcctccctcagaatcag
aacaaaactgattagaaccctgaatgagacacaggatctgagagctctca
gcctggcctcgccccaaatcagtactagaagtatatacgcaggcagtttg
ctaagacacctggactcccaagcctgtctggaccccagtctctccagtta
acaagcgaaccttgctctctgtttacagcggtgactaaggaccggagcaa
ttttctcaccttaacattcccaggctggtgcacctcaaggaccccctggc
tagtcgagcaccttcctatgggatacctccctcttccagggggttagatg
a

gaattccaggacagccagggctacacagagaaaacaaacaaacaaacaaa
acaaaaccactaccaaaatggcaaactcttgaaggagatccattagcaaa
gagtactatcttcccccatggtaataattctattccgaaatgtaggcttc
actctgaatcctacagtcttaactatagctaagtcttacacaaggttaag
accacagttcagaaattacaaagcactactaaaaactactaaactacttc
taaaacttagcgcacaactgagcactgacgcgattttaagcgtgcacaca
gagcacgccagttagcacccacctgctctctgctgctgtgcagcttcaag
ctgggagagctccttctgcagcatctccttttctccttccagctgtctac
aggatttgagcatcaactttattttcccctgagcacgctgaagttccttc
tcaagttgattcacagatttcaggtgcgctgcctacaaaacagacgtaag
ttcatttaaaattgttgatttcattttataagtatatagaaatatatata
tatattagacaactaaaacatattaaagcagcagtagtacagttatgttt
aaaatataacataaatgtataaaataaggcccctctctactcagttccct
aagtctccccgacaaccagtgtggatttggaaactgttttcagcctgaca
cggatcatggttcctaaagtaatatctcatggctcctaggctcacagaag
catcggatggtgaagatcactacagacctgagcatatcagcttgggttcc
aaaagctgaaacaactgtgacacatcacagaatgtcttacaaagacaacc
atagcagccatacccagctagcagaggcaaaggaatctgtctgtcacggg
aaacttactttggtgttctgcagttcttcacgcagcacttccacttcttc
tgttagcctgttttttcttcttttattgtagtcttcgctcagctgtgttg
ttttctgtagcatattctcgcagctccctcttgcagctcctgccttcttc
ccagaatattgtgctttaacctggaatgtatctcattagcacttgctctg
ggttggtctggctttgcgtgataaacccactgttatggccacacagttcc
ttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191581433_191582473
seq2: B6Ng01-316J22.b_50_1100 (reverse)

seq1  TCATCTAA-CCCCTGGAAGAGGTGTGT-TCCCAT-GGGAGGTGCTCGACT  47
      |||||||| |||||||||||||   || |||||| || ||||||||||||
seq2  TCATCTAACCCCCTGGAAGAGGGAGGTATCCCATAGGAAGGTGCTCGACT  50

seq1  AGCCA-GGGGTCCTTGAGGTGCACCAGCCTGGG-ATGTTAGGGTGAG-AA  94
      ||||| ||||||||||||||||||||||||||| |||||| |||||| ||
seq2  AGCCAGGGGGTCCTTGAGGTGCACCAGCCTGGGAATGTTAAGGTGAGAAA  100

seq1  ATTGCTCC-GTCCTTAGTCACCGCTGTAAAC-GAGGGCA--GGTCGCTTG  140
      |||||||| |||||||||||||||||||||| ||| |||  | |||||||
seq2  ATTGCTCCGGTCCTTAGTCACCGCTGTAAACAGAGAGCAAGGTTCGCTTG  150

seq1  TTAACTGGAGAGACTGGGGTCCAGACAGGCTTGGG-GTCCAGGTGTCTTA  189
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAACTGGAGAGACTGGGGTCCAGACAGGCTTGGGAGTCCAGGTGTCTTA  200

seq1  GCAAACTGCCTGCGTATATACTTCTAGTACCTGATTT-GGGCGAGGCCAG  238
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  GCAAACTGCCTGCGTATATACTTCTAGTA-CTGATTTGGGGCGAGGCCAG  249

seq1  GCTGAGAGCTCTCAGATCCTGTGTCTCATTCAGGGTTCTAATCAGTTTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGCTCTCAGATCCTGTGTCTCATTCAGGGTTCTAATCAGTTTTG  299

seq1  TTCTGATTCTGAGGGAGGCATTTATGGCAAGGTCCTCGGAGCCCTCAGTT  338
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTGATTCTGAGGGAGGCA-TTATGGCAAGGTCCTCGGAGCCCTCAGTT  348

seq1  ATGTGGCGTTGTAGAACTGAATTGTGGGGTGAAGGCTTGACCTGGGGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCGTTGTAGAACTGAATTGTGGGGTGAAGGCTTGACCTGGGGAGA  398

seq1  GAGGACTTGATGCATATAGTCTCATTTTCAGATTTGTTTGGGGACAGAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTGATGCATATAGTCTCATTTTCAGATTTGTTTGGGGACAGAGT  448

seq1  CTGCCCTCCACCCCCAAGGCATTATCGTCATGGCTCCACGGGTTAGGGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCACCCCCAAGGCATTATCGTCATGGCTCCACGGGTTAGGGTG  498

seq1  CAGCTCAGTTATTAGGGTGCCTGGCCAGCTTTTGTGAGGCTGAGGTTTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTTATTAGGGTGCCTGGCCAGCTTTTGTGAGGCTGAGGTTTCC  548

seq1  ACCCCCAATATCGTGACGACCGAGAACGTGCTCAGAGCTGTAATCTTAGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAATATCGTGACGACCGAGAACGTGCTCAGAGCTGTAATCTTAGC  598

seq1  ACTTGGGAGATGGAGGCAAGAGTTCAAGGCCAGCCTATGCTACACGACGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGATGGAGGCAAGAGTTCAAGGCCAGCCTATGCTACACGACGC  648

seq1  CCTTAGCTCAAAAACACTAGTTCCCCCACTAAAATTAAATGTAAAGTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCAAAAACACTAGTTCCCCCACTAAAATTAAATGTAAAGTTCT  698

seq1  TTTGAGGGGACTCCAAATTTGTGTAATCAGACTCTGTTAGTATACTGTAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGGACTCCAAATTTGTGTAATCAGACTCTGTTAGTATACTGTAC  748

seq1  GGGTCCCACAAACATCTGAGCAGCCAGCTGAACTCTCTCCCTGTGCCACC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCACAAACATCTGAGCAGCCAGCTGAACTCTCTCCCTGTGCCACC  798

seq1  CAACTTCTGCATCAGAATCCCACATCCACCACAATGAACTGTCCTGACCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGCATCAGAATCCCACATCCACCACAATGAACTGTCCTGACCT  848

seq1  TACCCTCTCTACCTCAGTTTCCCTGTTGGTAAGCCGGGGCTGGGAGCAGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTCTACCTCAGTTTCCCTGTTGGTAAGCCGGGGCTGGGAGCAGC  898

seq1  AGCACTTATTTTATAGGATTATTGTAACACATGCAAAGGATTTAGAGCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATTTTATAGGATTATTGTAACACATGCAAAGGATTTAGAGCAG  948

seq1  GTATTGGTAGTTAGTAGGGTGCTTGGTGCAACGTATTTGAAGGCCAGCCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTAGTTAGTAGGGTGCTTGGTGCAACGTATTTGAAGGCCAGCCT  998

seq1  TCAAATCATTTTACCAAACACCCATCAAAGGGTTATACCTTGGAGGAGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCATTTTACCAAACACCCATCAAAGGGTTATACCTTGGAGGAGAA  1048

seq1  TTC  1041
      |||
seq2  TTC  1051


seq1: chr1_191474119_191475263
seq2: B6Ng01-316J22.g_67_1222

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAAACAAACAAACAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAAACAAACAAACAAACAAA  50

seq1  ACAAAACCACTACCAAAATGGCAAACTCTTGAAGGAGATCCATTAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCACTACCAAAATGGCAAACTCTTGAAGGAGATCCATTAGCAAA  100

seq1  GAGTACTATCTTCCCCCATGGTAATAATTCTATTCCGAAATGTAGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTATCTTCCCCCATGGTAATAATTCTATTCCGAAATGTAGGCTTC  150

seq1  ACTCTGAATCCTACAGTCTTAACTATAGCTAAGTCTTACACAAGGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAATCCTACAGTCTTAACTATAGCTAAGTCTTACACAAGGTTAAG  200

seq1  ACCACAGTTCAGAAATTACAAAGCACTACTAAAAACTACTAAACTACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTTCAGAAATTACAAAGCACTACTAAAAACTACTAAACTACTTC  250

seq1  TAAAACTTAGCGCACAACTGAGCACTGACGCGATTTTAAGCGTGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGCGCACAACTGAGCACTGACGCGATTTTAAGCGTGCACACA  300

seq1  GAGCACGCCAGTTAGCACCCACCTGCTCTCTGCTGCTGTGCAGCTTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGCCAGTTAGCACCCACCTGCTCTCTGCTGCTGTGCAGCTTCAAG  350

seq1  CTGGGAGAGCTCCTTCTGCAGCATCTCCTTTTCTCCTTCCAGCTGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGCTCCTTCTGCAGCATCTCCTTTTCTCCTTCCAGCTGTCTAC  400

seq1  AGGATTTGAGCATCAACTTTATTTTCCCCTGAGCACGCTGAAGTTCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGAGCATCAACTTTATTTTCCCCTGAGCACGCTGAAGTTCCTTC  450

seq1  TCAAGTTGATTCACAGATTTCAGGTGCGCTGCCTACAAAACAGACGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGATTCACAGATTTCAGGTGCGCTGCCTACAAAACAGACGTAAG  500

seq1  TTCATTTAAAATTGTTGATTTCATTTTATAAGTATATAGAAATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAATTGTTGATTTCATTTTATAAGTATATAGAAATATATATA  550

seq1  TATATTAGACAACTAAAACATATTAAAGCAGCAGTAGTACAGTTATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGACAACTAAAACATATTAAAGCAGCAGTAGTACAGTTATGTTT  600

seq1  AAAATATAACATAAATGTATAAAATAAGGCCCCTCTCTACTCAGTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACATAAATGTATAAAATAAGGCCCCTCTCTACTCAGTTCCCT  650

seq1  AAGTCTCCCCGACAACCAGTGTGGATTTGGAAACTGTTTTCAGCCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCCCGACAACCAGTGTGGATTTGGAAACTGTTTTCAGCCTGACA  700

seq1  CGGATCATGGTTCCTAAAGTAATATCTCATGGCTCCTAGGCTCACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCATGGTTCCTAAAGTAATATCTCATGGCTCCTAGGCTCACAGAAG  750

seq1  CATCGGATGGTGAAGATCACTACAGACCTGAGCATATCAGCTTGGGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGATGGTGAAGATCACTACAGACCTGAGCATATCAGCTTGGGTTCC  800

seq1  AAAAGCTGAAACAACTGTGACACATCACAGAATGTCTTACAAAGACAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGAAACAACTGTGACACATCACAGAATGTCTTACAAAGACAACC  850

seq1  ATAGCAGCCATACCCAGCTAGCAGAGGCAAAGGAATCTGTCTGTCACGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCCATACCCAGCTAGCAGAGGCAAAGGAATCTGTCTGTCACGGG  900

seq1  AAACTTACTTTGGTGTTCTGCAGTTCTTCACGCAGCACTTCCACTTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTTTGGTGTTCTGCAGTTCTTCACGCAGCACTTCCACTTCTTC  950

seq1  TGTTAGCCTG-TTTTTCT--CTTTATTGTAGTCTTCGCTCAGCTGTGTTG  997
      |||||||||| |||||||   |||||||||||||||||||||||||||||
seq2  TGTTAGCCTGTTTTTTCTTCTTTTATTGTAGTCTTCGCTCAGCTGTGTTG  1000

seq1  TTTTCTGTAGCATA-TCTCGCAGCTCCCTC-TGCAGCT-CTGCTTCCTTC  1044
      |||||||||||||| ||||||||||||||| ||||||| |||| | ||||
seq2  TTTTCTGTAGCATATTCTCGCAGCTCCCTCTTGCAGCTCCTGCCTTCTTC  1050

seq1  CCAG-ATATTGTGC--TAACCTGGAATGTAATCTTCATTAGCACTTGCTC  1091
      |||| |||||||||  ||||||||||||| ||| ||||||||||||||||
seq2  CCAGAATATTGTGCTTTAACCTGGAATGT-ATC-TCATTAGCACTTGCTC  1098

seq1  TGGG-TGGTCT-GCTATGCGTGAATTAACCACTGTTATGGCACACACAGT  1139
      |||| |||||| ||| |||||||   | ||||||||||||| ||||||||
seq2  TGGGTTGGTCTGGCTTTGCGTGATAAACCCACTGTTATGGC-CACACAGT  1147

seq1  ---TTCTTT  1145
         ||||||
seq2  TCCTTCTTT  1156


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