BAC Information

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BAC

Clone NameB6Ng01-317G09
Chromosome1 (Build37)
Map Location 149,203,158 - 149,329,667
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317G09.bB6Ng01-317G09.g
ACCGA107553GA107554
length1,014854
definitionB6Ng01-317G09.b B6Ng01-317G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,328,664 - 149,329,667)(149,203,158 - 149,203,781)
sequence
gaattccaagatttcatgtcttaggagtttccacccatgagcctcggggt
ccctcctacaaacacacaacagtggggttgtaccatggagctccaagcct
ctgcatgttgttggagcatggcagagctccgtgcatcctcttggccctct
ctgggagcattttgttcagagacattctcaaacactagaattttggcagc
agggtagggttggtggttgtgtgggattagaaagctcagagcaatagtaa
acaggttggcaatgactgtagcacaattgctacaggataccccacagtgt
gtaagagtgttcagtttagtacacccttaatttgctatctctttaggact
ccttggctagaaccacttcctgcactcgcagccctttcctaggatctggc
acattcccacacatgtgatgcatttgaattccattttccatatgtcatat
tctttggatttaatgttccaactgtgaaatacagctgcaagaggggagtt
tcagattaggaagaaaaaaacctttgcataaggattgaagctgagccatc
ccaaaactagcaaaagcaaatgaaacaaagaagcccacatctgcattggt
ggcacgatgaacagaggactcagtagcattcaccaagtggcagtgggatg
ttctccaaaggaacacacatgtacacactttaagcgaccctcaaagtaag
tcacttcactggtccctggggaggttttggagattgttctgaaaggatta
ttgtgaaagaaaagaaatcatttttgttattatttgcatgctgaatttat
tttagcattgggaaacagaaaggcaggtgttaggccaaaatgtctgttaa
aattctgtagtccctgggggctacttgaaatagctaagtaggtgaagaca
ttggacactattcttgaatatcttgaactttatcccttggaacccatgaa
gaacaagaagagaactcacttgactctagcaagttgttctttgacgtcta
tatacttaccaccc

gaattcatgaattaagggttgcaaggttctctataatgaacttgctatta
ggtaaaatattcatgaatttatattatttacctttatgctggtattattt
ttcctttcttttaaaaatatttttattattcccaattctaagaaggggca
aagtgtccacactttggtcgtcattcttcttgaatttcatgtgttttgca
aattacaacttatatcttgggtattctaagtttctgggctaatatccact
tatcagtgagtacatatcatttgagttcttttgtgattaggttacctcac
tcaggataatgccctccaggactaaccatttgcctaggaatttcataaat
ttattctttttaatatctgagtagtactccattgtgtaaatgtaccacct
cttttatccattcctctgttgaggagaatctgggttctttccagcttctg
gctattataaataaggctgctatgaacatagtggagcatgtttctttctt
actagttggaacattttctggatatatgcccaggagaagtattgcgggat
cctccggtagtaccatgtccaatttttgaggaaccaacagactggtttcc
agagtgggagttacagagacaaagtttggagctgagacaaaaagatggac
catctacagactgccatatccagggatccatttcataatcagcctccaaa
cgctgacaccattgcatacactagcaagatttttctgaaaggaccctgat
atagctgtctcttgtgagactacgctggggcctagcaaacacataagtag
atgctcacagtcagctattgaatcgatcacagggcccccaatggaggagc
taga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149328664_149329667
seq2: B6Ng01-317G09.b_49_1062 (reverse)

seq1  GGGTGGTATGTATATGGACGTCAGAGAACAACTTGCAGGAGTC-AGTGAG  49
      |||||||| |||||| ||||||| ||||||||||||  ||||| ||||||
seq2  GGGTGGTAAGTATATAGACGTCAAAGAACAACTTGCTAGAGTCAAGTGAG  50

seq1  TTCTCTTCTTGTTCTTCATGGGTTCC-AGGGATTTAGTTCCTG-TCTTCA  97
      |||||||||||||||||||||||||| ||||||  |||||  | | ||||
seq2  TTCTCTTCTTGTTCTTCATGGGTTCCAAGGGATAAAGTTCAAGATATTCA  100

seq1  GGCTTGGTGTCCAATGTCTTCACCTACTTAGCTATTTC-AGTAGCCCCCA  146
       |  | |||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAATAGTGTCCAATGTCTTCACCTACTTAGCTATTTCAAGTAGCCCCCA  150

seq1  -GGACTACAGAATTTTAACAGACATTTTGGCCTTACACCTGCCTTTCTGT  195
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGACTACAGAATTTTAACAGACATTTTGGCCTAACACCTGCCTTTCTGT  200

seq1  TT-CCAATGCTAAAATAAATTCAGCCTGC-AATAATAAC-AAAATGATTT  242
      || |||||||||||||||||||||| ||| ||||||||| ||||||||||
seq2  TTCCCAATGCTAAAATAAATTCAGCATGCAAATAATAACAAAAATGATTT  250

seq1  CTTTTCTTTCACAATAATCCTTTCAGAACAATCTCC-AAACCTCCCCAGG  291
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTTCTTTCACAATAATCCTTTCAGAACAATCTCCAAAACCTCCCCAGG  300

seq1  GACCAGTGAAGTGACTTACTTTGAGGGTCGCTT-AAGTGTGTACATGTGT  340
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACCAGTGAAGTGACTTACTTTGAGGGTCGCTTAAAGTGTGTACATGTGT  350

seq1  GTTCCTTTGGAGAACATCCCACTGCCACTTGGTGAATGCTACTGAGTCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTGGAGAACATCCCACTGCCACTTGGTGAATGCTACTGAGTCCT  400

seq1  CTGTTCATCGTGCCACCAATGCAGATGTGGGCTTCTTTGTTTCATTTGCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCGTGCCACCAATGCAGATGTGGGCTTCTTTGTTTCATTTGCT  450

seq1  TTTGCTAGTTTTGGGATGGCTCAGCTTCAATCCTTATGCAAAGGTTTTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTTTTGGGATGGCTCAGCTTCAATCCTTATGCAAAGGTTTTTT  500

seq1  TCTTCCTAATCTGAAACTCCCCTCTTGCAGCTGTATTTCACAGTTGGAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAATCTGAAACTCCCCTCTTGCAGCTGTATTTCACAGTTGGAAC  550

seq1  ATTAAATCCAAAGAATATGACATATGGAAAATGGAATTCAAATGCATCAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCCAAAGAATATGACATATGGAAAATGGAATTCAAATGCATCAC  600

seq1  ATGTGTGGGAATGTGCCAGATCCTAGGAAAGGGCTGCGAGTGCAGGAAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGGAATGTGCCAGATCCTAGGAAAGGGCTGCGAGTGCAGGAAGT  650

seq1  GGTTCTAGCCAAGGAGTCCTAAAGAGATAGCAAATTAAGGGTGTACTAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGCCAAGGAGTCCTAAAGAGATAGCAAATTAAGGGTGTACTAAA  700

seq1  CTGAACACTCTTACACACTGTGGGGTATCCTGTAGCAATTGTGCTACAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTCTTACACACTGTGGGGTATCCTGTAGCAATTGTGCTACAGT  750

seq1  CATTGCCAACCTGTTTACTATTGCTCTGAGCTTTCTAATCCCACACAACC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAACCTGTTTACTATTGCTCTGAGCTTTCTAATCCCACACAACC  800

seq1  ACCAACCCTACCCTGCTGCCAAAATTCTAGTGTTTGAGAATGTCTCTGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCTACCCTGCTGCCAAAATTCTAGTGTTTGAGAATGTCTCTGAA  850

seq1  CAAAATGCTCCCAGAGAGGGCCAAGAGGATGCACGGAGCTCTGCCATGCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCTCCCAGAGAGGGCCAAGAGGATGCACGGAGCTCTGCCATGCT  900

seq1  CCAACAACATGCAGAGGCTTGGAGCTCCATGGTACAACCCCACTGTTGTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACATGCAGAGGCTTGGAGCTCCATGGTACAACCCCACTGTTGTG  950

seq1  TGTTTGTAGGAGGGACCCCGAGGCTCATGGGTGGAAACTCCTAAGACATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGGAGGGACCCCGAGGCTCATGGGTGGAAACTCCTAAGACATG  1000

seq1  AAATCTTGGAATTC  1004
      ||||||||||||||
seq2  AAATCTTGGAATTC  1014


seq1: chr1_149203158_149203781
seq2: B6Ng01-317G09.g_67_690

seq1  GAATTCATGAATTAAGGGTTGCAAGGTTCTCTATAATGAACTTGCTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATTAAGGGTTGCAAGGTTCTCTATAATGAACTTGCTATTA  50

seq1  GGTAAAATATTCATGAATTTATATTATTTACCTTTATGCTGGTATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATATTCATGAATTTATATTATTTACCTTTATGCTGGTATTATTT  100

seq1  TTCCTTTCTTTTAAAAATATTTTTATTATTCCCAATTCTAAGAAGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTTTAAAAATATTTTTATTATTCCCAATTCTAAGAAGGGGCA  150

seq1  AAGTGTCCACACTTTGGTCGTCATTCTTCTTGAATTTCATGTGTTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCACACTTTGGTCGTCATTCTTCTTGAATTTCATGTGTTTTGCA  200

seq1  AATTACAACTTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAACTTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACT  250

seq1  TATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTAGGTTACCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTAGGTTACCTCAC  300

seq1  TCAGGATAATGCCCTCCAGGACTAACCATTTGCCTAGGAATTTCATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAATGCCCTCCAGGACTAACCATTTGCCTAGGAATTTCATAAAT  350

seq1  TTATTCTTTTTAATATCTGAGTAGTACTCCATTGTGTAAATGTACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTTTAATATCTGAGTAGTACTCCATTGTGTAAATGTACCACCT  400

seq1  CTTTTATCCATTCCTCTGTTGAGGAGAATCTGGGTTCTTTCCAGCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCATTCCTCTGTTGAGGAGAATCTGGGTTCTTTCCAGCTTCTG  450

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCTTTCTT  500

seq1  ACTAGTTGGAACATTTTCTGGATATATGCCCAGGAGAAGTATTGCGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGGAACATTTTCTGGATATATGCCCAGGAGAAGTATTGCGGGAT  550

seq1  CCTCCGGTAGTACCATGTCCAATTTTTGAGGAACCAACAGACTGGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGTAGTACCATGTCCAATTTTTGAGGAACCAACAGACTGGTTTCC  600

seq1  AGAGTGGGAGTTACAGAGACAAAG  624
      ||||||||||||||||||||||||
seq2  AGAGTGGGAGTTACAGAGACAAAG  624


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