BAC Information

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BAC

Clone NameB6Ng01-317M17
Chromosome1 (Build37)
Map Location 82,643,994 - 82,763,137
singlet/doubletdoublet
Overlap geneCol4a3, 5230400G24Rik, Tm4sf20
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream geneLOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M17.bB6Ng01-317M17.g
ACCGA107851GA107852
length1,194195
definitionB6Ng01-317M17.b B6Ng01-317M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,761,940 - 82,763,137)(82,643,994 - 82,644,188)
sequence
gaattcactaagtgtgttgagcatttgtttagtccttaaaacttttggcc
agttgttacatttcaagttagcctcccttcagaaatgggaattttacagg
aaactgcatataacacaacctcagggctcattactgattactttatgaag
tcatttgttttatgattttatgaccaaccccaatcagaggtgaacctttt
tatcttttgaaactgtaaccaagtaaaacattatgtagttaatctttaag
attatctactaaggggaaggggattgtcaatataaatgttacttgatcaa
gcattaaaagcattttaaaatgtttgttgtaaaatataatcagaaaggct
cttttactttatataaagttaactataagcctggtcttactcattctttt
tattgatttttacccattacataagggtacttttccaaagccagttatta
aaatcttagtggaaaacaaatggctgtaagtcaaactgattagaagactg
catgcaaaccctttacaaagcagagcttctgcactcatgctgagctatgg
ctttaagtgttgttctcatgttcaagaggactccccagagttaggcttct
atcacagtttttaactaaggttcttgtgtgcttcctttatgaaaatgtac
actttctagaactggaggaaagcctgggttcctgccaggaaaacaaactg
taattatttataaaaagaagagaaggaagactgaatttcacaaaatctta
tgcattcaaatatgtttaggaatactcaaccctaccattttagtgcaaaa
gtagccatagataatatgcaaatggattagggttccaataaaactttatt
tataaaaatgaggtgacagggtggggagtgcatccttaccagttcttgtc
ctacttcacttgttatataagatcagaaagcagtgtcttctgggaacaac
caaaaaagcttagtgtatacatgatgacaaagatttcttttccctttcct
tctggtctttcagctatgcaacaggggtagctggacaatccatacgtatg
ttgtggcttctgattggaaaggatcagtgtcagttgtataaacaaagcta
gcaccaacacgagtgacttgagtcagcatgcgaatagattgggtgtatgt
tgcctgcagctgcctgtggagagacacttgactcttcttgaaaa
cacctcagaagggaatggctcactttggccctgacagtccaatctcagaa
gactctgtaacagccttttgaaaagaaaagaaaagaagaggagaggagag
gagaggagaggagaggagaggagaggagaggagaggttagaggagaggag
aggagaggaaagaggataggagaggtattaggaggagaggaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82761940_82763137
seq2: B6Ng01-317M17.b_49_1242 (reverse)

seq1  TTTTCTAGAAGAGATTCA--TGTCTCTCACAAGGCAGCTTTCCCAGCACA  48
      ||||| |||||||  |||  ||||||||   ||||||||    |||   |
seq2  TTTTCAAGAAGAG--TCAAGTGTCTCTCCACAGGCAGCT---GCAGGCAA  45

seq1  CAT-CACCCCATCTAATCGCATGCTGACTTCATGTCACTTCGTGTTGTTG  97
      ||| ||||| ||||| |||||||||||| ||| ||||| |||||||| ||
seq2  CATACACCCAATCTATTCGCATGCTGAC-TCAAGTCAC-TCGTGTTGGTG  93

seq1  CTAAGCTTTGTTTATAC-ACTGAACACTGATCCCTTTCCAATTCAGAAGC  146
      || |||||||||||||| |||| |||||||| ||||||||| ||||||||
seq2  CT-AGCTTTGTTTATACAACTG-ACACTGAT-CCTTTCCAA-TCAGAAGC  139

seq1  CAC-ACATACGTATGGA-TGTCCAGCTACCCCTG-TGCATAGCTGAAAGA  193
      ||| ||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CACAACATACGTATGGATTGTCCAGCTACCCCTGTTGCATAGCTGAAAGA  189

seq1  CCAGAAGGAAAGGGAAAAGAAATCTTTGTCATCATGTATACACTAAGCTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGAAAGGGAAAAGAAATCTTTGTCATCATGTATACACTAAGCTT  239

seq1  TTTTGGTTGTTCCCAGAAGACACTGCTTTCTGATCTTATATAACAAGTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTGTTCCCAGAAGACACTGCTTTCTGATCTTATATAACAAGTGA  289

seq1  AGTAGGACAAGAACTGGTAAGGATGCACTCCCCACCCTGTCACCTCATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGACAAGAACTGGTAAGGATGCACTCCCCACCCTGTCACCTCATTT  339

seq1  TTATAAATAAAGTTTTATTGGAACCCTAATCCATTTGCATATTATCTATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAAAGTTTTATTGGAACCCTAATCCATTTGCATATTATCTATG  389

seq1  GCTACTTTTGCACTAAAATGGTAGGGTTGAGTATTCCTAAACATATTTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTTGCACTAAAATGGTAGGGTTGAGTATTCCTAAACATATTTGA  439

seq1  ATGCATAAGATTTTGTGAAATTCAGTCTTCCTTCTCTTCTTTTTATAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAGATTTTGTGAAATTCAGTCTTCCTTCTCTTCTTTTTATAAAT  489

seq1  AATTACAGTTTGTTTTCCTGGCAGGAACCCAGGCTTTCCTCCAGTTCTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTTTGTTTTCCTGGCAGGAACCCAGGCTTTCCTCCAGTTCTAG  539

seq1  AAAGTGTACATTTTCATAAAGGAAGCACACAAGAACCTTAGTTAAAAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTACATTTTCATAAAGGAAGCACACAAGAACCTTAGTTAAAAACT  589

seq1  GTGATAGAAGCCTAACTCTGGGGAGTCCTCTTGAACATGAGAACAACACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAAGCCTAACTCTGGGGAGTCCTCTTGAACATGAGAACAACACT  639

seq1  TAAAGCCATAGCTCAGCATGAGTGCAGAAGCTCTGCTTTGTAAAGGGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCATAGCTCAGCATGAGTGCAGAAGCTCTGCTTTGTAAAGGGTTT  689

seq1  GCATGCAGTCTTCTAATCAGTTTGACTTACAGCCATTTGTTTTCCACTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGTCTTCTAATCAGTTTGACTTACAGCCATTTGTTTTCCACTAA  739

seq1  GATTTTAATAACTGGCTTTGGAAAAGTACCCTTATGTAATGGGTAAAAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAATAACTGGCTTTGGAAAAGTACCCTTATGTAATGGGTAAAAAT  789

seq1  CAATAAAAAGAATGAGTAAGACCAGGCTTATAGTTAACTTTATATAAAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAGAATGAGTAAGACCAGGCTTATAGTTAACTTTATATAAAGT  839

seq1  AAAAGAGCCTTTCTGATTATATTTTACAACAAACATTTTAAAATGCTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCCTTTCTGATTATATTTTACAACAAACATTTTAAAATGCTTTT  889

seq1  AATGCTTGATCAAGTAACATTTATATTGACAATCCCCTTCCCCTTAGTAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGATCAAGTAACATTTATATTGACAATCCCCTTCCCCTTAGTAG  939

seq1  ATAATCTTAAAGATTAACTACATAATGTTTTACTTGGTTACAGTTTCAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTAAAGATTAACTACATAATGTTTTACTTGGTTACAGTTTCAAA  989

seq1  AGATAAAAAGGTTCACCTCTGATTGGGGTTGGTCATAAAATCATAAAACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAAGGTTCACCTCTGATTGGGGTTGGTCATAAAATCATAAAACA  1039

seq1  AATGACTTCATAAAGTAATCAGTAATGAGCCCTGAGGTTGTGTTATATGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTCATAAAGTAATCAGTAATGAGCCCTGAGGTTGTGTTATATGC  1089

seq1  AGTTTCCTGTAAAATTCCCATTTCTGAAGGGAGGCTAACTTGAAATGTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTGTAAAATTCCCATTTCTGAAGGGAGGCTAACTTGAAATGTAA  1139

seq1  CAACTGGCCAAAAGTTTTAAGGACTAAACAAATGCTCAACACACTTAGTG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCCAAAAGTTTTAAGGACTAAACAAATGCTCAACACACTTAGTG  1189

seq1  AATTC  1198
      |||||
seq2  AATTC  1194

seq1: chr1_82643994_82644188
seq2: B6Ng01-317M17.g_73_267

seq1  CACCTCAGAAGGGAATGGCTCACTTTGGCCCTGACAGTCCAATCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAAGGGAATGGCTCACTTTGGCCCTGACAGTCCAATCTCAGAA  50

seq1  GACTCTGTAACAGCCTTTTGAAAAGAAAAGAAAAGAAGAGGAGAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTAACAGCCTTTTGAAAAGAAAAGAAAAGAAGAGGAGAGGAGAG  100

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAAAGAGGAGAGGAG  150
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGTTAGAGGAGAGGAG  150

seq1  AGGAGAGGAAAGAGGAGAGGAGAGGAAAGAGGAGGAGAGGAAAGA  195
      |||||||||||||||| |||||||| |  ||||||||||||||||
seq2  AGGAGAGGAAAGAGGATAGGAGAGGTATTAGGAGGAGAGGAAAGA  195