BAC Information

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BAC

Clone NameB6Ng01-318M01
Chromosome1 (Build37)6 (Build37)
Map Location 173,384,824 - 173,385,75084,929,839 - 84,930,213
singlet/doubletsingletsinglet
Overlap geneF11r
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654
Downstream geneRefbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M01.bB6Ng01-318M01.g
ACCGA108560GA108561
length927412
definitionB6Ng01-318M01.b B6Ng01-318M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(173,384,824 - 173,385,750)(84,929,839 - 84,930,213)
sequence
gaattcaattcccagcaaccacatagtggcttttacagctatttgtaatg
ggatccggtacactcttctagtgtatgtctgaagacagctgcagtatact
catataactaaaaaataaataaaatcttaaagaaaaagtaagagtatgtt
ggtgtcagaggttaaattagaggcgggttgcggggtacgtcagtgatgag
gccaagggaataatagagggcaggaaagtgatacatcctgttgtaggcgg
gtgtccatgagggagagcccctaatttggtgggctggggtttaaagctcc
cttgtatagtgctcactgcttatttaaatgtgtcgttgaagcaaatgttg
atgtcagaaggcgaggtgtgaacagatggacttagtgatggtgatggtga
ggcacagtgcttatttggtgcctcctgttggtcagatgctgttctaagca
ctttggagtttgttttgagaccgtctcactgtctcatctcttactggcct
ggaactcagtaagatccacctgcctctgcctcccgagggctgggatcacg
gtgtgtgcaccattccaggctaagccctttatttgtattgccttgttgga
cctgcactttgatgtagaaatggttgtcatctccagtttacagactgcca
gagtgctcacaatggctgaagtggcctgccccagtcacgcagtccagtag
gagacgcagctggggtttgcacgtgggtagcctggttccaaaggcatgta
agggacgtgggccagattgcttgaggagtctttgtatgaatagaaacagc
acggtgttgaggctggatttgaatcatgggaggcgtagcaggcatggtag
acattaattaattaattttattatttatataattatttatttaaatttag
tttttgtttgttggttgggttgggttt
cagggccaaaaagggggagtgggtgggtaggggagtgtttgattttctgg
agtccacctccttgagttctttatatatattggatattagtaccctatct
gatttagggtaggtaaagattctttcccaatctggtggtggcctttttgt
cttattaacggtgtcttttgccttacaatttacagctttgcaattttatg
aggtcccatttgttgattctcgattttacagcacaagccattgctgtttt
attcagaaatttgtcccctgtgcccatatctttgaggcttttcctcactt
tctcctctataagtttcactgtctctggttcaggatgagaattttatctg
gtgtggcataatctgagaatgaagggtctctctctctctctctctctctc
tctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173384824_173385750
seq2: B6Ng01-318M01.b_48_974

seq1  GAATTCAATTCCCAGCAACCACATAGTGGCTTTTACAGCTATTTGTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATAGTGGCTTTTACAGCTATTTGTAATG  50

seq1  GGATCCGGTACACTCTTCTAGTGTATGTCTGAAGACAGCTGCAGTATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCGGTACACTCTTCTAGTGTATGTCTGAAGACAGCTGCAGTATACT  100

seq1  CATATAACTAAAAAATAAATAAAATCTTAAAGAAAAAGTAAGAGTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACTAAAAAATAAATAAAATCTTAAAGAAAAAGTAAGAGTATGTT  150

seq1  GGTGTCAGAGGTTAAATTAGAGGCGGGTTGCGGGGTACGTCAGTGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGAGGTTAAATTAGAGGCGGGTTGCGGGGTACGTCAGTGATGAG  200

seq1  GCCAAGGGAATAATAGAGGGCAGGAAAGTGATACATCCTGTTGTAGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGAATAATAGAGGGCAGGAAAGTGATACATCCTGTTGTAGGCGG  250

seq1  GTGTCCATGAGGGAGAGCCCCTAATTTGGTGGGCTGGGGTTTAAAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGAGGGAGAGCCCCTAATTTGGTGGGCTGGGGTTTAAAGCTCC  300

seq1  CTTGTATAGTGCTCACTGCTTATTTAAATGTGTCGTTGAAGCAAATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATAGTGCTCACTGCTTATTTAAATGTGTCGTTGAAGCAAATGTTG  350

seq1  ATGTCAGAAGGCGAGGTGTGAACAGATGGACTTAGTGATGGTGATGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAAGGCGAGGTGTGAACAGATGGACTTAGTGATGGTGATGGTGA  400

seq1  GGCACAGTGCTTATTTGGTGCCTCCTGTTGGTCAGATGCTGTTCTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTGCTTATTTGGTGCCTCCTGTTGGTCAGATGCTGTTCTAAGCA  450

seq1  CTTTGGAGTTTGTTTTGAGACCGTCTCACTGTCTCATCTCTTACTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGTTTGTTTTGAGACCGTCTCACTGTCTCATCTCTTACTGGCCT  500

seq1  GGAACTCAGTAAGATCCACCTGCCTCTGCCTCCCGAGGGCTGGGATCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGTAAGATCCACCTGCCTCTGCCTCCCGAGGGCTGGGATCACG  550

seq1  GTGTGTGCACCATTCCAGGCTAAGCCCTTTATTTGTATTGCCTTGTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCACCATTCCAGGCTAAGCCCTTTATTTGTATTGCCTTGTTGGA  600

seq1  CCTGCACTTTGATGTAGAAATGGTTGTCATCTCCAGTTTACAGACTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTTTGATGTAGAAATGGTTGTCATCTCCAGTTTACAGACTGCCA  650

seq1  GAGTGCTCACAATGGCTGAAGTGGCCTGCCCCAGTCACGCAGTCCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCACAATGGCTGAAGTGGCCTGCCCCAGTCACGCAGTCCAGTAG  700

seq1  GAGACGCAGCTGGGGTTTGCACGTGGGTAGCCTGGTTCCAAAGGCATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCAGCTGGGGTTTGCACGTGGGTAGCCTGGTTCCAAAGGCATGTA  750

seq1  AGGGACGTGGGCCAGATTGCTTGAGGAGTCTTTGTATGAATAGAAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGTGGGCCAGATTGCTTGAGGAGTCTTTGTATGAATAGAAACAGC  800

seq1  ACGGTGTTGAGGCTGGATTTGAATCATGGGAGGCGTAGGCAGGCATGGTA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACGGTGTTGAGGCTGGATTTGAATCATGGGAGGCGTA-GCAGGCATGGTA  849

seq1  GACATTAATTAATTAATTTTATTATTTATATAATTATTTATTTAAATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAATTAATTAATTTTATTATTTATATAATTATTTATTTAAATTTA  899

seq1  GTTTTTGTTTGTTGGTT-GGTTGGTTTT  927
      ||||||||||||||||| |||||| |||
seq2  GTTTTTGTTTGTTGGTTGGGTTGGGTTT  927

seq1: chr6_84929839_84930213
seq2: B6Ng01-318M01.g_111_485 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCTTCATTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCTTCATTCTCAG  50

seq1  ATTATGCCACACCAGATAAAATTCTCATCCTGAACCAGAGACAGTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCACACCAGATAAAATTCTCATCCTGAACCAGAGACAGTGAAAC  100

seq1  TTATAGAGGAGAAAGTGAGGAAAAGCCTCAAAGATATGGGCACAGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGAGAAAGTGAGGAAAAGCCTCAAAGATATGGGCACAGGGGAC  150

seq1  AAATTTCTGAATAAAACAGCAATGGCTTGTGCTGTAAAATCGAGAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGAATAAAACAGCAATGGCTTGTGCTGTAAAATCGAGAATCAA  200

seq1  CAAATGGGACCTCATAAAATTGCAAAGCTGTAAATTGTAAGGCAAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGACCTCATAAAATTGCAAAGCTGTAAATTGTAAGGCAAAAGAC  250

seq1  ACCGTTAATAAGACAAAAAGGCCACCACCAGATTGGGAAAGAATCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTAATAAGACAAAAAGGCCACCACCAGATTGGGAAAGAATCTTTAC  300

seq1  CTACCCTAAATCAGATAGGGTACTAATATCCAATATATATAAAGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTAAATCAGATAGGGTACTAATATCCAATATATATAAAGAACTCA  350

seq1  AGGAGGTGGACTCCAGAAAATCAAA  375
      |||||||||||||||||||||||||
seq2  AGGAGGTGGACTCCAGAAAATCAAA  375