BAC Information

Click to search

BAC

Clone NameB6Ng01-317N12
Chromosome4 (Build37)1 (Build37)
Map Location 17,304,606 - 17,305,07818,719,406 - 18,720,549
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383994, LOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N12.bB6Ng01-317N12.g
ACCGA107889GA107890
length8691,163
definitionB6Ng01-317N12.b B6Ng01-317N12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,304,606 - 17,305,078)(18,719,406 - 18,720,549)
sequence
gaattccttcctgtgaaacaggtctcaaatccaattcagagtgattggtc
accactatcaatagtcctgacaatatcatatcattggatacatggtatgt
gggatatcagaattgtaccattgctgtgtccagcctctttgttttttttt
tttttttttttcattttttattaggtatttagctcatttacatttccaat
gctataccaaaagtcccccttacccacccacccccactcccctacccacc
cactcctcccctttggccctggcgttcccctgtaccggggcacacaaagt
ctgcgtgtccaatgggcctctctttccagtgatggccgactaggccatct
tttgatacatatgcagctagagtcaagagctcaggggtactggttagttc
ataatgttgttccacctatagggttgaagatccctttagctccttgggta
ctttctctagctcctccattgggagccctgtgatccatccattagctgat
tgtgagcatccacttctgtgtttgctaggccccggcatagtctcacaaga
gacagctacatctgggtcctttcagtaaaatcttgctagtgtatgcaatg
gtgtcagcatttggaagctgattatggggtggatccctggatatggcagt
ctctacatggtccatcctttcatctcagctccatactttgtttctgtaac
tccttccatgggtgttttgttcccacttctaaggaggggcatagtgtcca
cacttcagtctacatttttcttgagtttcatgtgtttaggaaattgtatc
ttatatcgtgggtatcctaggttttgggctagtatccacttatcagtgag
tacattattgtgtgagttc
gaattcttataagcagctttgtgttattctgtttcaatctttctactcat
cttctgcaatgacatgtgagtcttagatacaagggctgtgttatagatgt
accagttgtgtactatgtctgtgtacttcagacatagggcataaattagt
taaagtggatctgacaagaaagtctcttcacaaagaaatagttttcatgg
ttccagaaaacccatacaagcttccaaggcaagtaggcaaacaatacttc
tatccaggtataatttttgtgaaccacagcaataaagagcatggtactat
aaccctaagagcataagagtggcactcatactttgtatgtaaccaatacc
tttccaattggactgaagaccttctccccaaaagagaaaccatgcctaaa
atgagaaaatgagccaaaagagatggtgatgtcataaatcttggaggaga
acctacagccagtactttactaaaccagcataattaattactgcatttta
aatatgtgttcttatacacataggtaaacatatttctaaccaatgtttct
tactttgacattaaggtgagacttgttatggagttttacaaatcttttcc
ctttaattatttagaagtcatgaatctatttttactgaacattctttaaa
tagataaaagttggcaagatagggaaaataaaattatagatcaagcagag
atcttaaattctgccattaagcttgaaaaaaatgttatcttgtatgtaga
aaattactgaatagcagagtaattgtttaaatgtcatgctttgaaattat
tatagaacacaaatgccaacccaggctactatacccagccaaactttcaa
ttagcatagatggagaaaccaaagtattccatgacaaaaccaaattcaca
caatatctttccacgaatccagcccttatcaaaggataataaagggaaaa
caccaacaaaagatggaaattacatccttgaaaagcaagaaagtaatact
taacaaactaaaaaaaagacgatgcagacagaatcacaacttacacaaaa
tgacaggaagcacatacttgatttctcttacatcaatggacctcccatga
agacttgactacagactgctaaccaaaacgatccaacatttgctgcttac
ggaaacccatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17304606_17305078
seq2: B6Ng01-317N12.b_182_595

seq1  CTCTTTGTTTTTTTTTTTTAATTTGAAGAGTTAGAAAACATTTTTTTATT  50
      |||||||||||||||||                       ||||||| ||
seq2  CTCTTTGTTTTTTTTTT-----------------------TTTTTTTTTT  27

seq1  CATAAAAAATACATTTTTTTCTGATATTTTCTTTTCTTTTTTTTATTAGG  100
      ||                                    ||||||||||||
seq2  CA------------------------------------TTTTTTATTAGG  41

seq1  GATTTACCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCC  150
       ||||| ||| ||||||||| ||||||||| ||||| ||||||| |||||
seq2  TATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCC  91

seq1  ACCCACCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGT  200
      ||||||||||| ||||||||||||||||||| ||  ||||||||||||||
seq2  ACCCACCCCCACTCCCCTACCCACCCACTCCTCCCCTTTGGCCCTGGCGT  141

seq1  TCCCCTGTACTGGGGCATATAAAGTTTTCAAATCCAATGGGCCTCTCTTT  250
      |||||||||| |||||| | ||||| | |   ||||||||||||||||||
seq2  TCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTT  191

seq1  GCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCA  241

seq1  AGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTT  350
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTT  291

seq1  GCAGTTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGG  400
      | || |||||||||||||||||||| |||||||||||||||||||||| |
seq2  GAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAG  341

seq1  CCGTGTGACCCATCCAATACCTGACTGTGATCATCCACTTCTGTGTTTGC  450
      || ||||| ||||||| || |||| ||||| |||||||||||||||||||
seq2  CCCTGTGATCCATCCATTAGCTGATTGTGAGCATCCACTTCTGTGTTTGC  391

seq1  TAGACCCCGGCATAGTCTCACAA  473
      ||| |||||||||||||||||||
seq2  TAGGCCCCGGCATAGTCTCACAA  414

seq1: chr1_18719406_18720549
seq2: B6Ng01-317N12.g_110_1230

seq1  CTACTCATCTTCTGCAATGACATGTGAGTCTTAGATACAAGGGCTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATCTTCTGCAATGACATGTGAGTCTTAGATACAAGGGCTGTGTT  50

seq1  ATAGATGTACCAGTTGTGTACTATGTCTGTGTACTTCAGACATAGGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTACCAGTTGTGTACTATGTCTGTGTACTTCAGACATAGGGCAT  100

seq1  AAATTAGTTAAAGTGGATCTGACAAGAAAGTCTCTTCACAAAGAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTAAAGTGGATCTGACAAGAAAGTCTCTTCACAAAGAAATAGT  150

seq1  TTTCATGGTTCCAGAAAACCCATACAAGCTTCCAAGGCAAGTAGGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTTCCAGAAAACCCATACAAGCTTCCAAGGCAAGTAGGCAAAC  200

seq1  AATACTTCTATCCAGGTATAATTTTTGTGAACCACAGCAATAAAGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTATCCAGGTATAATTTTTGTGAACCACAGCAATAAAGAGCAT  250

seq1  GGTACTATAACCCTAAGAGCATAAGAGTGGCACTCATACTTTGTATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTATAACCCTAAGAGCATAAGAGTGGCACTCATACTTTGTATGTAA  300

seq1  CCAATACCTTTCCAATTGGACTGAAGACCTTCTCCCCAAAAGAGAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACCTTTCCAATTGGACTGAAGACCTTCTCCCCAAAAGAGAAACCA  350

seq1  TGCCTAAAATGAGAAAATGAGCCAAAAGAGATGGTGATGTCATAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAATGAGAAAATGAGCCAAAAGAGATGGTGATGTCATAAATCTT  400

seq1  GGAGGAGAACCTACAGCCAGTACTTTACTAAACCAGCATAATTAATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAACCTACAGCCAGTACTTTACTAAACCAGCATAATTAATTACT  450

seq1  GCATTTTAAATATGTGTTCTTATACACATAGGTAAACATATTTCTAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAAATATGTGTTCTTATACACATAGGTAAACATATTTCTAACCA  500

seq1  ATGTTTCTTACTTTGACATTAAGGTGAGACTTGTTATGGAGTTTTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTACTTTGACATTAAGGTGAGACTTGTTATGGAGTTTTACAAA  550

seq1  TCTTTTCCCTTTAATTATTTAGAAGTCATGAATCTATTTTTACTGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCTTTAATTATTTAGAAGTCATGAATCTATTTTTACTGAACAT  600

seq1  TCTTTAAATAGATAAAAGTTGGCAAGATAGGGAAAATAAAATTATAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATAGATAAAAGTTGGCAAGATAGGGAAAATAAAATTATAGATC  650

seq1  AAGCAGAGATCTTAAATTCTGCCATTAAGCTTGAAAAAAATGTTATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGATCTTAAATTCTGCCATTAAGCTTGAAAAAAATGTTATCTTG  700

seq1  TATGTAGAAAATTACTGAATAGCAGAGTAATTGTTTAAATGTCATGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAAAATTACTGAATAGCAGAGTAATTGTTTAAATGTCATGCTTT  750

seq1  GAAATTATTATAGAACACAAATGCCAACCCAGGCTACTATACCCAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTATAGAACACAAATGCCAACCCAGGCTACTATACCCAGCCAA  800

seq1  ACTTTCAATTAGCATAGATGGAGAAACCAAAGTATTCCATGACAAAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAATTAGCATAGATGGAGAAACCAAAGTATTCCATGACAAAACCA  850

seq1  AATTCACACAATATCTTTCCACGAATCCAGCCCTTATCAAAGGATAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACACAATATCTTTCCACGAATCCAGCCCTTATCAAAGGATAATAA  900

seq1  AGGGAAAACACCAACAAAAAGATGGAAATTACACCCTTGAAAAAGCAAGA  950
      ||||||||||||||| ||||||||||||||||| ||||| ||||||||||
seq2  AGGGAAAACACCAAC-AAAAGATGGAAATTACATCCTTG-AAAAGCAAGA  948

seq1  AAGTAATACTTTAACAAACT-AAAAAAAGACAGATGCAAGAACAGAATCA  999
      ||||||||| |||||||||| |||||||||| ||||||   |||||||||
seq2  AAGTAATAC-TTAACAAACTAAAAAAAAGAC-GATGCA--GACAGAATCA  994

seq1  CAACTTTAACAACAAAAATGACAGGAAGCAACAATTACTTTGATTTCTCT  1049
      ||||||  ||    ||||||||||||||| |||  ||| |||||||||||
seq2  CAACTTACAC----AAAATGACAGGAAGC-ACA--TAC-TTGATTTCTCT  1036

seq1  TAACATCAATGGACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTA  1099
      | ||||||||||||  |||   |  ||||| | |||| ||||||| ||||
seq2  T-ACATCAATGGACCTCCC---ATGAAGAC-TTGACT-ACAGACT-GCTA  1079

seq1  CACAAACAGAACCCAACATTTTGCTGCTTACAGGAAACCCATCTC  1144
       || || |  | |||||| |||||||||||| |||||||||||||
seq2  -ACCAAAACGATCCAACA-TTTGCTGCTTAC-GGAAACCCATCTC  1121