BAC Information

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BAC

Clone NameB6Ng01-318A04
Chromosome1 (Build37)
Map Location 119,068,166 - 119,230,478
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318A04.bB6Ng01-318A04.g
ACCGA108006GA108007
length1,1521,092
definitionB6Ng01-318A04.b B6Ng01-318A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,068,166 - 119,068,962)(119,229,392 - 119,230,478)
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggaagtttctcaagaactaatctgaa
ctcctgctactttcaatgatgagatatatcagggttctgaacttgctaca
accctaaacgttcttctgtctggtgacacagtccactgccccacaaacgt
acttcacactcagattccctgtgcccccccctttcaattgataatattca
ctcatgggttgaatgaggagggacatctagtgaattgttcctgtgggaaa
aggatgtgtcagccatattcctgttagaggaagtacagattgttaaaaat
gttatgattgatatgggtttttttttttagtgactagttccccttaattt
acccattactttttatagtaaaccactaaattcttgtgctgcctggtagt
aacccaagttatgtgtgtcatcaatcagaacttggacctagagcttctaa
ac
gaattcaaggctttttaccagtttctcttcaattatattcagtgtatctg
gttttatgttgaggttcttgatccacttgaacttgacttgcaagtgctct
taatggatgaatcatttctttagaactggtgtatacttttctctgtttcg
ttgtatgtttttattttttattaaaaatacacgtagaactggaaatacga
tgtcacatggtaaagttcattaaaacttgaagaattatatagatgtgtcc
aaaatcaactcacactttatgttcttgaaagcttgtgaattttgctatgt
tgtgaattttgcctcatcaaagtgaactgatgtctttcttcatagtcatt
ccagagtaggcacaagcgtaccaatgaagtttgaacttgtattctccaac
aacagttaatattgaataattataaataatatatatgtgtatatgtgaca
tttatatattttctttaaaatgtgattggagtctctgagggctgacaact
agagaacaaaggaagaatatggtctattcagtgttctgtgtatatatgca
actttgatgtgtttttccaatgacttcctcttttccataatgcagctgct
tttaatatcacaaccctgcagtttttatacatttaattgaggtgtttgtt
acctgttatgggagatacaacagttaaaataggtataaaagacacagtca
cactgtgatactggtctttttcagcttttaaatattaatctactgtgaga
cagtatggaagcataatgaactgcttcctggaagaaaagggctctgttcc
ctgattttctggaagaaaacctgtaacagaaaaaaatgtccactcaaatc
cttccctgtttttagtctaattattttatttgtatgtgggtacccaattt
gtaaaactaatatgggagttaaagattattgagactaacttgttcgaatt
attttttgagtatctttcactttttattataaaagcagttaccatcagac
cttgtactaatacacatgacacttacagagagataaccttagaggaaatt
cagttagttgtcattcccttgaagaacagccaagctcacacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_119068166_119068962
seq2: B6Ng01-318A04.b_392_1197

seq1  CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA  50

seq1  TTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATATCTC  100

seq1  GGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAA  150

seq1  GTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC  200

seq1  CATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCA  250

seq1  AAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATT  300

seq1  CTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAA  350

seq1  AACCGAGGATAGCAAAAACTCTTCTCAAGGAAGTTTCTCAAGAACTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGGATAGCAAAAACTCTTCTCAAGGAAGTTTCTCAAGAACTAATC  400

seq1  TGAACTCCTGCTACTTTCAATGATGAGATATATCAGGGGTTCTGAACTTG  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAACTCCTGCTACTTTCAATGATGAGATATATCA-GGGTTCTGAACTTG  449

seq1  CTACAACCCTAAACGTTCTTCTGTCTGGTGACACAGTCCACTGCCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCCTAAACGTTCTTCTGTCTGGTGACACAGTCCACTGCCCCACA  499

seq1  AACGTACTTCACACTCAGATTCCCTGTGCCCCCCCCTTTCAATTGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTACTTCACACTCAGATTCCCTGTGCCCCCCCCTTTCAATTGATAAT  549

seq1  ATTCACTCAT-GGTTGAATGAGGAGGGACATCTAGTGAATTGTTCCTGTG  599
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCATGGGTTGAATGAGGAGGGACATCTAGTGAATTGTTCCTGTG  599

seq1  GG-AAAGGATGTGTCAGGCCATATTCCTGTTAGAGGAAGTACAGATTGTT  648
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAAAAGGATGTGTCA-GCCATATTCCTGTTAGAGGAAGTACAGATTGTT  648

seq1  AAAAATTGTTAATGATTGATATGG---TTTTTTTTTAGTGAACTAGTTTC  695
      ||||| |||| |||||||||||||   ||||||||||||| ||||| |||
seq2  AAAAA-TGTT-ATGATTGATATGGGTTTTTTTTTTTAGTG-ACTAG-TTC  694

seq1  CCCTTAA-TTACCCA-TACTTTTATAAGTAAACCACTAA--TC-TGTGCT  740
      ||||||| ||||||| |||||||   |||||||||||||  || ||||||
seq2  CCCTTAATTTACCCATTACTTTTTATAGTAAACCACTAAATTCTTGTGCT  744

seq1  G-CTGTAAGTAA-CCAAATTATGTGTGTTCATCAATCAAGACTGG---CT  785
      | |||  ||||| |||| ||||||||| ||||||||||  ||| |   ||
seq2  GCCTGGTAGTAACCCAAGTTATGTGTG-TCATCAATCAGAACTTGGACCT  793

seq1  AGAGC-TCTAAAC  797
      ||||| |||||||
seq2  AGAGCTTCTAAAC  806

seq1: chr1_119229392_119230478
seq2: B6Ng01-318A04.g_67_1158 (reverse)

seq1  CGTGTGAGCTT-GCTGTTCTTC-AGGGGATGACAACTACCTGATTTTCCT  48
      ||||||||||| |||||||||| |||| |||||||||| |||| ||||||
seq2  CGTGTGAGCTTGGCTGTTCTTCAAGGGAATGACAACTAACTGAATTTCCT  50

seq1  CTAAGGTTATCTCTTCTGTAAGTGTCATGTGTATTAGTACAAGGTCTGAT  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTATCTC-TCTGTAAGTGTCATGTGTATTAGTACAAGGTCTGAT  99

seq1  GGTAACTGCTTTTATA--TAAAAGTGAAAGATAACTC-AAAAATAATTCG  145
      ||||||||||||||||   ||||||||||||| |||| ||||||||||||
seq2  GGTAACTGCTTTTATAATAAAAAGTGAAAGAT-ACTCAAAAAATAATTCG  148

seq1  AACAAGTTAGTCTCAATAATCTTTAACT-CCATATTAGTTTTAC-AATTG  193
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  AACAAGTTAGTCTCAATAATCTTTAACTCCCATATTAGTTTTACAAATTG  198

seq1  GGTACCCACATACAAATAAAATAATTAGACTAAAAACAGGGAAGGATTTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCACATACAAATAAAATAATTAGACTAAAAACAGGGAAGGATTTG  248

seq1  AGTGGACATTTTTTTCTGTTACAGGTTTTCTTCCAGAAAATCAGGGAACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACATTTTTTTCTGTTACAGGTTTTCTTCCAGAAAATCAGGGAACA  298

seq1  GAGCCCTTTTCTTCCAGGAAGCAGTTCATTATGCTTCCATACTGTCTCAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTTTCTTCCAGGAAGCAGTTCATTATGCTTCCATACTGTCTCAC  348

seq1  AGTAGATTAATATTTAAAAGCTGAAAAAGACCAGTATCACAGTGTGACTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTAATATTTAAAAGCTGAAAAAGACCAGTATCACAGTGTGACTG  398

seq1  TGTCTTTTATACCTATTTTAACTGTTGTATCTCCCATAACAGGTAACAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTATACCTATTTTAACTGTTGTATCTCCCATAACAGGTAACAAA  448

seq1  CACCTCAATTAAATGTATAAAAACTGCAGGGTTGTGATATTAAAAGCAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAATTAAATGTATAAAAACTGCAGGGTTGTGATATTAAAAGCAGC  498

seq1  TGCATTATGGAAAAGAGGAAGTCATTGGAAAAACACATCAAAGTTGCATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGGAAAAGAGGAAGTCATTGGAAAAACACATCAAAGTTGCATA  548

seq1  TATACACAGAACACTGAATAGACCATATTCTTCCTTTGTTCTCTAGTTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGAACACTGAATAGACCATATTCTTCCTTTGTTCTCTAGTTGT  598

seq1  CAGCCCTCAGAGACTCCAATCACATTTTAAAGAAAATATATAAATGTCAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCAGAGACTCCAATCACATTTTAAAGAAAATATATAAATGTCAC  648

seq1  ATATACACATATATATTATTTATAATTATTCAATATTAACTGTTGTTGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACATATATATTATTTATAATTATTCAATATTAACTGTTGTTGGA  698

seq1  GAATACAAGTTCAAACTTCATTGGTACGCTTGTGCCTACTCTGGAATGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAGTTCAAACTTCATTGGTACGCTTGTGCCTACTCTGGAATGAC  748

seq1  TATGAAGAAAGACATCAGTTCACTTTGATGAGGCAAAATTCACAACATAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAAAGACATCAGTTCACTTTGATGAGGCAAAATTCACAACATAG  798

seq1  CAAAATTCACAAGCTTTCAAGAACATAAAGTGTGAGTTGATTTTGGACAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCACAAGCTTTCAAGAACATAAAGTGTGAGTTGATTTTGGACAC  848

seq1  ATCTATATAATTCTTCAAGTTTTAATGAACTTTACCATGTGACATCGTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATAATTCTTCAAGTTTTAATGAACTTTACCATGTGACATCGTAT  898

seq1  TTCCAGTTCTACGTGTATTTTTAATAAAAAATAAAAACATACAACGAAAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCTACGTGTATTTTTAATAAAAAATAAAAACATACAACGAAAC  948

seq1  AGAGAAAAGTATACACCAGTTCTAAAGAAATGATTCATCCATTAAGAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGTATACACCAGTTCTAAAGAAATGATTCATCCATTAAGAGCA  998

seq1  CTTGCAAGTCAAGTTCAAGTGGATCAAGAACCTCAACATAAAACCAGATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGTCAAGTTCAAGTGGATCAAGAACCTCAACATAAAACCAGATA  1048

seq1  CACTGAATATAATTGAAGAGAAACTGGTAAAAAGCCTTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATATAATTGAAGAGAAACTGGTAAAAAGCCTTGAATTC  1092