BAC Information

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BAC

Clone NameB6Ng01-319G23
Chromosome1 (Build37)
Map Location 165,252,668 - 165,253,825
singlet/doubletsinglet
Overlap genenone
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597
Downstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319G23.bB6Ng01-319G23.g
ACCGA109067GA109068
length1,1561,162
definitionB6Ng01-319G23.b B6Ng01-319G23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagaaattaagctattcatttccacaaactgatcatcaaggaa
gaaattaaaatgcaaattaaaagtaatttgggccatatatcatatcctat
atattcaactcatatttttaaaatatgattaatggggatttttatactct
taagacttttttaaaagaagaactaaaacctatttgtttagttcacataa
aggtaaaagttgatatttcagcaaagttaaggctgaaagtgaaagcacat
gcctttaaccccagcacttagaggacgaggtaggtggagttctatgagtg
tgaaagtctccccaccaagagatcttcagactcaactggaatgaaattga
atttttccaaatattaaaaaaaacaacagtaacatcataaaacttagtga
agaacaaagaggaaatgcttctcaactttatatgagaacactgtgatcct
aacaacactaccaaaactggagaagaaaaataatcacaaagaagaaaaat
tgcatgctaatctttgtaagtggacaaaacttctacacaaaaattttgga
aaaatcaagcaagtgagatacaaggaaccaaacacttcacaaccaagctg
actttcttgtgggaatgcaaggtaggtcttatattataaaataaactaat
gggaatttaagcataaggacttgctggtaaaatgtcaaagtatttctctt
aaagttttggatgaggaacctacaactaatacttctatataatctgcctg
aaggcagagggtgtgcaacaaagatagagactatgttggacaggaaaatg
gctttctttgtgtgaaaaaagagcagagtaatgcatctattctgaagaaa
catccatataccataattcagtctccagaatggttagctaaactgttaca
tttagggattcagaacaataataattccattctaatgccctgagaacact
catgccctgccagtaaataagtccacctaactttaaatctcataatatgt
gtgggacatatgcaacagctacactttgaaaaagtgataacatctacaag
tatccaataacataactatgaccttaaatattcagttctagttaatatac
aactacggccatgtgcctacaaaacctagtatatggctaacttagccttg
gtatga
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaactttctctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggagaaggaaaaagaaaagaaaaaagatcaatta
gcggaggtctctaggagaaggagcctatactcatcactaggtgagctcaa
ggagccagttcttaatagttctgaatcagatgaaaaggctattagggcct
ggaaggcgctctcccgagcaggtgaagccactggacaataatgacagagg
caggctcttgcagcctacaaggtcttattgtccaccctggagttgtagat
caggattgtaaaggggaacttcaggttctctgttcttgtcctcaagttgt
cttttctatatcacaaagagacagaatagctcaactaataattttgccaa
gcctacatggctgttttttcttcctctgatattcctagagctgccagagg
gattggttctactagaaatgattctgattacttaataatgcctttagatt
gttgtcaaattttatctactcacgtaggggtaaaccctcgtggcgtcagg
ccattacaggtctgacaaatggatgtcacgcatatttcctcctttgagag
aaatcaatatttacatgtttagaagaacccactttaaaatgggattgtgg
tatatactgatggatcaaaactggcataggtgcctatgtggctatggtaa
aggtggtatcaaacaatatattgaaaatcactcaggtggtagaatggttt
aggtgattaggagttcaaacccttttcagaacctttaaattattggtgtc
agattccgtgagtgtatgcagtatctttgagacgtggcctaggagaggtg
attatacgagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165252668_165253825
seq2: B6Ng01-319G23.b_48_1203

seq1  GAATTCTTAGAAATTAAGCTATTCATTTCCACAAACTGATCATCAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAATTAAGCTATTCATTTCCACAAACTGATCATCAAGGAA  50

seq1  GAAATTAAAATGCAAATTAAAAGTAATTTGGGCCATATATCATATCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAATGCAAATTAAAAGTAATTTGGGCCATATATCATATCCTAT  100

seq1  ATATTCAACTCATATTTTTAAAATATGATTAATGGGGATTTTTATACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAACTCATATTTTTAAAATATGATTAATGGGGATTTTTATACTCT  150

seq1  TAAGACTTTTTTAAAAGAAGAACTAAAACCTATTTGTTTAGTTCACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTTTTAAAAGAAGAACTAAAACCTATTTGTTTAGTTCACATAA  200

seq1  AGGTAAAAGTTGATATTTCAGCAAAGTTAAGGCTGAAAGTGAAAGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAGTTGATATTTCAGCAAAGTTAAGGCTGAAAGTGAAAGCACAT  250

seq1  GCCTTTAACCCCAGCACTTAGAGGACGAGGTAGGTGGAGTTCTATGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAACCCCAGCACTTAGAGGACGAGGTAGGTGGAGTTCTATGAGTG  300

seq1  TGAAAGTCTCCCCACCAAGAGATCTTCAGACTCAACTGGAATGAAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCTCCCCACCAAGAGATCTTCAGACTCAACTGGAATGAAATTGA  350

seq1  ATTTTTCCAAATATTAAAAAAAACAACAGTAACATCATAAAACTTAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCAAATATTAAAAAAAACAACAGTAACATCATAAAACTTAGTGA  400

seq1  AGAACAAAGAGGAAATGCTTCTCAACTTTATATGAGAACACTGTGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGAGGAAATGCTTCTCAACTTTATATGAGAACACTGTGATCCT  450

seq1  AACAACACTACCAAAACTGGAGAAGAAAAATAATCACAAAGAAGAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTACCAAAACTGGAGAAGAAAAATAATCACAAAGAAGAAAAAT  500

seq1  TGCATGCTAATCTTTGTAAGTGGACAAAACTTCTACACAAAAATTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTAATCTTTGTAAGTGGACAAAACTTCTACACAAAAATTTTGGA  550

seq1  AAAATCAAGCAAGTGAGATACAAGGAACCAAACACTTCACAACCAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGCAAGTGAGATACAAGGAACCAAACACTTCACAACCAAGCTG  600

seq1  ACTTTCTTGTGGGAATGCAAGGTAGGTCTTATATTATAAAATAAACTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGTGGGAATGCAAGGTAGGTCTTATATTATAAAATAAACTAAT  650

seq1  GGGAATTTAAGCATAAGGACTTGCTGGTAAAATGTCAAAGTATTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTAAGCATAAGGACTTGCTGGTAAAATGTCAAAGTATTTCTCTT  700

seq1  AAAGTTTTGGATGAGGAACCTACAACTAATACTTCTATATAATCTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGGATGAGGAACCTACAACTAATACTTCTATATAATCTGCCTG  750

seq1  AAGGCAGAGGGTGTGCAACAAAGATAGAGACTATGTTGGACAGGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGGTGTGCAACAAAGATAGAGACTATGTTGGACAGGAAAATG  800

seq1  GCTTTCTTTGTGTGAAAAAAGAGCAGAGTAATGCATCTATTCTGAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTGTGTGAAAAAAGAGCAGAGTAATGCATCTATTCTGAAGAAA  850

seq1  CATCCATATACCATAATTCAGTCTCCAGAATGGTTAGCTAAACTGTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATATACCATAATTCAGTCTCCAGAATGGTTAGCTAAACTGTTACA  900

seq1  TTTAGGGATTCAGAACAATAATAATTCCATTCTAATGCCCTGAGAACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGATTCAGAACAATAATAATTCCATTCTAATGCCCTGAGAACACT  950

seq1  CATGCCCTGCCAGTAAATAAGTCCACCTAACTTTAAATCTCATATATTGT  1000
      |||||||||||||||||||||||||||||||||||||||||||| ||   
seq2  CATGCCCTGCCAGTAAATAAGTCCACCTAACTTTAAATCTCATA-ATATG  999

seq1  TGTGGGACATATGC-ACAGCTACAACTTTGAAAAAGTGATAACATCTACA  1049
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TGTGGGACATATGCAACAGCTAC-ACTTTGAAAAAGTGATAACATCTACA  1048

seq1  AGTATCAAAT-ACAT-ACTATGACCCT-AATATTCAATTTCTAAGTTAAT  1096
      |||||| ||| |||| ||||||||| | ||||||| | |||| |||||||
seq2  AGTATCCAATAACATAACTATGACCTTAAATATTC-AGTTCT-AGTTAAT  1096

seq1  ATACAACTAAGGGCATGTGCTTACAACA-CTAGTATATGCCTATAATCTA  1145
      ||||||||| || ||||||| ||||| | |||||||||| ||   | || 
seq2  ATACAACTACGGCCATGTGCCTACAAAACCTAGTATATGGCT---AACTT  1143

seq1  AGCCTTGGGATGA  1158
      |||||||| ||||
seq2  AGCCTTGGTATGA  1156