BAC Information

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BAC

Clone NameB6Ng01-319A09
Chromosome1 (Build37)
Map Location 112,343,333 - 112,344,377
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319A09.bB6Ng01-319A09.g
ACCGA108761GA108762
length1,2201,029
definitionB6Ng01-319A09.b B6Ng01-319A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagattagacaaaccactaatttaaatcaagcaacaataaata
gcctaaacagactcctaacaaatgagattaaaatagcaatacaaaagtct
tttaactaaaaagtctagactcacatgaatatatacaataatattaccag
gctttccacagaagatattcagccaataccttaaattttaaaaacatata
aaaatttgagacctaatccatgagggcctacccttgatattattaatgct
attttctgacactttcagatagggacatagcatacatgtcttctgagagg
cttcacccaccagcttatagaaacagatgtagagattcacactagttgga
gcacaggatatcttttggaagagagggaggaatgaatgaaagactcaaaa
actcaggagacagcatatgctgatgagaatgtggggaaacaggaacactc
ctccattgcttctgggattgcaagctggtacaaccactttggaatcagca
tagtggctgttcataaaactggacatagtactacctgaaaaaccagatgt
accactcctggtcatataccctaaagttgttccaacatataaaaaagaca
tatgctccactatattcatagcagccatatttatagtagcaagaagctac
ccggatctacctcaacaaaggaataaatctgagccttatttttaatgatg
gttcttaaatgctttaacctctattgtaggtagcccaacacccaccagaa
gtagtggaaaagaaaggataaggggaaatgtgcctgtctagaaaggtacc
ttggagcaatggtaatctgtcttttctggaaattagcagttcaatttaca
ggttagcaatggcagcatgatccattgacaaacacctcacagatacaata
acagttaggtagagtgaggatagcaaacacgaatcaacagtgatagcact
acctagcagagacagccagggcctcagcctaggctgaaagtcagcagaaa
gaccaggaggaatgccagtagagttcttcttgctgtgcctcctcctcagg
gaagcaaagatagccaaggctggagaaccaaatcaattgcacagctagct
ccttttcagcaagctaagctcagcctcccatccactgtccacatcaaggt
tctatttataattccacaaacatcatggttttctctccattggtctgttc
cacacgcgcgtgagaaaatc

gaattcctcctgtgcattatcttgtttatactggaattttcaaattatat
tctaaataataattagggattggataattaaattttactggaatgcagct
agcatgtgaaatgcaataccattgtcacaaagtcattgttgtatcaataa
aattttatttataaacatttctatcaacttaagttggcacacggtttcag
ctgcaccagtatattccatttcccctcttctagttcttctctttcgattc
cttctctgcctccattttcttcctttatcctagcttctgtcaccttcgtt
taaattcctttggttcctttctatattaaccaccacattcttcttgtttt
aagttcctaatattttaattatggtgagaatatttatagcatctttgcag
tttcctagaagggttttaattatctgaactattcatataagtttagcatg
gatagcctagaaatgaatgtaagaaaatgtatcattttactgttaagtta
tattttagtttcttttgatttcctgggttttgaaatattgacatatgaat
ttgacctagagttatgagaagacgggtgagcaagagtcgtggcaaagggc
tttgatctctagcctacaaacagtcctggaaaccacttattttattttac
tgtttgtttgtgtgattgattgattgattgattttttttcttacaaaacc
tctataatcaaactgagcctttaaacaaagcatataatttcactttgcat
agaataagttacttcaggaactcctggtataaatctgtaaaatcattaac
tctaaaaccacatttctcagtaagaagtatttcagcaagttttaaacatg
catggtaaatgtcctacagtgttttattcctaattttattattatttgtg
gtaaattctgtttccttggatatattgctgagttgtcaatctttaaatct
tttcttatgagaaatgtatctctttgtgtagtgcacaaaagattcaagca
atgtttattcatttcaagtcagagttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112343333_112344377
seq2: B6Ng01-319A09.g_68_1096

seq1  GAATTCCTCCTGTGCATTATCTTGTTTATACTGGAATTTTCAAATTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGTGCATTATCTTGTTTATACTGGAATTTTCAAATTATAT  50

seq1  TCTAAATAATAATTAGGGATTGGATAATTAAATTTTACTGGAATGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAATAATTAGGGATTGGATAATTAAATTTTACTGGAATGCAGCT  100

seq1  AGCATGTGAAATGCAATACCATTGTCACAAAGTCATTGTTGTATCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGAAATGCAATACCATTGTCACAAAGTCATTGTTGTATCAATAA  150

seq1  AATTTTATTTATAAACATTTCTATCAACTTAAGTTGGCACACGGTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTATAAACATTTCTATCAACTTAAGTTGGCACACGGTTTCAG  200

seq1  CTGCACCAGTATATTCCATTTCCCCTCTTCTAGTTCTTCTCTTTCGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGTATATTCCATTTCCCCTCTTCTAGTTCTTCTCTTTCGATTC  250

seq1  CTTCTCTGCCTCCATTTTCTTCCTTTATCCTAGCTTCTGTCACCTTCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCCTCCATTTTCTTCCTTTATCCTAGCTTCTGTCACCTTCGTT  300

seq1  TAAATTCCTTTGGTTCCTTTCTATATTAACCACCACATTCTTCTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTTTGGTTCCTTTCTATATTAACCACCACATTCTTCTTGTTTT  350

seq1  AAGTTCCTAATATTTTAATTATGGTGAGAATATTTATAGCATCTTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTAATATTTTAATTATGGTGAGAATATTTATAGCATCTTTGCAG  400

seq1  TTTCCTAGAAGGGTTTTAATTATCTGAACTATTCATATAAGTTTAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGAAGGGTTTTAATTATCTGAACTATTCATATAAGTTTAGCATG  450

seq1  GATAGCCTAGAAATGAATGTAAGAAAATGTATCATTTTACTGTTAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTAGAAATGAATGTAAGAAAATGTATCATTTTACTGTTAAGTTA  500

seq1  TATTTTAGTTTCTTTTGATTTCCTGGGTTTTGAAATATTGACATATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTTTCTTTTGATTTCCTGGGTTTTGAAATATTGACATATGAAT  550

seq1  TTGACCTAGAGTTATGAGAAGACGGGTGAGCAAGAGTCGTGGCAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAGAGTTATGAGAAGACGGGTGAGCAAGAGTCGTGGCAAAGGGC  600

seq1  TTTGATCTCTAGCCTACAAACAGTCCTGGAAACCACTTATTTTATTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCTAGCCTACAAACAGTCCTGGAAACCACTTATTTTATTTTAC  650

seq1  TGTTTGTTTGTGTGATTGATTGATTGATTGATTTTTTTTCTTACAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTGTGATTGATTGATTGATTGATTTTTTTTCTTACAAAACC  700

seq1  TCTATAATCAAACTGAGCCTTTAAACAAAGCATATAATTTCACTTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATCAAACTGAGCCTTTAAACAAAGCATATAATTTCACTTTGCAT  750

seq1  AGAATAAGTTACTTCAGGAACTCCTGGTATAAATCTGTAAAATCATTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGTTACTTCAGGAACTCCTGGTATAAATCTGTAAAATCATTAAC  800

seq1  TCTAAAACCACATTTCTCAGTAAGAAGTATTTCAGCAAGTTTTAAACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACCACATTTCTCAGTAAGAAGTATTTCAGCAAGTTTTAAACATG  850

seq1  CATGGTAAATGTCCTACAGTGTTTTATTCCTAATTTTATTTATTATTTGT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGGTAAATGTCCTACAGTGTTTTATTCCTAATTTTA-TTATTATTTGT  899

seq1  GGTAAATTCTGTTTCCTTGGATATATTTGCTGAAGTTGTCAAATCTTTAA  950
      ||||||||||||||||||||||||| |||||| ||||||| |||||||||
seq2  GGTAAATTCTGTTTCCTTGGATATA-TTGCTG-AGTTGTC-AATCTTTAA  946

seq1  ATCTTTTCTTTATGAGGAAATGTTATCTCTTTGTTGTAGTGCACAAAAGG  1000
      |||||||| |||||| |||||| |||||||||| ||||||||||||||| 
seq2  ATCTTTTC-TTATGA-GAAATG-TATCTCTTTG-TGTAGTGCACAAAAG-  991

seq1  AATTCAAAGGCAATGTTTTATTCATTTTTCAAAGTCAGAGTTCTT  1045
       ||||||  |||||| |||||||||||    ||||||||||||||
seq2  -ATTCAA--GCAATG-TTTATTCATTT---CAAGTCAGAGTTCTT  1029


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