BAC Information

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BAC

Clone NameB6Ng01-317H17
Chromosome1 (Build37)
Map Location 181,519,857 - 181,689,766
singlet/doubletdoublet
Overlap gene9630058J23Rik, Sccpdh, Gm1305, Ahctf1
Upstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354, LOC433941, Tfb2m, LOC100040874
Downstream geneLOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H17.bB6Ng01-317H17.g
ACCGA107615GA107616
length1,0811,122
definitionB6Ng01-317H17.b B6Ng01-317H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,688,681 - 181,689,766)(181,519,857 - 181,520,970)
sequence
gaattcatagacctctgtatcaaaaaacaaaagacccaaacatgattttg
atagtcattcaaaaatatgcataagaagtacccgcaaagcaaaggtgatg
tccatcagtgcttgctgtctgaaacacggtctagtttaggtatggtgact
cacagaggctgagagaggaatgtgagtttcaggtcaatcttggttattat
agggagatactctccagcagtgaagagaacccccaggctagcagattggt
tctagttcctaattatactcaagtgtaaggttaccttgaagtatacacta
gcacactgcttcagttatagagccagttgtcctaatcaatcagtatgatc
actggagccatccagcacctttcattcaacactttgattaacactgtgtg
gaagataaacagtgataactttaatgctttgaggctctatgatcatttaa
taaaactaacccacatagacttttaatttgtaaggcacagaatagctcat
taccttatgagtgagcagtgggtctgatattaaaacctacccacaaaact
tggatgatcatctttgtcaactcagtcaaatattttttgctgaggataaa
aaatgtaataactggaatcttccagtacttcaacaaaaatagtaggaaaa
ataaaggattttcctggagttttgttgttgttgttgttccttattttgta
atttttcattttaataaaaaatgtttcgtaggtttgatggacatttgcaa
caatcaagaagcaagtgattattcatattagaaaagttagtttcaatgaa
aatctagatgaatgtcaatatttggaaagctagtttcttttttcatttgt
tgtttgtttcctctgtgtagcctggctgacctggatctcattctgaaggc
caggctgttctcagattcagagatctgcctgcttctgcctccctctgtca
gcacctggacagctggttatgggcaagttgtgaagatttagttgttgggt
atagtcatcagtactattagatactgtatctagatatctccaccacacat
agaatctctgcaatgtttcagagactgcttt
gaattcagatttgccttcctctgcctctctaatgctgggattaaaggtgt
gatccaccgtgtcaagctattttctactcttatattttgctttttttggg
gggcgggggtctttttacttagtccaagatggctttaaagttcctacaaa
ggatggcctggaaccgattctcctgcctctgttttaaagcgctgaggcac
aggagagtgccactgtgtccggcttagttcttactcactgcaacataggg
ctgtaagtaagctttattagtgtttgcctttgaaagtttttcttaaaagg
ggggagtgcaggtttatctcaatgatctccctcacctggcagtgagggtc
aggagcacaccttggtttttcccgtctccactgctttatatacggctagc
gatcttagaaggtagatgcccagagaagccaaaacaaagctagaaatccg
agtttaagtaacttggcaaaagtacaggagataagtgttggaagcaggcc
tggcttctggattgtccattctctggttcttgggcaagaaaagttctctc
ctcttctttctcttcctcctctttcttcttcctcctttcccttcctcctc
ttcttcttcctctttttttcttccctcttcttcctcctctttttcttttt
ttgctgtgcaaggaatatgatcccaggcctcataccattaagcaactccc
actgcctcatattcctttcttttaaaacaatgttgttaattttgtgtatt
tgtggaggtcagacctctgtgtcaggtgtcatcaattgcttgtccaccta
attattttacatttgattgattgagactgaatttcagtcctgacttgttt
tatgccaacttgtcccaagctagagtcatcagagaggtggaaaccctaat
tgacaaaatgcctccgtaagatgggggctgtaggcaagactgtggggtgt
tctcgaaatgagtgattgaagtgagagggcccagcctattggtggggtgg
gtgccatccctgagctggtgatcctgggttactataagaaagccaggctg
gagcaagacacgagggagcacccaggttcagcagcaccccttcatagccc
tcatcaactctggcttccaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181688681_181689766
seq2: B6Ng01-317H17.b_48_1128 (reverse)

seq1  AAAGCAGTCTCTGAAACATTTGCAGAGATTTCTATGTGT-GTGGAGATTA  49
      |||||||||||||||||| ||||||||| |||||||||| ||||||| ||
seq2  AAAGCAGTCTCTGAAACA-TTGCAGAGA-TTCTATGTGTGGTGGAGA-TA  47

seq1  TCTAGATAACAGTATCT-ATAGTACTGATGACTAATACCCAACAACTAAA  98
      ||||||| ||||||||| ||||||||||||||| ||||||||||||||||
seq2  TCTAGAT-ACAGTATCTAATAGTACTGATGACT-ATACCCAACAACTAAA  95

seq1  TCTTCACAACTTGCCCAATAACCAGCTTGTCCAGGTGCTGACAGAGGGAG  148
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TCTTCACAACTTGCCC-ATAACCAGC-TGTCCAGGTGCTGACAGAGGGAG  143

seq1  GCAGAAGCAGGCAGATCTCTGAATCTGAGAACAGCCTGGCCTTCAGAATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAGGCAGATCTCTGAATCTGAGAACAGCCTGGCCTTCAGAATG  193

seq1  AGATCCAGGTCAGCCAGGCTACACAGAGGAAACAAACAACAAATGAAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGTCAGCCAGGCTACACAGAGGAAACAAACAACAAATGAAAAA  243

seq1  AGAAACTAGCTTTCCAAATATTGACATTCATCTAGATTTTCATTGAAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGCTTTCCAAATATTGACATTCATCTAGATTTTCATTGAAACT  293

seq1  AACTTTTCTAATATGAATAATCACTTGCTTCTTGATTGTTGCAAATGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTAATATGAATAATCACTTGCTTCTTGATTGTTGCAAATGTCC  343

seq1  ATCAAACCTACGAAACATTTTTTATTAAAATGAAAAATTACAAAATAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCTACGAAACATTTTTTATTAAAATGAAAAATTACAAAATAAGG  393

seq1  AACAACAACAACAACAAAACTCCAGGAAAATCCTTTATTTTTCCTACTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACAAAACTCCAGGAAAATCCTTTATTTTTCCTACTAT  443

seq1  TTTTGTTGAAGTACTGGAAGATTCCAGTTATTACATTTTTTATCCTCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGAAGTACTGGAAGATTCCAGTTATTACATTTTTTATCCTCAGC  493

seq1  AAAAAATATTTGACTGAGTTGACAAAGATGATCATCCAAGTTTTGTGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTGACTGAGTTGACAAAGATGATCATCCAAGTTTTGTGGGT  543

seq1  AGGTTTTAATATCAGACCCACTGCTCACTCATAAGGTAATGAGCTATTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAATATCAGACCCACTGCTCACTCATAAGGTAATGAGCTATTCT  593

seq1  GTGCCTTACAAATTAAAAGTCTATGTGGGTTAGTTTTATTAAATGATCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTACAAATTAAAAGTCTATGTGGGTTAGTTTTATTAAATGATCAT  643

seq1  AGAGCCTCAAAGCATTAAAGTTATCACTGTTTATCTTCCACACAGTGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCAAAGCATTAAAGTTATCACTGTTTATCTTCCACACAGTGTTA  693

seq1  ATCAAAGTGTTGAATGAAAGGTGCTGGATGGCTCCAGTGATCATACTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTGTTGAATGAAAGGTGCTGGATGGCTCCAGTGATCATACTGAT  743

seq1  TGATTAGGACAACTGGCTCTATAACTGAAGCAGTGTGCTAGTGTATACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGGACAACTGGCTCTATAACTGAAGCAGTGTGCTAGTGTATACTT  793

seq1  CAAGGTAACCTTACACTTGAGTATAATTAGGAACTAGAACCAATCTGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAACCTTACACTTGAGTATAATTAGGAACTAGAACCAATCTGCTA  843

seq1  GCCTGGGGGTTCTCTTCACTGCTGGAGAGTATCTCCCTATAATAACCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGGTTCTCTTCACTGCTGGAGAGTATCTCCCTATAATAACCAAG  893

seq1  ATTGACCTGAAACTCACATTCCTCTCTCAGCCTCTGTGAGTCACCATACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTGAAACTCACATTCCTCTCTCAGCCTCTGTGAGTCACCATACC  943

seq1  TAAACTAGACCGTGTTTCAGACAGCAAGCACTGATGGACATCACCTTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGACCGTGTTTCAGACAGCAAGCACTGATGGACATCACCTTTGC  993

seq1  TTTGCGGGTACTTCTTATGCATATTTTTGAATGACTATCAAAATCATGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGGTACTTCTTATGCATATTTTTGAATGACTATCAAAATCATGTT  1043

seq1  TGGGTCTTTTGTTTTTTGATACAGAGGTCTATGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTTTGTTTTTTGATACAGAGGTCTATGAATTC  1081

seq1: chr1_181519857_181520970
seq2: B6Ng01-317H17.g_65_1186

seq1  GAATTCAGATTTGCCTTCCTCTGCCTCTCTAATGCTGGGATTAAAGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTGCCTTCCTCTGCCTCTCTAATGCTGGGATTAAAGGTGT  50

seq1  GATCCACCGTGTCAAGCTATTTTCTACTCTTATATTTTGCTTTTTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCGTGTCAAGCTATTTTCTACTCTTATATTTTGCTTTTTTTGGG  100

seq1  GGGCGGGGGTCTTTTTACTTAGTCCAAGATGGCTTTAAAGTTCCTACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGGTCTTTTTACTTAGTCCAAGATGGCTTTAAAGTTCCTACAAA  150

seq1  GGATGGCCTGGAACCGATTCTCCTGCCTCTGTTTTAAAGCGCTGAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCTGGAACCGATTCTCCTGCCTCTGTTTTAAAGCGCTGAGGCAC  200

seq1  AGGAGAGTGCCACTGTGTCCGGCTTAGTTCTTACTCACTGCAACATAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTGCCACTGTGTCCGGCTTAGTTCTTACTCACTGCAACATAGGG  250

seq1  CTGTAAGTAAGCTTTATTAGTGTTTGCCTTTGAAAGTTTTTCTTAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTAAGCTTTATTAGTGTTTGCCTTTGAAAGTTTTTCTTAAAAGG  300

seq1  GGGGAGTGCAGGTTTATCTCAATGATCTCCCTCACCTGGCAGTGAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGCAGGTTTATCTCAATGATCTCCCTCACCTGGCAGTGAGGGTC  350

seq1  AGGAGCACACCTTGGTTTTTCCCGTCTCCACTGCTTTATATACGGCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACACCTTGGTTTTTCCCGTCTCCACTGCTTTATATACGGCTAGC  400

seq1  GATCTTAGAAGGTAGATGCCCAGAGAAGCCAAAACAAAGCTAGAAATCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGAAGGTAGATGCCCAGAGAAGCCAAAACAAAGCTAGAAATCCG  450

seq1  AGTTTAAGTAACTTGGCAAAAGTACAGGAGATAAGTGTTGGAAGCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGTAACTTGGCAAAAGTACAGGAGATAAGTGTTGGAAGCAGGCC  500

seq1  TGGCTTCTGGATTGTCCATTCTCTGGTTCTTGGGCAAGAAAAGTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGGATTGTCCATTCTCTGGTTCTTGGGCAAGAAAAGTTCTCTC  550

seq1  CTCTTCTTTCTCTTCCTCCTCTTTCTTCTTCCTCCTTTCCCTTCCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCTCTTCCTCCTCTTTCTTCTTCCTCCTTTCCCTTCCTCCTC  600

seq1  TTCTTCTTCCTCTTTTTTTCTTCCCTCTTCTTCCTCCTCTTTTTCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCTCTTTTTTTCTTCCCTCTTCTTCCTCCTCTTTTTCTTTTT  650

seq1  TTGCTGTGCAAGGAATATGATCCCAGGCCTCATACCATTAAGCAACTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGCAAGGAATATGATCCCAGGCCTCATACCATTAAGCAACTCCC  700

seq1  ACTGCCTCATATTCCTTTCTTTTAAAACAATGTTGTTAATTTTGTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCATATTCCTTTCTTTTAAAACAATGTTGTTAATTTTGTGTATT  750

seq1  TGTGGAGGTCAGACCTCTGTGTCAGGTGTCATCAATTGCTTGTCCACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCAGACCTCTGTGTCAGGTGTCATCAATTGCTTGTCCACCTA  800

seq1  ATTATTTTACATTTGATTGATTGAGACTGAATTTCAGTCCTGACTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTACATTTGATTGATTGAGACTGAATTTCAGTCCTGACTTGTTT  850

seq1  TATGCCAACTTGTCCCAAGCTAGAGTCATCAGAGAGGTGGAAACCCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAACTTGTCCCAAGCTAGAGTCATCAGAGAGGTGGAAACCCTAAT  900

seq1  TGACAAAATGCCTCCGTAAGAT-GGGGCTGTAGGCAAGACTGTGGGGTGT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGACAAAATGCCTCCGTAAGATGGGGGCTGTAGGCAAGACTGTGGGGTGT  950

seq1  TCTCGAAATGAGTGATTGAAGTGAGAGGGCCCAGCCTATT-GTGGG--TG  996
      |||||||||||||||||||||||||||||||||||||||| |||||   |
seq2  TCTCGAAATGAGTGATTGAAGTGAGAGGGCCCAGCCTATTGGTGGGGTGG  1000

seq1  GTGCCATCCCTGAGCTGGTGATCCTGGG-TACTATAAGAAAG-CAGGCT-  1043
      |||||||||||||||||||||||||||| ||||||||||||| |||||| 
seq2  GTGCCATCCCTGAGCTGGTGATCCTGGGTTACTATAAGAAAGCCAGGCTG  1050

seq1  GAGCAAGACACGA-GGAGCAACCCAG--TCAGCAGCACCCCTCCATAGCC  1090
      ||||||||||||| ||||| ||||||  |||||||||||||| |||||||
seq2  GAGCAAGACACGAGGGAGC-ACCCAGGTTCAGCAGCACCCCTTCATAGCC  1099

seq1  CTCCATCAACTCCTGCTTCCAGGT  1114
      || |||||||||  ||||||||||
seq2  CT-CATCAACTCTGGCTTCCAGGT  1122