BAC Information

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BAC

Clone NameB6Ng01-318E02
Chromosome1 (Build37)
Map Location 170,374,677 - 170,465,490
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318E02.bB6Ng01-318E02.g
ACCGA108192GA108193
length1,1181,077
definitionB6Ng01-318E02.b B6Ng01-318E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,374,677 - 170,375,797)(170,464,413 - 170,465,490)
sequence
gaattgaacttaggacctttggaagagcagtcagtactcttaaccactga
gctatctcaccagctgcccctccccccacactcccttttaaaaagattta
tttattttatgtatctgagggctctatgtgcatgtatacctgcgtaccag
aagagggtatcagaccccatatggttgtaaactgtgaggttcctgggaat
tgaactcaggacctctggaagagcagccagtgctcttaactcatctctcc
agcccccaaggtgctatttttttttattcctttctgagtttcttagataa
aattattcttttggtctcgagtacacttcccattactctctgtttctggc
tgtgtatttacctcaggaagcaggtaccttgagtgtttgcctgatgggtg
atgggtgtttgtttgcctcgcatatggcaacatctcaatgtatcttagac
agagagacagaagagtgactttacattgtaggttttcttctggtgggagg
gagggaatgcttaaagagagtttctgtgtgtagctcaggctatcttagaa
cttactctgtagaccaggctggccttgaactcaaagatcttcctttctct
acctcccaagtactgagactaatggtgtgcgctgccacaattggctcaca
ctatagtttttaaagtatctttttttttttcttattacttctcattaaca
ttaagttgggtctatgttttcatatgcaaagtaaagtatttttatacaat
tttattttaagaaagaaattaatgtttcaagagaaagttaactaagattt
gttctagctttaaaatttaatgcctccctttttcaaaattgctgcctcaa
aatattttaagataaaaattagtagaattcaattacacaattagttggcc
tgtaaccttccccttacgttgaatttatacatagataaaaagtgaagaga
aatcaatgaactttgcatttctgaattggcactctgatttttaacaatct
cacagcagcataaacagttataggagtaggtatgatgacaaatgatggga
aaatttcatggctcttctcatgcggtcacatttcataaaggtccatatta
aatatataaggtatagca

gaattctatgcagtgcccttcccactcttctctgtcatctactgcagagt
gtaggtcctgaggttaaatgtagaggggatgcattggagagcacacagtc
tcgtaggatgcagtaaggttagtaaggagaaagaccttaaagatgatgat
tgggctctatggttgtataacaagctattccaaataagaaagcccaagcc
tcattttctgatatctagctgcttcgttggatcaagatttcaagttgagc
ttagatcaggttctggttcaggtcttactagagtgataactgaagctagc
tgatcaggcatctttgtctactcatgttgtataagaatcactccatgtgt
attcttagcctggatcactttgacttccaccatagcatggtgacctcaca
gaagttaaaatactcccctgaaagattatgacctttgctgaaaatacgag
ctaaaccttcagactctggtaacttccaccatattcttccagccatatga
aatcacagtcccttccagattccagaagaaggcatgtagacattacccaa
ccttcaaatgggaaaaaacccaaagtcatatcgcaagaagagcaagttgg
agccaacgtcagagagtacaatttgcttcatggcaactaacatgaaagca
atatttcaggaaaaacttagtgtgtaagaataaagagagaggacacagaa
aatagcttcagtagtcagcagtatttggtggtaaatgaaatctttaatga
ggctaggatcaatgcacttctttctcaagccatagagacagaaaaaaaaa
aatacctgctttgtgttagatgcatacagtcacccagacctgtgtaaaca
cacgcgttcaggcacaaacaaacatgcaagtgtacctctagaacacttgc
ataagttgcatttctgttgctgtgacaaaataccatgaccaaagcaattt
atggaaagaaaggttgtttgggcttacagtcccagagactgagcatggag
aaagggttttgacacagccagggtaaacacaatgacaagaacagaaagct
gactgctgtgatctcatacacacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170374677_170375797
seq2: B6Ng01-318E02.b_46_1163

seq1  GAATTGAACTTAGGACCTTTGGAAGAGCAGTCAGTACTCTTAACCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTTAGGACCTTTGGAAGAGCAGTCAGTACTCTTAACCACTGA  50

seq1  GCTATCTCACCAGCTGCCCCTCCCCCCACACTCCCTTTTAAAAAGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCACCAGCTGCCCCTCCCCCCACACTCCCTTTTAAAAAGATTTA  100

seq1  TTTATTTTATGTATCTGAGGGCTCTATGTGCATGTATACCTGCGTACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATGTATCTGAGGGCTCTATGTGCATGTATACCTGCGTACCAG  150

seq1  AAGAGGGTATCAGACCCCATATGGTTGTAAACTGTGAGGTTCCTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTATCAGACCCCATATGGTTGTAAACTGTGAGGTTCCTGGGAAT  200

seq1  TGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACTCATCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACTCATCTCTCC  250

seq1  AGCCCCCAAGGTGCTATTTTTTTTTATTCCTTTCTGAGTTTCTTAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAAGGTGCTATTTTTTTTTATTCCTTTCTGAGTTTCTTAGATAA  300

seq1  AATTATTCTTTTGGTCTCGAGTACACTTCCCATTACTCTCTGTTTCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTTTTGGTCTCGAGTACACTTCCCATTACTCTCTGTTTCTGGC  350

seq1  TGTGTATTTACCTCAGGAAGCAGGTACCTTGAGTGTTTGCCTGATGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTACCTCAGGAAGCAGGTACCTTGAGTGTTTGCCTGATGGGTG  400

seq1  ATGGGTGTTTGTTTGCCTCGCATATGGCAACATCTCAATGTATCTTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTTTGTTTGCCTCGCATATGGCAACATCTCAATGTATCTTAGAC  450

seq1  AGAGAGACAGAAGAGTGACTTTACATTGTAGGTTTTCTTCTGGTGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAAGAGTGACTTTACATTGTAGGTTTTCTTCTGGTGGGAGG  500

seq1  GAGGGAATGCTTAAAGAGAGTTTCTGTGTGTAGCTCAGGCTATCTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGCTTAAAGAGAGTTTCTGTGTGTAGCTCAGGCTATCTTAGAA  550

seq1  CTTACTCTGTAGACCAGGCTGGCCTTGAACTCAAAGATCTTCCTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGTAGACCAGGCTGGCCTTGAACTCAAAGATCTTCCTTTCTCT  600

seq1  ACCTCCCAAGTACTGAGACTAATGGTGTGCGCTGCCACAATTGGCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAAGTACTGAGACTAATGGTGTGCGCTGCCACAATTGGCTCACA  650

seq1  CTATAGTTTTTAAAGTATCTTTTTTTTTTTCTTATTACTTCTCATTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTTTTAAAGTATCTTTTTTTTTTTCTTATTACTTCTCATTAACA  700

seq1  TTAAGTTGGGTCTATGTTTTCATATGCAAAGTAAAGTATTTTTATACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGGGTCTATGTTTTCATATGCAAAGTAAAGTATTTTTATACAAT  750

seq1  TTTATTTTAAGAAAGAAATTAATGTTTCAAGAGAAAGTTAACTAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAGAAAGAAATTAATGTTTCAAGAGAAAGTTAACTAAGATTT  800

seq1  GTTCTAGCTTTAAAATTTAATGCCTCCCTTTTTCAAAATTGCTGCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCTTTAAAATTTAATGCCTCCCTTTTTCAAAATTGCTGCCTCAA  850

seq1  AATATTTTAAGATAAAAATTAGTAGAATTCAATTACACAATTAGTT-GCC  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATATTTTAAGATAAAAATTAGTAGAATTCAATTACACAATTAGTTGGCC  900

seq1  TGTAACCTTCCCCTTACGTTGAATTTATACATAGAT-AAAAGTGAAGAGA  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTAACCTTCCCCTTACGTTGAATTTATACATAGATAAAAAGTGAAGAGA  950

seq1  AATCAATGAACTTTGCATTTCTGAATTGGCACTCTGATTTTTAACAAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATCAATGAACTTTGCATTTCTGAATTGGCACTCTGATTTTTAAC-AATC  999

seq1  TCACAGCAGCATAAAACAGTTTAATA-GAGTAAGTAATGATGACAAAATG  1047
      |||||||||||| ||||||||  ||| ||||| || |||||||| |||||
seq2  TCACAGCAGCAT-AAACAGTT--ATAGGAGTAGGT-ATGATGAC-AAATG  1044

seq1  ATGGAAAATTTTTATGTTTCTCTTCATTGCGTCACATTTCATAAA-GTCA  1096
      |||| ||| ||| |||  |||  ||||   ||||||||||||||| ||| 
seq2  ATGGGAAAATTTCATGGCTCTTCTCATGCGGTCACATTTCATAAAGGTCC  1094

seq1  ATATTAAATATATAAGTTAATAGCA  1121
      |||||||||||||||| | ||||||
seq2  ATATTAAATATATAAGGT-ATAGCA  1118


seq1: chr1_170464413_170465490
seq2: B6Ng01-318E02.g_67_1143 (reverse)

seq1  CCCTGTGTGTATGAGAACACAAGCAGTCAGCTTTCTGTTCTTGTCATTGT  50
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CCCTGTGTGTATGAGATCAC-AGCAGTCAGCTTTCTGTTCTTGTCATTGT  49

seq1  GTTTCCCCTGGCTGTTGTC-AAACCCTTTCTCCATGCTCAGTCTCTGGGA  99
      |||| ||||||||| |||| ||||||||||||||||||||||||||||||
seq2  GTTTACCCTGGCTG-TGTCAAAACCCTTTCTCCATGCTCAGTCTCTGGGA  98

seq1  CTGTAAGCCCAAACAAACCTTTCTTTCCATAAATTGCTTTTGGTCATGGT  149
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CTGTAAGCCCAAAC-AACCTTTCTTTCCATAAATTGC-TTTGGTCATGGT  146

seq1  ATTTTGTCACAGCAACAGAAATGCAACTTATGCAAGTGTTCTAGAGGTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCACAGCAACAGAAATGCAACTTATGCAAGTGTTCTAGAGGTAC  196

seq1  ACTTGCATGTTTGTTTGTGCCTGAACGCGTGTGTTTACACAGGTCTGGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGTTTGTTTGTGCCTGAACGCGTGTGTTTACACAGGTCTGGGT  246

seq1  GACTGTATGCATCTAACAC-AAGCAGGTA-TTTTTTTTTTCTGTCTCTAT  297
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GACTGTATGCATCTAACACAAAGCAGGTATTTTTTTTTTTCTGTCTCTAT  296

seq1  GGCTTGAGAAAGAAGTGCATTGATCCTAGCCTCATTAAAGATTTCATTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGAAAGAAGTGCATTGATCCTAGCCTCATTAAAGATTTCATTTA  346

seq1  CCACCAAATACTGCTGACTACTGAAGCTATTTTCTGTGTCCTCTCTCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAATACTGCTGACTACTGAAGCTATTTTCTGTGTCCTCTCTCTTT  396

seq1  ATTCTTACACACTAAGTTTTTCCTGAAATATTGCTTTCATGTTAGTTGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACACACTAAGTTTTTCCTGAAATATTGCTTTCATGTTAGTTGCC  446

seq1  ATGAAGCAAATTGTACTCTCTGACGTTGGCTCCAACTTGCTCTTCTTGCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAATTGTACTCTCTGACGTTGGCTCCAACTTGCTCTTCTTGCG  496

seq1  ATATGACTTTGGGTTTTTTCCCATTTGAAGGTTGGGTAATGTCTACATGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTTTGGGTTTTTTCCCATTTGAAGGTTGGGTAATGTCTACATGC  546

seq1  CTTCTTCTGGAATCTGGAAGGGACTGTGATTTCATATGGCTGGAAGAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGGAATCTGGAAGGGACTGTGATTTCATATGGCTGGAAGAATA  596

seq1  TGGTGGAAGTTACCAGAGTCTGAAGGTTTAGCTCGTATTTTCAGCAAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGTTACCAGAGTCTGAAGGTTTAGCTCGTATTTTCAGCAAAGG  646

seq1  TCATAATCTTTCAGGGGAGTATTTTAACTTCTGTGAGGTCACCATGCTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCTTTCAGGGGAGTATTTTAACTTCTGTGAGGTCACCATGCTAT  696

seq1  GGTGGAAGTCAAAGTGATCCAGGCTAAGAATACACATGGAGTGATTCTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGTCAAAGTGATCCAGGCTAAGAATACACATGGAGTGATTCTTA  746

seq1  TACAACATGAGTAGACAAAGATGCCTGATCAGCTAGCTTCAGTTATCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGAGTAGACAAAGATGCCTGATCAGCTAGCTTCAGTTATCACT  796

seq1  CTAGTAAGACCTGAACCAGAACCTGATCTAAGCTCAACTTGAAATCTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGACCTGAACCAGAACCTGATCTAAGCTCAACTTGAAATCTTGA  846

seq1  TCCAACGAAGCAGCTAGATATCAGAAAATGAGGCTTGGGCTTTCTTATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGAAGCAGCTAGATATCAGAAAATGAGGCTTGGGCTTTCTTATTT  896

seq1  GGAATAGCTTGTTATACAACCATAGAGCCCAATCATCATCTTTAAGGTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCTTGTTATACAACCATAGAGCCCAATCATCATCTTTAAGGTCT  946

seq1  TTCTCCTTACTAACCTTACTGCATCCTACGAGACTGTGTGCTCTCCAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTACTAACCTTACTGCATCCTACGAGACTGTGTGCTCTCCAATG  996

seq1  CATCCCCTCTACATTTAACCTCAGGACCTACACTCTGCAGTAGATGACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTCTACATTTAACCTCAGGACCTACACTCTGCAGTAGATGACAG  1046

seq1  AGAAGAGTGGGAAGGGCACTGCATAGAATTC  1078
      |||||||||||||||||||||||||||||||
seq2  AGAAGAGTGGGAAGGGCACTGCATAGAATTC  1077


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