BAC Information

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BAC

Clone NameB6Ng01-316K14
Chromosome1 (Build37)
Map Location 127,647,734 - 127,770,305
singlet/doubletdoublet
Overlap geneLypd1
Upstream geneActr3, Slc35f5
Downstream geneE030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316K14.bB6Ng01-316K14.g
ACCGA107002GA107003
length1,1411,187
definitionB6Ng01-316K14.b B6Ng01-316K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,769,184 - 127,770,305)(127,647,734 - 127,648,911)
sequence
gaattcttatcccctgaaccatctcccagatcaggagataagagcccttt
ctgtgggaggagttaaggaaaggttatgcactcagatttgggcacaaaga
gatagctggactgcagatcacatatgctaaccccacttctctgggcctgt
gttatagggatcatgtaccggaagtcgtgtgcatcgtcagcagcctgtct
cattgcttcagctgggtaccagtccttctgttcccctgggaaactgaact
ccgtgtgcatcagctgctgcaacacccctctttgcaatgggccgaggccc
aagaagagaggcagctctgcctcggccatcaggccagggcttctcaccac
tctcctgttcttccacttagccctctgcttggcacactgctgaagctaaa
ggagatgccaacccctgctgcctcacctgtctggcccttcgtctctcacc
ttcccgagtctcttctgggtgtccttttattctgggtagacaagggagtc
tttttgttccctcctttcaagtaacgcaagattgccgtgcacaaatactt
ttgtaagctctgaaccaattcattctgaatttctgtgtgtagttgaagaa
aaaagcatggagcagaaagtccagaccctcccatcccaatctggttaacc
accgccaaggctagcctggaagaaccagcccttagaagtcattgagatac
gcatctgcctttcccaaagccttgagcttccattctgtcccagtaggagt
cacagtctattcagagactgctgctgcgtgaaggtaactttgcttttgcg
ggaggggagagccagtttcggctcaaggcttctgaacttgccattcatac
ttcctgctcctgtaaactattttctggggtggacccagctggtttggtct
ctgagccagtctgtggtgactcagactcaaggggctggggcttagccttc
tccaggcttgggcctcagtctgaaaagtgcttaagaaaaacccttgttag
ttctcctggagggaagaagtttacttgcgcccgggaggctaagggagatg
aggggctgccgggcctgagcttgggtgcctgtcccttgttgtagatgaaa
gccgggcacgcctgccgattctctggttggccatgcctgca

gaattcataactggggcaccagctcaagtgtgacccagaaatgaaagcta
ctctaatttgcgaaccttgaaccacactgagctccaaattaatctttttc
tttttccactgtgctgagcactgaaccaaggattttgaaaacagcaacac
ctagtaagccagcttgaaccagaacgaagcctattcattttctaaaagta
ttgagctggaacaatacagaaatgttaaagtatctttcaaactaaacctg
gattgagctgatcattcacaagtgcctagcaaacaatagaacaagaattc
tttctggagagacaattctgtgcctctcacatgcctgccttcctcactgc
taaattagaccaccaatgtcctttttttctacattgaaaccctgagttga
atccttaggcccgacttttcattgggaagtatcctttgtgcatttatttc
acatttccctttttgttttgtgggaaagtttatgtgcatataaactgtgt
gtgcacacgtgcacacatatacacatatgcatatgtgcagaaaatggcct
cgggtacgggtataattcttcaggcaccgctcatcttttgttgagacagg
gttgctcactggtctgaagattgccaagtagtgtagactggcttcccagc
aaatctccaggatctgtgtggctctgccccctctagcacagtgatcgcaa
gcacatagcatatgcctgggcttttgatgctggtactggggaatcaaagc
aagatctccacgttttaatgacaagtgccttaccaactgagccatctctc
aggctctgtagctatctttcttttttaaaaaattaattaaaaaaaaaaca
gaggaggggcatgcacatgggcattcatgtgtattactatggtgtgacta
tggaagtctgtttcttcaggagtccatttccccctttctacaatgtagtt
ttagagatcaaactttgggttgtcaggtttggtggtcagtgtcaatttac
ccccctaatattatttttgccttaccccacctccttcacctggaaacttg
gaaattgcatatggtttctggcaatctaaccctggtctctggatagccag
tggcttctaaaccactcagtcattctctcagaccttcctcactctgatgc
ttggatacgtttgtactaccttaaccaaacctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127769184_127770305
seq2: B6Ng01-316K14.b_47_1187 (reverse)

seq1  TGCA-GCAT-GCCAACCAAGAGAAACGCCA-GCGTGCCCG--CTTCATCT  45
      |||| |||| ||||||| |||||| || || |||||||||   |||||||
seq2  TGCAGGCATGGCCAACC-AGAGAATCGGCAGGCGTGCCCGGCTTTCATCT  49

seq1  CCACCAA-GGACA-GCACC--AGCTCAG--CCCGCAGCCCCCTCATCTTC  89
       || ||| ||||| |||||  |||||||  || |||| |||||||||| |
seq2  ACAACAAGGGACAGGCACCCAAGCTCAGGCCCGGCAG-CCCCTCATCTCC  98

seq1  C-TAGCCTCCC-GGCGC-AGTAA--CTCTT-CCTCCAGGAGAACTAACAA  133
      | ||||||||| ||||| |||||   |||| |||||||||||||||||||
seq2  CTTAGCCTCCCGGGCGCAAGTAAACTTCTTCCCTCCAGGAGAACTAACAA  148

seq1  GG--TTTTCTTAAGCACTTTTCAGACTGAGG-CCAAGCCTGGAG-AGGCT  179
      ||  ||||||||||||||||||||||||||| |||||||||||| |||||
seq2  GGGTTTTTCTTAAGCACTTTTCAGACTGAGGCCCAAGCCTGGAGAAGGCT  198

seq1  AAGCCCCAG-CCCTTGAGTCCTGAGTCACCACAGACTGGCTCAGAGACCA  228
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  AAGCCCCAGCCCCTTGAGT-CTGAGTCACCACAGACTGGCTCAGAGACCA  247

seq1  AACCAGCTGGGTCCACCCCAGAAAATAGTTTACAGGAGCAGGAAGTATGA  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTGGGTCCACCCCAGAAAATAGTTTACAGGAGCAGGAAGTATGA  297

seq1  ATGGCAAGTTCAGAAGCCTTGAGCCGAAACTGGCTCTCCCCTCCCGCAAA  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGTTCAGAAGCCTTGAGCCGAAACTGGCTCTCCCCTCCCGCAAA  347

seq1  AGCAAAGTTACCTTCACGCAGCAGCAGTCTCTGAATAGACTGTGACTCCT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTACCTTCACGCAGCAGCAGTCTCTGAATAGACTGTGACTCCT  397

seq1  ACTGGGACAGAATGGAAGCTCAAGGCTTTGGGAAAGGCAGATGCGTATCT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACAGAATGGAAGCTCAAGGCTTTGGGAAAGGCAGATGCGTATCT  447

seq1  CAATGACTTCTAAGGGCTGGTTCTTCCAGGCTAGCCTTGGCGGTGGTTAA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTCTAAGGGCTGGTTCTTCCAGGCTAGCCTTGGCGGTGGTTAA  497

seq1  CCAGATTGGGATGGGAGGGTCTGGACTTTCTGCTCCATGCTTTTTTCTTC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGGGATGGGAGGGTCTGGACTTTCTGCTCCATGCTTTTTTCTTC  547

seq1  AACTACACACAGAAATTCAGAATGAATTGGTTCAGAGCTTACAAAAGTAT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACACACAGAAATTCAGAATGAATTGGTTCAGAGCTTACAAAAGTAT  597

seq1  TTGTGCACGGCAATCTTGCGTTACTTGAAAGGAGGGAACAAAAAGACTCC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACGGCAATCTTGCGTTACTTGAAAGGAGGGAACAAAAAGACTCC  647

seq1  CTTGTCTACCCAGAATAAAAGGACACCCAGAAGAGACTCGGGAAGGTGAG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTACCCAGAATAAAAGGACACCCAGAAGAGACTCGGGAAGGTGAG  697

seq1  AGACGAAGGGCCAGACAGGTGAGGCAGCAGGGGTTGGCATCTCCTTTAGC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAAGGGCCAGACAGGTGAGGCAGCAGGGGTTGGCATCTCCTTTAGC  747

seq1  TTCAGCAGTGTGCCAAGCAGAGGGCTAAGTGGAAGAACAGGAGAGTGGTG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGTGTGCCAAGCAGAGGGCTAAGTGGAAGAACAGGAGAGTGGTG  797

seq1  AGAAGCCCTGGCCTGATGGCCGAGGCAGAGCTGCCTCTCTTCTTGGGCCT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCTGGCCTGATGGCCGAGGCAGAGCTGCCTCTCTTCTTGGGCCT  847

seq1  CGGCCCATTGCAAAGAGGGGTGTTGCAGCAGCTGATGCACACGGAGTTCA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCATTGCAAAGAGGGGTGTTGCAGCAGCTGATGCACACGGAGTTCA  897

seq1  GTTTCCCAGGGGAACAGAAGGACTGGTACCCAGCTGAAGCAATGAGACAG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGGGGAACAGAAGGACTGGTACCCAGCTGAAGCAATGAGACAG  947

seq1  GCTGCTGACGATGCACACGACTTCCGGTACATGATCCCTATAACACAGGC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGACGATGCACACGACTTCCGGTACATGATCCCTATAACACAGGC  997

seq1  CCAGAGAAGTGGGGTTAGCATATGTGATCTGCAGTCCAGCTATCTCTTTG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGTGGGGTTAGCATATGTGATCTGCAGTCCAGCTATCTCTTTG  1047

seq1  TGCCCAAATCTGAGTGCATAACCTTTCCTTAACTCCTCCCACAGAAAGGG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAATCTGAGTGCATAACCTTTCCTTAACTCCTCCCACAGAAAGGG  1097

seq1  CTCTTATCTCCTGATCTGGGAGATGGTTCAGGGGATAAGAATTC  1122
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCTCCTGATCTGGGAGATGGTTCAGGGGATAAGAATTC  1141


seq1: chr1_127647734_127648911
seq2: B6Ng01-316K14.g_69_1255

seq1  GAATTCATAACTGGGGCACCAGCTCAAGTGTGACCCAGAAATGAAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTGGGGCACCAGCTCAAGTGTGACCCAGAAATGAAAGCTA  50

seq1  CTCTAATTTGCGAACCTTGAACCACACTGAGCTCCAAATTAATCTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTTGCGAACCTTGAACCACACTGAGCTCCAAATTAATCTTTTTC  100

seq1  TTTTTCCACTGTGCTGAGCACTGAACCAAGGATTTTGAAAACAGCAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCACTGTGCTGAGCACTGAACCAAGGATTTTGAAAACAGCAACAC  150

seq1  CTAGTAAGCCAGCTTGAACCAGAACGAAGCCTATTCATTTTCTAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGCCAGCTTGAACCAGAACGAAGCCTATTCATTTTCTAAAAGTA  200

seq1  TTGAGCTGGAACAATACAGAAATGTTAAAGTATCTTTCAAACTAAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGGAACAATACAGAAATGTTAAAGTATCTTTCAAACTAAACCTG  250

seq1  GATTGAGCTGATCATTCACAAGTGCCTAGCAAACAATAGAACAAGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCTGATCATTCACAAGTGCCTAGCAAACAATAGAACAAGAATTC  300

seq1  TTTCTGGAGAGACAATTCTGTGCCTCTCACATGCCTGCCTTCCTCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGAGACAATTCTGTGCCTCTCACATGCCTGCCTTCCTCACTGC  350

seq1  TAAATTAGACCACCAATGTCCTTTTTTTCTACATTGAAACCCTGAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGACCACCAATGTCCTTTTTTTCTACATTGAAACCCTGAGTTGA  400

seq1  ATCCTTAGGCCCGACTTTTCATTGGGAAGTATCCTTTGTGCATTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGGCCCGACTTTTCATTGGGAAGTATCCTTTGTGCATTTATTTC  450

seq1  ACATTTCCCTTTTTGTTTTGTGGGAAAGTTTATGTGCATATAAACTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCTTTTTGTTTTGTGGGAAAGTTTATGTGCATATAAACTGTGT  500

seq1  GTGCACACGTGCACACATATACACATATGCATATGTGCAGAAAATGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACGTGCACACATATACACATATGCATATGTGCAGAAAATGGCCT  550

seq1  CGGGTACGGGTATAATTCTTCAGGCACCGCTCATCTTTTGTTGAGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTACGGGTATAATTCTTCAGGCACCGCTCATCTTTTGTTGAGACAGG  600

seq1  GTTGCTCACTGGTCTGAAGATTGCCAAGTAGTGTAGACTGGCTTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCACTGGTCTGAAGATTGCCAAGTAGTGTAGACTGGCTTCCCAGC  650

seq1  AAATCTCCAGGATCTGTGTGGCTCTGCCCCCTCTAGCACAGTGATCGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCAGGATCTGTGTGGCTCTGCCCCCTCTAGCACAGTGATCGCAA  700

seq1  GCACATAGCATATGCCTGGGCTTTTGATGCTGGTACTGGGGAATCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGCATATGCCTGGGCTTTTGATGCTGGTACTGGGGAATCAAAGC  750

seq1  AAGATCTCCACGTTTTAATGACAAGTGCCTTACCAACTGAGCCATCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGATCTCCACGTTTTAATGACAAGTGCCTTACCAACTGAGCCATCTCT-  799

seq1  CAGGCTCTGTAGCTATCTTTCTTTTTTAAAAAATTAATT-AAAAAAAAAC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGGCTCTGTAGCTATCTTTCTTTTTTAAAAAATTAATTAAAAAAAAAAC  849

seq1  AGAGGAGGGGCATGCACATGGGCATTCATGTGTA-TACTATGGTGTGACT  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGGAGGGGCATGCACATGGGCATTCATGTGTATTACTATGGTGTGACT  899

seq1  ATGGAAGTCTGTTTC-TCAGGAGTCCATTTCCCCC-TTCTACAATGTAGT  946
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  ATGGAAGTCTGTTTCTTCAGGAGTCCATTTCCCCCTTTCTACAATGTAGT  949

seq1  TTTAGAGATCAAACTTT-GGTTGTCAGGTTTGGTGTCAAGTG--CATTTA  993
      ||||||||||||||||| |||||||||||||||||   ||||   |||||
seq2  TTTAGAGATCAAACTTTGGGTTGTCAGGTTTGGTGGTCAGTGTCAATTTA  999

seq1  CCCCCC-AATAT--ATTTTGCC-TACCC--ACTCC-TCAACTGG-AACT-  1034
      |||||| |||||   ||||||| |||||   |||| ||| |||| |||| 
seq2  CCCCCCTAATATTATTTTTGCCTTACCCCACCTCCTTCACCTGGAAACTT  1049

seq1  -GGAATTGCATATGG-TTCTGGGAATCAAACCCTGGTCTTCTGGAAGAGC  1082
       | |||||||||||| |||||| |||| |||||||||| ||||| | |||
seq2  GGAAATTGCATATGGTTTCTGGCAATCTAACCCTGGTC-TCTGG-ATAGC  1097

seq1  ACAGTGGC-TCTTAACCACTCAGTCATCTCTC-CAGACCCTTCCTCAACT  1130
       ||||||| ||| |||||||||||||| |||| |||| |||||||| |||
seq2  -CAGTGGCTTCTAAACCACTCAGTCAT-TCTCTCAGA-CCTTCCTC-ACT  1143

seq1  TTCTTGATGGCTTTGTATACATTTTGTAACTA-CTTA--CAAACCTCAGC  1177
          |||||   ||| ||||  ||||| |||| ||||  |||||||||||
seq2  ---CTGATG--CTTGGATAC-GTTTGT-ACTACCTTAACCAAACCTCAGC  1186

seq1  A  1178
      |
seq2  A  1187


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